Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS35325

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS35315 and QEN71_RS35320 are separated by 287 nucleotidesQEN71_RS35320 and QEN71_RS35325 are separated by 369 nucleotidesQEN71_RS35325 and QEN71_RS35330 overlap by 4 nucleotides QEN71_RS35315: QEN71_RS35315 - SET domain-containing protein-lysine N-methyltransferase, at 1,275,346 to 1,275,783 _RS35315 QEN71_RS35320: QEN71_RS35320 - HU family DNA-binding protein, at 1,276,071 to 1,276,349 _RS35320 QEN71_RS35325: QEN71_RS35325 - hypothetical protein, at 1,276,719 to 1,279,082 _RS35325 QEN71_RS35330: QEN71_RS35330 - alpha/beta fold hydrolase, at 1,279,079 to 1,280,410 _RS35330 Position (kb) 1276 1277 1278 1279 1280Strain fitness (log2 ratio) -2 -1 0 1 2at 1275.853 kb on + strandat 1275.854 kb on - strandat 1276.045 kb on + strandat 1276.046 kb on - strandat 1276.046 kb on - strandat 1276.056 kb on + strandat 1276.056 kb on + strandat 1276.277 kb on + strand, within QEN71_RS35320at 1276.278 kb on - strand, within QEN71_RS35320at 1276.642 kb on - strandat 1276.683 kb on + strandat 1276.683 kb on + strandat 1276.683 kb on + strandat 1276.743 kb on + strandat 1276.743 kb on + strandat 1276.744 kb on - strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.874 kb on + strandat 1276.875 kb on - strandat 1276.875 kb on - strandat 1276.875 kb on - strandat 1276.875 kb on - strandat 1277.015 kb on - strand, within QEN71_RS35325at 1277.021 kb on + strand, within QEN71_RS35325at 1277.021 kb on + strand, within QEN71_RS35325at 1277.021 kb on + strand, within QEN71_RS35325at 1277.022 kb on - strand, within QEN71_RS35325at 1277.022 kb on - strand, within QEN71_RS35325at 1277.022 kb on - strand, within QEN71_RS35325at 1277.054 kb on + strand, within QEN71_RS35325at 1277.055 kb on - strand, within QEN71_RS35325at 1277.112 kb on + strand, within QEN71_RS35325at 1277.112 kb on + strand, within QEN71_RS35325at 1277.112 kb on + strand, within QEN71_RS35325at 1277.113 kb on - strand, within QEN71_RS35325at 1277.113 kb on - strand, within QEN71_RS35325at 1277.113 kb on - strand, within QEN71_RS35325at 1277.113 kb on - strand, within QEN71_RS35325at 1277.113 kb on - strand, within QEN71_RS35325at 1277.172 kb on + strand, within QEN71_RS35325at 1277.351 kb on + strand, within QEN71_RS35325at 1277.351 kb on + strand, within QEN71_RS35325at 1277.351 kb on + strand, within QEN71_RS35325at 1277.351 kb on + strand, within QEN71_RS35325at 1277.351 kb on + strand, within QEN71_RS35325at 1277.351 kb on + strand, within QEN71_RS35325at 1277.351 kb on + strand, within QEN71_RS35325at 1277.351 kb on + strand, within QEN71_RS35325at 1277.352 kb on - strand, within QEN71_RS35325at 1277.352 kb on - strand, within QEN71_RS35325at 1277.352 kb on - strand, within QEN71_RS35325at 1277.451 kb on + strand, within QEN71_RS35325at 1277.533 kb on - strand, within QEN71_RS35325at 1277.533 kb on - strand, within QEN71_RS35325at 1277.533 kb on - strand, within QEN71_RS35325at 