Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS40455 and QEN71_RS40460 are separated by 337 nucleotides QEN71_RS40460 and QEN71_RS40465 are separated by 739 nucleotides
QEN71_RS40455: QEN71_RS40455 - GHMP kinase, at 148,804 to 149,739
_RS40455
QEN71_RS40460: QEN71_RS40460 - pyridoxal-phosphate dependent enzyme, at 150,077 to 151,702
_RS40460
QEN71_RS40465: QEN71_RS40465 - GntR family transcriptional regulator, at 152,442 to 153,200
_RS40465
Position (kb) 150
151
152 Strain fitness (log2 ratio) -2
-1
0
1
2 at 149.103 kb on + strand, within QEN71_RS40455 at 149.103 kb on + strand, within QEN71_RS40455 at 149.104 kb on - strand, within QEN71_RS40455 at 149.140 kb on - strand, within QEN71_RS40455 at 149.175 kb on - strand, within QEN71_RS40455 at 149.175 kb on - strand, within QEN71_RS40455 at 149.179 kb on + strand, within QEN71_RS40455 at 149.210 kb on + strand, within QEN71_RS40455 at 149.211 kb on - strand, within QEN71_RS40455 at 149.373 kb on - strand, within QEN71_RS40455 at 149.403 kb on + strand, within QEN71_RS40455 at 149.403 kb on + strand, within QEN71_RS40455 at 149.404 kb on - strand, within QEN71_RS40455 at 149.411 kb on + strand, within QEN71_RS40455 at 149.707 kb on - strand at 149.712 kb on - strand at 149.712 kb on - strand at 149.841 kb on - strand at 149.880 kb on + strand at 149.943 kb on - strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.947 kb on + strand at 149.995 kb on + strand at 150.150 kb on + strand at 150.184 kb on - strand at 150.225 kb on + strand at 150.303 kb on - strand, within QEN71_RS40460 at 150.315 kb on + strand, within QEN71_RS40460 at 150.321 kb on + strand, within QEN71_RS40460 at 150.366 kb on + strand, within QEN71_RS40460 at 150.781 kb on - strand, within QEN71_RS40460 at 150.863 kb on + strand, within QEN71_RS40460 at 150.981 kb on + strand, within QEN71_RS40460 at 151.061 kb on + strand, within QEN71_RS40460 at 151.095 kb on + strand, within QEN71_RS40460 at 151.099 kb on + strand, within QEN71_RS40460 at 151.104 kb on + strand, within QEN71_RS40460 at 151.132 kb on + strand, within QEN71_RS40460 at 151.133 kb on - strand, within QEN71_RS40460 at 151.316 kb on + strand, within QEN71_RS40460 at 151.342 kb on + strand, within QEN71_RS40460 at 151.468 kb on + strand, within QEN71_RS40460 at 151.468 kb on + strand, within QEN71_RS40460 at 151.468 kb on + strand, within QEN71_RS40460 at 151.488 kb on + strand, within QEN71_RS40460 at 151.488 kb on + strand, within QEN71_RS40460 at 151.489 kb on - strand, within QEN71_RS40460 at 151.505 kb on + strand, within QEN71_RS40460 at 151.528 kb on - strand, within QEN71_RS40460 at 151.530 kb on + strand, within QEN71_RS40460 at 151.531 kb on - strand, within QEN71_RS40460 at 151.531 kb on - strand, within QEN71_RS40460 at 151.601 kb on - strand at 151.617 kb on - strand at 151.924 kb on + strand at 151.957 kb on - strand at 152.069 kb