Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31720 and QEN71_RS31725 are separated by 42 nucleotides QEN71_RS31725 and QEN71_RS31730 are separated by 13 nucleotides
QEN71_RS31720: QEN71_RS31720 - type VI secretion system baseplate subunit TssG, at 463,458 to 464,543
_RS31720
QEN71_RS31725: QEN71_RS31725 - type VI secretion system ATPase TssH, at 464,586 to 467,240
_RS31725
QEN71_RS31730: QEN71_RS31730 - type VI secretion system protein TssA, at 467,254 to 468,384
_RS31730
Position (kb) 464
465
466
467
468 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 463.675 kb on - strand, within QEN71_RS31720 at 463.809 kb on + strand, within QEN71_RS31720 at 463.809 kb on + strand, within QEN71_RS31720 at 463.809 kb on + strand, within QEN71_RS31720 at 463.809 kb on + strand, within QEN71_RS31720 at 463.810 kb on - strand, within QEN71_RS31720 at 463.905 kb on + strand, within QEN71_RS31720 at 463.906 kb on - strand, within QEN71_RS31720 at 463.906 kb on - strand, within QEN71_RS31720 at 463.923 kb on + strand, within QEN71_RS31720 at 463.923 kb on + strand, within QEN71_RS31720 at 463.923 kb on + strand, within QEN71_RS31720 at 463.924 kb on - strand, within QEN71_RS31720 at 463.924 kb on - strand, within QEN71_RS31720 at 463.924 kb on - strand, within QEN71_RS31720 at 463.924 kb on - strand, within QEN71_RS31720 at 463.941 kb on + strand, within QEN71_RS31720 at 463.965 kb on + strand, within QEN71_RS31720 at 463.965 kb on + strand, within QEN71_RS31720 at 463.965 kb on + strand, within QEN71_RS31720 at 463.966 kb on - strand, within QEN71_RS31720 at 464.106 kb on + strand, within QEN71_RS31720 at 464.106 kb on + strand, within QEN71_RS31720 at 464.107 kb on - strand, within QEN71_RS31720 at 464.107 kb on - strand, within QEN71_RS31720 at 464.175 kb on + strand, within QEN71_RS31720 at 464.176 kb on - strand, within QEN71_RS31720 at 464.176 kb on - strand, within QEN71_RS31720 at 464.313 kb on + strand, within QEN71_RS31720 at 464.313 kb on + strand, within QEN71_RS31720 at 464.313 kb on + strand, within QEN71_RS31720 at 464.314 kb on - strand, within QEN71_RS31720 at 464.314 kb on - strand, within QEN71_RS31720 at 464.314 kb on - strand, within QEN71_RS31720 at 464.395 kb on - strand, within QEN71_RS31720 at 464.410 kb on + strand, within QEN71_RS31720 at 464.410 kb on + strand, within QEN71_RS31720 at 464.462 kb on - strand at 464.462 kb on - strand at 464.552 kb on + strand at 464.552 kb on + strand at 464.552 kb on + strand at 464.553 kb on - strand at 464.553 kb on - strand at 464.553 kb on - strand at 464.553 kb on - strand at 464.553 kb on - strand at 464.553 kb on - strand at 464.553 kb on - strand at 464.580 kb on + strand at 464.581 kb on - strand at 464.581 kb on - strand at 464.581 kb on - strand at 464.682 kb on + strand at 464.682 kb on + strand at 464.682 kb on + strand at 464.683 kb on - strand at 464.683 kb on - strand at 464.683 kb on - strand at 464.749 kb on + strand at 464.750 kb on - strand at 464.867 kb on - strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.981 kb on + strand, within QEN71_RS31725 at 464.982 kb on - strand, within QEN71_RS31725 at 464.982 kb on - strand, within QEN71_RS31725 at 464.982 kb on - strand, within QEN71_RS31725 at 464.982 kb on - strand, within QEN71_RS31725 at 464.982 kb on - strand, within QEN71_RS31725 at 464.982 kb on - strand, within QEN71_RS31725 at 465.004 kb on + strand, within QEN71_RS31725 at 465.004 kb on + strand, within QEN71_RS31725 at 465.004 kb on + strand, within QEN71_RS31725 at 465.004 kb on + strand, within QEN71_RS31725 at 465.005 kb on - strand, within QEN71_RS31725 at 465.005 kb on - strand, within QEN71_RS31725 at 465.005 kb on - strand, within QEN71_RS31725 at 465.005 kb on - strand, within QEN71_RS31725 at 465.153 kb on + strand, within QEN71_RS31725 at 465.153 kb on + strand, within QEN71_RS31725 at 465.153 kb on + strand, within QEN71_RS31725 at 465.153 kb on + strand, within QEN71_RS31725 at 465.153 kb on + strand, within QEN71_RS31725 at 465.154 kb on - strand, within QEN71_RS31725 at 465.154 kb on - strand, within QEN71_RS31725 at 465.154 kb on - strand, within QEN71_RS31725 at 465.154 kb on - strand, within QEN71_RS31725 at 465.296 kb on + strand, within QEN71_RS31725 at 465.297 kb on - strand, within QEN71_RS31725 at 