Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS44405

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS44400 and QEN71_RS44405 are separated by 300 nucleotidesQEN71_RS44405 and QEN71_RS44410 are separated by 106 nucleotidesQEN71_RS44410 and QEN71_RS44415 are separated by 192 nucleotides QEN71_RS44400: QEN71_RS44400 - IS110 family transposase, at 353,778 to 354,908 _RS44400 QEN71_RS44405: QEN71_RS44405 - IS5 family transposase, at 355,209 to 356,015 _RS44405 QEN71_RS44410: QEN71_RS44410 - group II intron maturase-specific domain-containing protein, at 356,122 to 356,490 _RS44410 QEN71_RS44415: QEN71_RS44415 - transposase, at 356,683 to 357,028 _RS44415 Position (kb) 355 356 357Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 354.223 kb on + strand, within QEN71_RS44400at 354.306 kb on + strand, within QEN71_RS44400at 354.306 kb on + strand, within QEN71_RS44400at 354.306 kb on + strand, within QEN71_RS44400at 354.307 kb on - strand, within QEN71_RS44400at 354.307 kb on - strand, within QEN71_RS44400at 354.307 kb on - strand, within QEN71_RS44400at 354.308 kb on + strand, within QEN71_RS44400at 354.308 kb on + strand, within QEN71_RS44400at 354.308 kb on + strand, within QEN71_RS44400at 354.308 kb on + strand, within QEN71_RS44400at 354.308 kb on + strand, within QEN71_RS44400at 354.309 kb on - strand, within QEN71_RS44400at 354.309 kb on - strand, within QEN71_RS44400at 354.309 kb on - strand, within QEN71_RS44400at 354.433 kb on - strand, within QEN71_RS44400at 354.433 kb on - strand, within QEN71_RS44400at 354.627 kb on + strand, within QEN71_RS44400at 354.628 kb on - strand, within QEN71_RS44400at 354.628 kb on - strand, within QEN71_RS44400at 354.628 kb on - strand, within QEN71_RS44400at 354.646 kb on + strand, within QEN71_RS44400at 354.922 kb on + strandat 354.941 kb on + strandat 355.039 kb on + strandat 355.039 kb on + strandat 355.073 kb on - strandat 355.124 kb on + strandat 355.124 kb on + strandat 355.194 kb on + strandat 355.194 kb on + strandat 355.194 kb on + strandat 355.194 kb on + strandat 355.194 kb on + strandat 355.194 kb on + strandat 355.194 kb on + strandat 355.195 kb on - strandat 355.195 kb on - strandat 356.013 kb on + strandat 356.014 kb on - strandat 356.024 kb on - strandat 356.059 kb on + strandat 356.059 kb on + strandat 356.085 kb on + strandat 356.155 kb on + strandat 356.157 kb on + strandat 356.235 kb on - strand, within QEN71_RS44410at 356.246 kb on + strand, within QEN71_RS44410at 356.247 kb on - strand, within QEN71_RS44410at 356.284 kb on + strand, within QEN71_RS44410at 356.284 kb on + strand, within QEN71_RS44410at 356.284 kb on + strand, within QEN71_RS44410at 356.284 kb on + strand, within QEN71_RS44410at 356.284 kb on + strand, within QEN71_RS44410at 356.406 kb on + strand, within QEN71_RS44410at 356.407 kb on - strand, within QEN71_RS44410at 356.420 kb on - strand, within QEN71_RS44410at 356.491 kb on + strandat 356.491 kb on + strandat 356.491 kb on + strandat 356.491 kb on + strandat 356.491 kb on + strandat 356.492 kb on - strandat 356.492 kb on - strandat 356.501 kb on - strandat 356.531 kb on + strandat 356.531 kb on + strandat 356.531 kb on + strandat 356.532 kb on - strandat 356.532 kb on - strandat 356.668 kb on - strandat 356.803 kb on + strand, within QEN71_RS44415at 356.803 kb on + strand, within