on + strand at 152.074 kb on - strand at 152.078 kb on + strand at 152.161 kb on + strand at 152.246 kb on - strand at 152.367 kb on - strand at 152.425 kb on + strand at 152.425 kb on + strand at 152.426 kb on - strand at 152.466 kb on - strand at 152.513 kb on + strand at 152.531 kb on + strand, within QEN71_RS40465 at 152.647 kb on + strand, within QEN71_RS40465 at 152.647 kb on + strand, within QEN71_RS40465 at 152.662 kb on + strand, within QEN71_RS40465 at 152.662 kb on + strand, within QEN71_RS40465 at 152.662 kb on + strand, within QEN71_RS40465 at 152.663 kb on - strand, within QEN71_RS40465 at 152.664 kb on + strand, within QEN71_RS40465 at 152.665 kb on - strand, within QEN71_RS40465
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 149,103 + QEN71_RS40455 0.32 -0.8 149,103 + QEN71_RS40455 0.32 -0.3 149,104 - QEN71_RS40455 0.32 -0.5 149,140 - QEN71_RS40455 0.36 +0.2 149,175 - QEN71_RS40455 0.40 -0.1 149,175 - QEN71_RS40455 0.40 -0.3 149,179 + QEN71_RS40455 0.40 -0.4 149,210 + QEN71_RS40455 0.43 -2.4 149,211 - QEN71_RS40455 0.43 +0.1 149,373 - QEN71_RS40455 0.61 +0.4 149,403 + QEN71_RS40455 0.64 -2.0 149,403 + QEN71_RS40455 0.64 +2.0 149,404 - QEN71_RS40455 0.64 -0.2 149,411 + QEN71_RS40455 0.65 +0.2 149,707 - +0.6 149,712 - +0.4 149,712 - -0.6 149,841 - -0.4 149,880 + +0.5 149,943 - -0.4 149,947 + -1.6 149,947 + -0.3 149,947 + -0.2 149,995 + -0.0 150,150 + +0.0 150,184 - -0.7 150,225 + +0.6 150,303 - QEN71_RS40460 0.14 +0.4 150,315 + QEN71_RS40460 0.15 +0.1 150,321 + QEN71_RS40460 0.15 +0.0 150,366 + QEN71_RS40460 0.18 +2.0 150,781 - QEN71_RS40460 0.43 +1.0 150,863 + QEN71_RS40460 0.48 +0.1 150,981 + QEN71_RS40460 0.56 +0.1 151,061 + QEN71_RS40460 0.61 +0.4 151,095 + QEN71_RS40460 0.63 +0.9 151,099 + QEN71_RS40460 0.63 +1.5 151,104 + QEN71_RS40460 0.63 -0.9 151,132 + QEN71_RS40460 0.65 -1.0 151,133 - QEN71_RS40460 0.65 +0.5 151,316 + QEN71_RS40460 0.76 -0.4 151,342 + QEN71_RS40460 0.78 -0.4 151,468 + QEN71_RS40460 0.86 -1.5 151,468 + QEN71_RS40460 0.86 +0.3 151,468 + QEN71_RS40460 0.86 +1.2 151,488 + QEN71_RS40460 0.87 +0.4 151,488 + QEN71_RS40460 0.87 +0.6 151,489 - QEN71_RS40460 0.87 +0.7 151,505 + QEN71_RS40460 0.88 +1.5 151,528 - QEN71_RS40460 0.89 -0.3 151,530 + QEN71_RS40460 0.89 -0.0 151,531 - QEN71_RS40460 0.89 -0.0 151,531 - QEN71_RS40460 0.89 +0.3 151,601 - +0.2 151,617 - -0.1 151,924 + -0.7 151,957 - -0.1 152,069 + +1.4 152,074 - +0.9 152,078 + +0.8 152,161 + -1.0 152,246 - -0.4 152,367 - -0.6 152,425 + +0.6 152,425 + -0.5 152,426 - +0.1 152,466 - -0.1 152,513 + -1.0 152,531 + QEN71_RS40465 0.12 -1.1 152,647 + QEN71_RS40465 0.27 -0.5 152,647 + QEN71_RS40465 0.27 +0.1 152,662 + QEN71_RS40465 0.29 -1.0 152,662 + QEN71_RS40465 0.29 +0.0 152,662 + QEN71_RS40465 0.29 -1.2 152,663 - QEN71_RS40465 0.29 -1.4 152,664 + QEN71_RS40465 0.29 +0.4 152,665 - QEN71_RS40465 0.29 +0.6
Or see this region's nucleotide sequence