1277.533 kb on - strand, within QEN71_RS35325at 1277.535 kb on + strand, within QEN71_RS35325at 1277.536 kb on - strand, within QEN71_RS35325at 1277.536 kb on - strand, within QEN71_RS35325at 1277.709 kb on + strand, within QEN71_RS35325at 1277.710 kb on - strand, within QEN71_RS35325at 1277.723 kb on + strand, within QEN71_RS35325at 1277.723 kb on + strand, within QEN71_RS35325at 1277.724 kb on - strand, within QEN71_RS35325at 1277.724 kb on - strand, within QEN71_RS35325at 1277.841 kb on + strand, within QEN71_RS35325at 1277.841 kb on + strand, within QEN71_RS35325at 1277.853 kb on - strand, within QEN71_RS35325at 1277.957 kb on + strand, within QEN71_RS35325at 1277.957 kb on + strand, within QEN71_RS35325at 1277.957 kb on + strand, within QEN71_RS35325at 1277.958 kb on - strand, within QEN71_RS35325at 1278.065 kb on - strand, within QEN71_RS35325at 1278.278 kb on + strand, within QEN71_RS35325at 1278.414 kb on + strand, within QEN71_RS35325at 1278.414 kb on + strand, within QEN71_RS35325at 1278.415 kb on - strand, within QEN71_RS35325at 1278.415 kb on - strand, within QEN71_RS35325at 1278.547 kb on - strand, within QEN71_RS35325at 1278.547 kb on - strand, within QEN71_RS35325at 1278.577 kb on - strand, within QEN71_RS35325at 1278.577 kb on - strand, within QEN71_RS35325at 1278.577 kb on - strand, within QEN71_RS35325at 1278.725 kb on + strand, within QEN71_RS35325at 1278.730 kb on + strand, within QEN71_RS35325at 1278.731 kb on - strand, within QEN71_RS35325at 1278.731 kb on - strand, within QEN71_RS35325at 1278.731 kb on - strand, within QEN71_RS35325at 1279.277 kb on + strand, within QEN71_RS35330at 1279.300 kb on - strand, within QEN71_RS35330at 1279.308 kb on + strand, within QEN71_RS35330at 1279.308 kb on + strand, within QEN71_RS35330at 1279.380 kb on + strand, within QEN71_RS35330at 1279.380 kb on + strand, within QEN71_RS35330at 1279.381 kb on - strand, within QEN71_RS35330at 1279.381 kb on - strand, within QEN71_RS35330at 1279.486 kb on - strand, within QEN71_RS35330at 1279.701 kb on + strand, within QEN71_RS35330at 1279.702 kb on - strand, within QEN71_RS35330at 1279.766 kb on + strand, within QEN71_RS35330at 1279.777 kb on - strand, within QEN71_RS35330at 1279.806 kb on + strand, within QEN71_RS35330at 1279.807 kb on - strand, within QEN71_RS35330at 1280.075 kb on - strand, within QEN71_RS35330

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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1,275,853 + -0.3
1,275,854 - -0.3
1,276,045 + +0.2
1,276,046 - -1.3
1,276,046 - +1.4
1,276,056 + +1.9
1,276,056 + -0.6
1,276,277 + QEN71_RS35320 0.74 -0.2
1,276,278 - QEN71_RS35320 0.74 +0.8
1,276,642 - +1.1
1,276,683 + +1.1
1,276,683 + -0.9
1,276,683 + +0.8
1,276,743 + +0.5
1,276,743 + -0.5
1,276,744 - -0.7
1,276,874 + +1.4
1,276,874 + -0.6
1,276,874 + -0.3
1,276,874 + +1.0
1,276,874 + +0.5
1,276,874 + -1.0
1,276,874 + -1.0
1,276,874 + -0.3
1,276,875 - -0.1
1,276,875 - -0.7
1,276,875 - -0.5
1,276,875 - +1.7
