Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS32130 and QEN71_RS32135 are separated by 49 nucleotides QEN71_RS32135 and QEN71_RS32140 are separated by 526 nucleotides
QEN71_RS32130: QEN71_RS32130 - LysR substrate-binding domain-containing protein, at 549,492 to 550,739
_RS32130
QEN71_RS32135: QEN71_RS32135 - GntR family transcriptional regulator, at 550,789 to 551,490
_RS32135
QEN71_RS32140: QEN71_RS32140 - porin, at 552,017 to 553,237
_RS32140
Position (kb) 550
551
552 Strain fitness (log2 ratio) -2
-1
0
1
2 at 549.920 kb on + strand, within QEN71_RS32130 at 550.033 kb on + strand, within QEN71_RS32130 at 550.368 kb on - strand, within QEN71_RS32130 at 550.420 kb on - strand, within QEN71_RS32130 at 550.423 kb on + strand, within QEN71_RS32130 at 550.424 kb on - strand, within QEN71_RS32130 at 550.424 kb on - strand, within QEN71_RS32130 at 550.424 kb on - strand, within QEN71_RS32130 at 550.850 kb on - strand at 550.850 kb on - strand at 550.940 kb on + strand, within QEN71_RS32135 at 550.992 kb on + strand, within QEN71_RS32135 at 551.249 kb on - strand, within QEN71_RS32135 at 551.267 kb on - strand, within QEN71_RS32135 at 551.267 kb on - strand, within QEN71_RS32135 at 551.297 kb on + strand, within QEN71_RS32135 at 551.392 kb on + strand, within QEN71_RS32135 at 551.393 kb on - strand, within QEN71_RS32135 at 551.490 kb on + strand at 551.490 kb on + strand at 551.491 kb on - strand at 551.499 kb on - strand at 551.516 kb on + strand at 551.519 kb on - strand at 551.550 kb on + strand at 551.551 kb on - strand at 551.552 kb on + strand at 551.739 kb on + strand at 551.739 kb on + strand at 551.740 kb on - strand at 551.759 kb on + strand at 551.781 kb on + strand at 551.781 kb on + strand at 551.970 kb on - strand at 551.970 kb on - strand at 551.990 kb on - strand at 552.317 kb on + strand, within QEN71_RS32140 at 552.347 kb on + strand, within QEN71_RS32140 at 552.347 kb on + strand, within QEN71_RS32140 at 552.372 kb on - strand, within QEN71_RS32140 at 552.408 kb on - strand, within QEN71_RS32140 at 552.459 kb on - strand, within QEN71_RS32140 at 552.459 kb on - strand, within QEN71_RS32140 at 552.459 kb on - strand, within QEN71_RS32140
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 549,920 + QEN71_RS32130 0.34 -0.0 550,033 + QEN71_RS32130 0.43 -0.1 550,368 - QEN71_RS32130 0.70 -1.0 550,420 - QEN71_RS32130 0.74 +0.5 550,423 + QEN71_RS32130 0.75 -0.4 550,424 - QEN71_RS32130 0.75 -0.6 550,424 - QEN71_RS32130 0.75 -0.2 550,424 - QEN71_RS32130 0.75 -0.3 550,850 - -0.3 550,850 - +0.3 550,940 + QEN71_RS32135 0.22 -0.3 550,992 + QEN71_RS32135 0.29 -1.3 551,249 - QEN71_RS32135 0.66 +0.7 551,267 - QEN71_RS32135 0.68 -1.0 551,267 - QEN71_RS32135 0.68 +1.1 551,297 + QEN71_RS32135 0.72 +0.9 551,392 + QEN71_RS32135 0.86 +0.9 551,393 - QEN71_RS32135 0.86 -0.1 551,490 + -0.1 551,490 + -1.4 551,491 - +0.5 551,499 - -1.3 551,516 + -2.2 551,519 - -0.2 551,550 + +0.4 551,551 - -1.5 551,552 + +0.4 551,739 + -0.9 551,739 + -0.1 551,740 - -0.1 551,759 + -0.1 551,781 + -0.8 551,781 + +0.3 551,970 - +0.0 551,970 - +0.9 551,990 - -0.6 552,317 + QEN71_RS32140 0.25 +1.8 552,347 + QEN71_RS32140 0.27 -0.6 552,347 + QEN71_RS32140 0.27 +0.5 552,372 - QEN71_RS32140 0.29 -1.2 552,408 - QEN71_RS32140 0.32 -0.2 552,459 - QEN71_RS32140 0.36 +0.1 552,459 - QEN71_RS32140 0.36 -0.3 552,459 - QEN71_RS32140 0.36 -0.2
Or see this region's nucleotide sequence