QEN71_RS44415at 356.803 kb on + strand, within QEN71_RS44415at 356.803 kb on + strand, within QEN71_RS44415at 356.803 kb on + strand, within QEN71_RS44415at 356.803 kb on + strand, within QEN71_RS44415at 356.804 kb on - strand, within QEN71_RS44415at 356.804 kb on - strand, within QEN71_RS44415at 356.804 kb on - strand, within QEN71_RS44415at 356.804 kb on - strand, within QEN71_RS44415at 356.958 kb on + strand, within QEN71_RS44415at 356.958 kb on + strand, within QEN71_RS44415at 356.958 kb on + strand, within QEN71_RS44415at 356.958 kb on + strand, within QEN71_RS44415at 356.958 kb on + strand, within QEN71_RS44415at 356.959 kb on - strand, within QEN71_RS44415at 356.959 kb on - strand, within QEN71_RS44415at 356.959 kb on - strand, within QEN71_RS44415at 356.974 kb on + strand, within QEN71_RS44415at 356.994 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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354,223 + QEN71_RS44400 0.39 +1.3
354,306 + QEN71_RS44400 0.47 +0.9
354,306 + QEN71_RS44400 0.47 +0.3
354,306 + QEN71_RS44400 0.47 +0.3
354,307 - QEN71_RS44400 0.47 +0.0
354,307 - QEN71_RS44400 0.47 -1.0
354,307 - QEN71_RS44400 0.47 -1.8
354,308 + QEN71_RS44400 0.47 +1.6
354,308 + QEN71_RS44400 0.47 +0.3
354,308 + QEN71_RS44400 0.47 +2.3
354,308 + QEN71_RS44400 0.47 +0.9
354,308 + QEN71_RS44400 0.47 +0.3
354,309 - QEN71_RS44400 0.47 +0.7
354,309 - QEN71_RS44400 0.47 -0.5
354,309 - QEN71_RS44400 0.47 +0.6
354,433 - QEN71_RS44400 0.58 +0.5
354,433 - QEN71_RS44400 0.58 +1.1
354,627 + QEN71_RS44400 0.75 -0.4
354,628 - QEN71_RS44400 0.75 -0.4
354,628 - QEN71_RS44400 0.75 +0.3
354,628 - QEN71_RS44400 0.75 -0.7
354,646 + QEN71_RS44400 0.77 -0.7
354,922 + +0.2
354,941 + +1.3
355,039 + +0.6
355,039 + -0.1
355,073 - -0.8
355,124 + +0.4
355,124 + +1.0
355,194 + -0.3
355,194 + +1.3
355,194 + +0.4
355,194 + +0.5
355,194 + -2.5
355,194 + -1.0
355,194 + -0.2
355,195 - +0.9
355,195 - -1.1
356,013 + +0.9
356,014 - -0.3
356,024 - +1.3
356,059 + -0.1
356,059 + +0.1
356,085 + -1.5
356,155 + -0.5
356,157 + -0.3
356,235 - QEN71_RS44410 0.31 -0.7
356,246 + QEN71_RS44410 0.34 -0.9
356,247 - QEN71_RS44410 0.34 +0.8
356,284 + QEN71_RS44410 0.44 +0.1
356,284 + QEN71_RS44410 0.44 -0.8
356,284 + QEN71_RS44410 0.44 -0.6
356,284 + QEN71_RS44410 0.44 +0.4
356,284 + QEN71_RS44410 0.44 +0.6
356,406 + QEN71_RS44410 0.77 -0.0
356,407 - QEN71_RS44410 0.77 +0.1
356,420 - QEN71_RS44410 0.81 +1.6
356,491 + +0.0
356,491 + -1.5
356,491 + -0.3
356,491 + -1.2
356,491 + +0.2
356,492 - -2.8
356,492 - +0.6
356,501 - -0.2
356,531 + -0.1
356,531 + +1.5
356,531 + -1.2
356,532 - -0.2
356,532 - -0.1
356,668 - +0.7
356,803 + QEN71_RS44415 0.35 -0.3
356,803 + QEN71_RS44415 0.35 -0.8
356,803 + QEN71_RS44415 0.35 +1.3
356,803 + QEN71_RS44415 0.35 -0.1
356,803 + QEN71_RS44415 0.35 -1.2
356,803 + QEN71_RS44415 0.35 +0.1
356,804 - QEN71_RS44415 0.35 -1.4
356,804 - QEN71_RS44415 0.35 -0.5
356,804 - QEN71_RS44415 0.35 +0.5
356,804 - QEN71_RS44415 0.35 +1.2
356,958 + QEN71_RS44415 0.79 +1.1
356,958 + QEN71_RS44415 0.79 -0.2
356,958 + QEN71_RS44415 0.79 +0.1
356,958 + QEN71_RS44415 0.79 -0.9
356,958 + QEN71_RS44415 0.79 -0.2
356,959 - QEN71_RS44415 0.80 -0.1
356,959 - QEN71_RS44415 0.80 +1.1
356,959 - QEN71_RS44415 0.80 +0.3
356,974 + QEN71_RS44415 0.84 -1.8
356,994 - -0.6

Or see this region's nucleotide sequence