1,277,015 - QEN71_RS35325 0.13 -0.1
1,277,021 + QEN71_RS35325 0.13 +0.3
1,277,021 + QEN71_RS35325 0.13 -1.1
1,277,021 + QEN71_RS35325 0.13 -0.5
1,277,022 - QEN71_RS35325 0.13 +0.6
1,277,022 - QEN71_RS35325 0.13 +0.5
1,277,022 - QEN71_RS35325 0.13 -0.1
1,277,054 + QEN71_RS35325 0.14 -0.9
1,277,055 - QEN71_RS35325 0.14 +1.9
1,277,112 + QEN71_RS35325 0.17 -0.4
1,277,112 + QEN71_RS35325 0.17 +0.4
1,277,112 + QEN71_RS35325 0.17 -0.8
1,277,113 - QEN71_RS35325 0.17 -0.8
1,277,113 - QEN71_RS35325 0.17 -0.7
1,277,113 - QEN71_RS35325 0.17 -0.2
1,277,113 - QEN71_RS35325 0.17 -0.8
1,277,113 - QEN71_RS35325 0.17 -0.3
1,277,172 + QEN71_RS35325 0.19 -2.1
1,277,351 + QEN71_RS35325 0.27 +0.3
1,277,351 + QEN71_RS35325 0.27 -0.6
1,277,351 + QEN71_RS35325 0.27 +1.1
1,277,351 + QEN71_RS35325 0.27 -0.2
1,277,351 + QEN71_RS35325 0.27 -0.3
1,277,351 + QEN71_RS35325 0.27 -0.9
1,277,351 + QEN71_RS35325 0.27 +0.5
1,277,351 + QEN71_RS35325 0.27 -0.3
1,277,352 - QEN71_RS35325 0.27 +0.8
1,277,352 - QEN71_RS35325 0.27 +0.4
1,277,352 - QEN71_RS35325 0.27 +0.1
1,277,451 + QEN71_RS35325 0.31 +0.6
1,277,533 - QEN71_RS35325 0.34 -0.5
1,277,533 - QEN71_RS35325 0.34 -1.1
1,277,533 - QEN71_RS35325 0.34 -1.4
1,277,533 - QEN71_RS35325 0.34 -0.9
1,277,535 + QEN71_RS35325 0.35 -0.4
1,277,536 - QEN71_RS35325 0.35 +0.8
1,277,536 - QEN71_RS35325 0.35 +0.0
1,277,709 + QEN71_RS35325 0.42 +0.8
1,277,710 - QEN71_RS35325 0.42 +0.8
1,277,723 + QEN71_RS35325 0.42 -0.7
1,277,723 + QEN71_RS35325 0.42 +1.1
1,277,724 - QEN71_RS35325 0.43 +0.4
1,277,724 - QEN71_RS35325 0.43 -1.1
1,277,841 + QEN71_RS35325 0.47 +0.9
1,277,841 + QEN71_RS35325 0.47 +1.3
1,277,853 - QEN71_RS35325 0.48 +2.1
1,277,957 + QEN71_RS35325 0.52 -0.1
1,277,957 + QEN71_RS35325 0.52 +0.7
1,277,957 + QEN71_RS35325 0.52 -0.9
1,277,958 - QEN71_RS35325 0.52 +0.6
1,278,065 - QEN71_RS35325 0.57 +0.2
1,278,278 + QEN71_RS35325 0.66 +0.3
1,278,414 + QEN71_RS35325 0.72 -0.0
1,278,414 + QEN71_RS35325 0.72 -0.3
1,278,415 - QEN71_RS35325 0.72 -0.1
1,278,415 - QEN71_RS35325 0.72 +0.1
1,278,547 - QEN71_RS35325 0.77 -0.8
1,278,547 - QEN71_RS35325 0.77 +0.0
1,278,577 - QEN71_RS35325 0.79 +0.7
1,278,577 - QEN71_RS35325 0.79 -0.1
1,278,577 - QEN71_RS35325 0.79 -0.9
1,278,725 + QEN71_RS35325 0.85 -0.4
1,278,730 + QEN71_RS35325 0.85 +0.1
1,278,731 - QEN71_RS35325 0.85 -0.9
1,278,731 - QEN71_RS35325 0.85 +0.8
1,278,731 - QEN71_RS35325 0.85 +0.4
1,279,277 + QEN71_RS35330 0.15 -0.3
1,279,300 - QEN71_RS35330 0.17 +1.5
1,279,308 + QEN71_RS35330 0.17 -0.3
1,279,308 + QEN71_RS35330 0.17 +0.8
1,279,380 + QEN71_RS35330 0.23 -0.2
1,279,380 + QEN71_RS35330 0.23 -0.8
1,279,381 - QEN71_RS35330 0.23 +0.2
1,279,381 - QEN71_RS35330 0.23 -2.0
1,279,486 - QEN71_RS35330 0.31 +0.1
1,279,701 + QEN71_RS35330 0.47 -0.6
1,279,702 - QEN71_RS35330 0.47 -0.5
1,279,766 + QEN71_RS35330 0.52 +0.6
1,279,777 - QEN71_RS35330 0.52 -1.0
1,279,806 + QEN71_RS35330 0.55 -0.7
1,279,807 - QEN71_RS35330 0.55 -0.6
1,280,075 - QEN71_RS35330 0.75 -0.7

Or see this region's nucleotide sequence