Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS33020 and QEN71_RS33025 are separated by 32 nucleotides QEN71_RS33025 and QEN71_RS33030 are separated by 749 nucleotides
QEN71_RS33020: QEN71_RS33020 - putrescine-ornithine antiporter, at 735,491 to 737,740
_RS33020
QEN71_RS33025: QEN71_RS33025 - ornithine decarboxylase, at 737,773 to 740,136
_RS33025
QEN71_RS33030: QEN71_RS33030 - hypothetical protein, at 740,886 to 741,152
_RS33030
Position (kb) 737
738
739
740
741 Strain fitness (log2 ratio) -2
-1
0
1 at 736.939 kb on + strand, within QEN71_RS33020 at 736.939 kb on + strand, within QEN71_RS33020 at 736.940 kb on - strand, within QEN71_RS33020 at 736.940 kb on - strand, within QEN71_RS33020 at 737.028 kb on + strand, within QEN71_RS33020 at 737.029 kb on - strand, within QEN71_RS33020 at 737.029 kb on - strand, within QEN71_RS33020 at 737.469 kb on + strand, within QEN71_RS33020 at 737.490 kb on + strand, within QEN71_RS33020 at 737.505 kb on + strand, within QEN71_RS33020 at 737.506 kb on - strand, within QEN71_RS33020 at 737.634 kb on - strand at 737.774 kb on + strand at 737.789 kb on + strand at 737.789 kb on + strand at 737.790 kb on - strand at 737.790 kb on - strand at 737.895 kb on - strand at 737.895 kb on - strand at 737.964 kb on - strand at 738.018 kb on - strand, within QEN71_RS33025 at 738.048 kb on - strand, within QEN71_RS33025 at 738.158 kb on - strand, within QEN71_RS33025 at 738.374 kb on + strand, within QEN71_RS33025 at 738.414 kb on - strand, within QEN71_RS33025 at 738.479 kb on + strand, within QEN71_RS33025 at 738.498 kb on + strand, within QEN71_RS33025 at 738.498 kb on + strand, within QEN71_RS33025 at 738.500 kb on + strand, within QEN71_RS33025 at 738.618 kb on - strand, within QEN71_RS33025 at 738.879 kb on - strand, within QEN71_RS33025 at 738.917 kb on - strand, within QEN71_RS33025 at 739.079 kb on + strand, within QEN71_RS33025 at 739.079 kb on + strand, within QEN71_RS33025 at 739.451 kb on + strand, within QEN71_RS33025 at 739.451 kb on + strand, within QEN71_RS33025 at 739.451 kb on + strand, within QEN71_RS33025 at 739.452 kb on - strand, within QEN71_RS33025 at 739.452 kb on - strand, within QEN71_RS33025 at 739.757 kb on + strand, within QEN71_RS33025 at 739.781 kb on + strand, within QEN71_RS33025 at 739.782 kb on - strand, within QEN71_RS33025 at 739.782 kb on - strand, within QEN71_RS33025 at 739.782 kb on - strand, within QEN71_RS33025 at 739.786 kb on - strand, within QEN71_RS33025 at 739.786 kb on - strand, within QEN71_RS33025 at 739.787 kb on + strand, within QEN71_RS33025 at 739.788 kb on - strand, within QEN71_RS33025 at 739.941 kb on + strand at 739.941 kb on + strand at 739.941 kb on + strand at 739.943 kb on + strand at 739.943 kb on + strand at 739.943 kb on + strand at 740.083 kb on + strand at 740.083 kb on + strand at 740.084 kb on - strand at 740.297 kb on - strand at 740.306 kb on - strand at 740.320 kb on - strand at 740.410 kb on - strand at 740.427 kb on + strand at 740.431 kb on + strand at 740.431 kb on + strand at 740.585 kb on - strand at 740.701 kb on - strand at 740.701 kb on - strand at 740.703 kb on - strand at 740.703 kb on - strand at 740.704 kb on + strand at 740.811 kb on - strand at 740.811 kb on - strand at 740.811 kb on - strand at 740.990 kb on + strand, within QEN71_RS33030
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 736,939 + QEN71_RS33020 0.64 +0.7 736,939 + QEN71_RS33020 0.64 -1.1 736,940 - QEN71_RS33020 0.64 +1.0 736,940 - QEN71_RS33020 0.64 +1.3 737,028 + QEN71_RS33020 0.68 -2.0 737,029 - QEN71_RS33020 0.68 -0.8 737,029 - QEN71_RS33020 0.68 +0.3 737,469 + QEN71_RS33020 0.88 +0.6 737,490 + QEN71_RS33020 0.89 -0.8 737,505 + QEN71_RS33020 0.90 -1.6 737,506 - QEN71_RS33020 0.90 +1.4 737,634 - +0.0 737,774 + -0.1 737,789 + -0.2 737,789 + +0.5 737,790 - -0.8 737,790 - +0.8 737,895 - +0.1 737,895 - -0.3 737,964 - -1.1 738,018 - QEN71_RS33025 0.10 +0.6 738,048 - QEN71_RS33025 0.12 -2.2 738,158 - QEN71_RS33025 0.16 +0.1 738,374 + QEN71_RS33025 0.25 +0.4 738,414 - QEN71_RS33025 0.27 +0.8 738,479 + QEN71_RS33025 0.30 +0.4 738,498 + QEN71_RS33025 0.31 -0.0 738,498 + QEN71_RS33025 0.31 -0.1 738,500 + QEN71_RS33025 0.31 -0.2 738,618 - QEN71_RS33025 0.36 -0.5 738,879 - QEN71_RS33025 0.47 -0.4 738,917 - QEN71_RS33025 0.48 -0.5 739,079 + QEN71_RS33025 0.55 +1.4 739,079 + QEN71_RS33025 0.55 -1.5 739,451 + QEN71_RS33025 0.71 -1.9 739,451 + QEN71_RS33025 0.71 +1.1 739,451 + QEN71_RS33025 0.71 +0.6 739,452 - QEN71_RS33025 0.71 +1.0 739,452 - QEN71_RS33025 0.71 +1.4 739,757 + QEN71_RS33025 0.84 -0.4 739,781 + QEN71_RS33025 0.85 +0.3 739,782 - QEN71_RS33025 0.85 -0.3 739,782 - QEN71_RS33025 0.85 -0.9 739,782 - QEN71_RS33025 0.85 +0.3 739,786 - QEN71_RS33025 0.85 +1.1 739,786 - QEN71_RS33025 0.85 -0.1 739,787 + QEN71_RS33025 0.85 -0.1 739,788 - QEN71_RS33025 0.85 -1.5 739,941 + -0.5 739,941 + -0.8 739,941 + -1.7 739,943 + -1.4 739,943 + -1.1 739,943 + +0.8 740,083 + +1.2 740,083 + +0.3 740,084 - -0.3 740,297 - -1.1 740,306 - -0.8 740,320 - +1.1 740,410 - -1.5 740,427 + +0.9 740,431 + +0.9 740,431 + -1.1 740,585 - -1.6 740,701 - +0.4 740,701 - -0.3 740,703 - +1.5 740,703 - +0.6 740,704 + -1.0 740,811 - +1.3 740,811 - -0.8 740,811 - -0.6 740,990 + QEN71_RS33030 0.39 -0.3
Or see this region's nucleotide sequence