Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00028

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
30,035	-				-0.7
30,119	-				-0.4
30,143	-				-0.4
30,222	-				+1.0
30,231	+				-0.4
30,237	+				+1.2
30,237	+				+0.9
30,245	-				+1.6
30,260	-		MIT1002_00027	0.12	-0.3
30,342	-		MIT1002_00027	0.24	+0.9
30,381	+		MIT1002_00027	0.30	-0.5
30,441	-		MIT1002_00027	0.38	-3.7
30,486	-		MIT1002_00027	0.45	-2.3
30,495	-		MIT1002_00027	0.46	-0.6
30,507	+		MIT1002_00027	0.48	-1.0
30,515	+		MIT1002_00027	0.49	-1.3
30,523	-		MIT1002_00027	0.50	-2.6
30,552	-		MIT1002_00027	0.55	-1.1
30,573	-		MIT1002_00027	0.58	-0.7
30,588	+		MIT1002_00027	0.60	-0.4
30,596	-		MIT1002_00027	0.61	-0.1
30,608	-		MIT1002_00027	0.63	+4.1
30,695	-		MIT1002_00027	0.76	+0.4
30,779	+		MIT1002_00027	0.88	+1.2
30,782	+		MIT1002_00027	0.88	-0.2
30,808	-				-1.0
30,828	+				+0.4
30,828	+				+0.5
30,835	-				+0.6
30,836	-				-0.2
30,836	-				+1.1
30,836	-				-2.0
30,836	-				+1.3
30,853	-				-1.1
30,884	+				+3.4
30,884	+				-0.4
30,916	-				-3.2
30,918	+				-0.8
30,925	-				-2.3
30,936	+				-1.0
30,945	-				-0.2
30,961	+				+1.6
30,961	+				+0.4
31,017	+				+0.7
31,025	-				-1.7
31,025	-				+0.3
31,025	-				-0.1
31,025	-				+0.3
31,036	+		MIT1002_00028	0.12	-0.0
31,036	+		MIT1002_00028	0.12	-0.9
31,064	-		MIT1002_00028	0.18	-0.7
31,124	+		MIT1002_00028	0.32	+0.2
31,124	+		MIT1002_00028	0.32	+0.4
31,124	+		MIT1002_00028	0.32	-0.5
31,132	-		MIT1002_00028	0.34	-0.7
31,132	-		MIT1002_00028	0.34	-0.1
31,132	-		MIT1002_00028	0.34	+0.9
31,132	-		MIT1002_00028	0.34	-3.2
31,132	-		MIT1002_00028	0.34	-1.3
31,132	-		MIT1002_00028	0.34	-0.1
31,132	-		MIT1002_00028	0.34	-1.5
31,132	-		MIT1002_00028	0.34	+1.6
31,194	+		MIT1002_00028	0.48	-1.2
31,254	-		MIT1002_00028	0.62	-3.0
31,263	+		MIT1002_00028	0.64	-1.8
31,263	+		MIT1002_00028	0.64	-2.7
31,263	+		MIT1002_00028	0.64	+0.0
31,263	+		MIT1002_00028	0.64	-3.2
31,275	+		MIT1002_00028	0.67	-0.9
31,336	+		MIT1002_00028	0.81	+0.1
31,345	+		MIT1002_00028	0.83	+0.6
32,340	+		MIT1002_00030	0.16	+1.0
32,403	+		MIT1002_00030	0.28	-1.0