Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS33180

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS33170 and QEN71_RS33175 are separated by 186 nucleotidesQEN71_RS33175 and QEN71_RS33180 are separated by 152 nucleotidesQEN71_RS33180 and QEN71_RS33185 are separated by 3 nucleotidesQEN71_RS33185 and QEN71_RS33190 are separated by 54 nucleotides QEN71_RS33170: QEN71_RS33170 - elongation factor G, at 768,768 to 770,813 _RS33170 QEN71_RS33175: QEN71_RS33175 - DsbA family oxidoreductase, at 771,000 to 771,653 _RS33175 QEN71_RS33180: QEN71_RS33180 - cytochrome b/b6 domain-containing protein, at 771,806 to 772,399 _RS33180 QEN71_RS33185: QEN71_RS33185 - molybdopterin-dependent oxidoreductase, at 772,403 to 773,194 _RS33185 QEN71_RS33190: QEN71_RS33190 - hypothetical protein, at 773,249 to 773,866 _RS33190 Position (kb) 771 772 773Strain fitness (log2 ratio) -2 -1 0 1 2at 770.807 kb on - strandat 770.848 kb on + strandat 770.848 kb on + strandat 770.904 kb on + strandat 770.956 kb on + strandat 770.957 kb on - strandat 771.035 kb on + strandat 771.036 kb on - strandat 771.073 kb on + strand, within QEN71_RS33175at 771.073 kb on + strand, within QEN71_RS33175at 771.180 kb on + strand, within QEN71_RS33175at 771.180 kb on + strand, within QEN71_RS33175at 771.180 kb on + strand, within QEN71_RS33175at 771.195 kb on + strand, within QEN71_RS33175at 771.267 kb on - strand, within QEN71_RS33175at 771.267 kb on - strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.285 kb on + strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.286 kb on - strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.291 kb on + strand, within QEN71_RS33175at 771.292 kb on - strand, within QEN71_RS33175at 771.292 kb on - strand, within QEN71_RS33175at 771.332 kb on + strand, within QEN71_RS33175at 771.378 kb on + strand, within QEN71_RS33175at 771.455 kb on + strand, within QEN71_RS33175at 771.486 kb on + strand, within QEN71_RS33175at 771.520 kb on - strand, within QEN71_RS33175at 771.520 kb on - strand, within QEN71_RS33175at 771.520 kb on - strand, within QEN71_RS33175at 771.651 kb on + strandat 771.715 kb on + strandat 771.716 kb on - strandat 771.902 kb on + strand, within QEN71_RS33180at 772.154 kb on + strand, within QEN71_RS33180at 772.154 kb on + strand, within QEN71_RS33180at 772.178 kb on + strand, within QEN71_RS33180at 772.277 kb on + strand, within QEN71_RS33180at 772.638 kb on + strand, within QEN71_RS33185at 772.639 kb on - strand, within QEN71_RS33185at 772.639 kb on - strand, within QEN71_RS33185at 772.712 kb on + strand, within QEN71_RS33185at 772.712 kb on + strand, within QEN71_RS33185at 772.713 kb on - strand, within QEN71_RS33185at 772.713 kb on - strand, within QEN71_RS33185at 772.751 kb on + strand, within QEN71_RS33185at 772.752 kb on - strand, within QEN71_RS33185at 772.752 kb on - strand, within QEN71_RS33185at 772.837 kb on + strand, within QEN71_RS33185at 772.846 kb on + strand, within QEN71_RS33185at 772.846 kb on + strand, within QEN71_RS33185at 772.928 kb on - strand, within QEN71_RS33185at 772.940 kb on + strand, within QEN71_RS33185at 772.940 kb on + strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.941 kb on - strand, within QEN71_RS33185at 772.944 kb on + strand, within QEN71_RS33185at 772.944 kb on + strand, within QEN71_RS33185at 772.944 kb on + strand, within QEN71_RS33185at 772.945 kb on - strand, within QEN71_RS33185at 772.945 kb on - strand, within QEN71_RS33185at 772.945 kb on - strand, within QEN71_RS33185at 772.967 kb on + strand, within QEN71_RS33185at 772.967 kb on + strand, within QEN71_RS33185at 772.968 kb on - strand, within QEN71_RS33185at 773.027 kb on + strand, within QEN71_RS33185at 773.027 kb on + strand, within QEN71_RS33185at 773.027 kb on + strand, within QEN71_RS33185at 773.027 kb on + strand, within QEN71_RS33185at 773.028 kb on - strand, within QEN71_RS33185at 773.028 kb on - strand, within QEN71_RS33185at 773.055 kb on - strand, within QEN71_RS33185at 773.096 kb on + strand, within QEN71_RS33185at 773.097 kb on - strand, within QEN71_RS33185at 773.097 kb on - strand, within QEN71_RS33185at 773.171 kb on + strandat 773.171 kb on + strandat 773.171 kb on + strandat 773.171 kb on + strandat 773.172 kb on - strandat 773.219 kb on + strandat 773.248 kb on + strandat 773.249 kb on - strandat 773.249 kb on - strandat 773.249 kb on - strandat 773.249 kb on - strandat 773.374 kb on + strand, within QEN71_RS33190at 773.374 kb on + strand, within QEN71_RS33190at 773.375 kb on - strand, within QEN71_RS33190

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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770,807 - +0.3
770,848 + -0.3
770,848 + +1.6
770,904 + -0.2
770,956 + +0.1
770,957 - -0.1
771,035 + -0.4
771,036 - +2.1
771,073 + QEN71_RS33175 0.11 -0.3
771,073 + QEN71_RS33175 0.11 -0.6
771,180 + QEN71_RS33175 0.28 +0.4
771,180 + QEN71_RS33175 0.28 +1.0
771,180 + QEN71_RS33175 0.28 -1.4
771,195 + QEN71_RS33175 0.30 +0.8
771,267 - QEN71_RS33175 0.41 -1.7
771,267 - QEN71_RS33175 0.41 -0.7
771,285 + QEN71_RS33175 0.44 +0.3
771,285 + QEN71_RS33175 0.44 -0.8
771,285 + QEN71_RS33175 0.44 +0.1
771,285 + QEN71_RS33175 0.44 -0.4
771,285 + QEN71_RS33175 0.44 -0.3
771,286 - QEN71_RS33175 0.44 -0.5
771,286 - QEN71_RS33175 0.44 +0.1
771,286 - QEN71_RS33175 0.44 -0.7
771,286 - QEN71_RS33175 0.44 -1.3
771,286 - QEN71_RS33175 0.44 -1.1
771,286 - QEN71_RS33175 0.44 -0.9
771,286 - QEN71_RS33175 0.44 -0.5
771,291 + QEN71_RS33175 0.44 -0.9
771,291 + QEN71_RS33175 0.44 -1.6
771,291 + QEN71_RS33175 0.44 -1.1
771,291 + QEN71_RS33175 0.44 -0.9
771,292 - QEN71_RS33175 0.45 -1.3
771,292 - QEN71_RS33175 0.45 +0.5
771,332 + QEN71_RS33175 0.51 +1.0
771,378 + QEN71_RS33175 0.58 +0.1
771,455 + QEN71_RS33175 0.70 +0.1
771,486 + QEN71_RS33175 0.74 +0.3
771,520 - QEN71_RS33175 0.80 -1.1
771,520 - QEN71_RS33175 0.80 +0.8
771,520 - QEN71_RS33175 0.80 +0.3
771,651 + +0.3
771,715 + +0.2
771,716 - -0.1
771,902 + QEN71_RS33180 0.16 +0.5
772,154 + QEN71_RS33180 0.59 +1.1
772,154 + QEN71_RS33180 0.59 -0.5
772,178 + QEN71_RS33180 0.63 -0.1
772,277 + QEN71_RS33180 0.79 -0.2
772,638 + QEN71_RS33185 0.30 -0.8
772,639 - QEN71_RS33185 0.30 -0.3
772,639 - QEN71_RS33185 0.30 -0.8
772,712 + QEN71_RS33185 0.39 -0.7
772,712 + QEN71_RS33185 0.39 +0.2
772,713 - QEN71_RS33185 0.39 -0.1
772,713 - QEN71_RS33185 0.39 +0.4
772,751 + QEN71_RS33185 0.44 -0.6
772,752 - QEN71_RS33185 0.44 +0.6
772,752 - QEN71_RS33185 0.44 -0.2
772,837 + QEN71_RS33185 0.55 -0.7
772,846 + QEN71_RS33185 0.56 +0.2
772,846 + QEN71_RS33185 0.56 -0.2
772,928 - QEN71_RS33185 0.66 -0.6
772,940 + QEN71_RS33185 0.68 -0.4
772,940 + QEN71_RS33185 0.68 +0.7
772,941 - QEN71_RS33185 0.68 -0.0
772,941 - QEN71_RS33185 0.68 -0.4
772,941 - QEN71_RS33185 0.68 -0.7
772,941 - QEN71_RS33185 0.68 +0.3
772,941 - QEN71_RS33185 0.68 -2.2
772,941 - QEN71_RS33185 0.68 +0.7
772,944 + QEN71_RS33185 0.68 -0.3
772,944 + QEN71_RS33185 0.68 +0.6
772,944 + QEN71_RS33185 0.68 -0.0
772,945 - QEN71_RS33185 0.68 +0.9
772,945 - QEN71_RS33185 0.68 +1.1
772,945 - QEN71_RS33185 0.68 +1.2
772,967 + QEN71_RS33185 0.71 +0.8
772,967 + QEN71_RS33185 0.71 +0.8
772,968 - QEN71_RS33185 0.71 +0.3
773,027 + QEN71_RS33185 0.79 +0.7
773,027 + QEN71_RS33185 0.79 +0.5
773,027 + QEN71_RS33185 0.79 +0.1
773,027 + QEN71_RS33185 0.79 +0.3
773,028 - QEN71_RS33185 0.79 +0.0
773,028 - QEN71_RS33185 0.79 +0.2
773,055 - QEN71_RS33185 0.82 +0.0
773,096 + QEN71_RS33185 0.88 +0.1
773,097 - QEN71_RS33185 0.88 -0.2
773,097 - QEN71_RS33185 0.88 -0.8
773,171 + +0.9
773,171 + -0.8
773,171 + +0.8
773,171 + -0.5
773,172 - +0.5
773,219 + -0.6
773,248 + +0.3
773,249 - +0.5
773,249 - -0.6
773,249 - +1.1
773,249 - -0.8
773,374 + QEN71_RS33190 0.20 -1.4
773,374 + QEN71_RS33190 0.20 -1.3
773,375 - QEN71_RS33190 0.20 -0.7

Or see this region's nucleotide sequence