465.379 kb on + strand, within QEN71_RS31725 at 465.379 kb on + strand, within QEN71_RS31725 at 465.380 kb on - strand, within QEN71_RS31725 at 465.491 kb on + strand, within QEN71_RS31725 at 465.506 kb on + strand, within QEN71_RS31725 at 465.507 kb on - strand, within QEN71_RS31725 at 465.618 kb on + strand, within QEN71_RS31725 at 465.619 kb on - strand, within QEN71_RS31725 at 465.627 kb on + strand, within QEN71_RS31725 at 465.628 kb on - strand, within QEN71_RS31725 at 465.801 kb on + strand, within QEN71_RS31725 at 465.801 kb on + strand, within QEN71_RS31725 at 465.801 kb on + strand, within QEN71_RS31725 at 465.801 kb on + strand, within QEN71_RS31725 at 465.801 kb on + strand, within QEN71_RS31725 at 465.801 kb on + strand, within QEN71_RS31725 at 465.802 kb on - strand, within QEN71_RS31725 at 465.802 kb on - strand, within QEN71_RS31725 at 465.802 kb on - strand, within QEN71_RS31725 at 465.803 kb on + strand, within QEN71_RS31725 at 466.307 kb on + strand, within QEN71_RS31725 at 466.496 kb on + strand, within QEN71_RS31725 at 466.594 kb on - strand, within QEN71_RS31725 at 466.648 kb on - strand, within QEN71_RS31725 at 466.648 kb on - strand, within QEN71_RS31725 at 466.694 kb on - strand, within QEN71_RS31725 at 466.769 kb on + strand, within QEN71_RS31725 at 466.770 kb on - strand, within QEN71_RS31725 at 466.770 kb on - strand, within QEN71_RS31725 at 466.770 kb on - strand, within QEN71_RS31725 at 466.890 kb on + strand, within QEN71_RS31725 at 466.890 kb on + strand, within QEN71_RS31725 at 466.890 kb on + strand, within QEN71_RS31725 at 466.890 kb on + strand, within QEN71_RS31725 at 466.891 kb on - strand, within QEN71_RS31725 at 466.891 kb on - strand, within QEN71_RS31725 at 467.075 kb on + strand at 467.075 kb on + strand at 467.076 kb on - strand at 467.076 kb on - strand at 467.163 kb on - strand at 467.163 kb on - strand at 467.226 kb on + strand at 467.227 kb on - strand at 467.227 kb on - strand at 467.271 kb on + strand at 467.271 kb on + strand at 467.272 kb on - strand at 467.272 kb on - strand at 467.272 kb on - strand at 467.290 kb on - strand at 467.542 kb on + strand, within QEN71_RS31730 at 467.542 kb on + strand, within QEN71_RS31730 at 467.543 kb on - strand, within QEN71_RS31730 at 467.652 kb on + strand, within QEN71_RS31730 at 467.748 kb on + strand, within QEN71_RS31730 at 467.749 kb on - strand, within QEN71_RS31730 at 467.845 kb on + strand, within QEN71_RS31730 at 467.845 kb on + strand, within QEN71_RS31730 at 467.845 kb on + strand, within QEN71_RS31730 at 467.846 kb on - strand, within QEN71_RS31730 at 467.846 kb on - strand, within QEN71_RS31730 at 467.962 kb on + strand, within QEN71_RS31730 at 467.974 kb on + strand, within QEN71_RS31730 at 467.974 kb on + strand, within QEN71_RS31730 at 467.975 kb on - strand, within QEN71_RS31730 at 468.016 kb on - strand, within QEN71_RS31730 at 468.016 kb on - strand, within QEN71_RS31730 at 468.024 kb on + strand, within QEN71_RS31730 at 468.025 kb on - strand, within QEN71_RS31730 at 468.025 kb on - strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.129 kb on + strand, within QEN71_RS31730 at 468.130 kb on - strand, within QEN71_RS31730 at 468.130 kb on - strand, within QEN71_RS31730 at 468.130 kb on - strand, within QEN71_RS31730 at 468.130 kb on - strand, within QEN71_RS31730 at 468.138 kb on + strand, within QEN71_RS31730 at 468.138 kb on + strand, within QEN71_RS31730 at 468.139 kb on - strand, within QEN71_RS31730 at 468.139 kb on - strand, within QEN71_RS31730 at 468.139 kb on - strand, within QEN71_RS31730 at 468.228 kb on + strand, within QEN71_RS31730 at 468.229 kb on - strand, within QEN71_RS31730
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 463,675 - QEN71_RS31720 0.20 -1.7 463,809 + QEN71_RS31720 0.32 -0.3 463,809 + QEN71_RS31720 0.32 -2.0 463,809 + QEN71_RS31720 0.32 +0.6 463,809 + QEN71_RS31720 0.32 +0.1 463,810 - QEN71_RS31720 0.32 -0.1 463,905 + QEN71_RS31720 0.41 +0.7 463,906 - QEN71_RS31720 0.41 +1.0 463,906 - QEN71_RS31720 0.41 +1.5 463,923 + QEN71_RS31720 0.43 -0.3 463,923 + QEN71_RS31720 0.43 -0.8 463,923 + QEN71_RS31720 0.43 -0.6 463,924 - QEN71_RS31720 0.43 -0.7 463,924 - QEN71_RS31720 0.43 -0.7 463,924 - QEN71_RS31720 0.43 +1.3 463,924 - QEN71_RS31720 0.43 -1.0 463,941 + QEN71_RS31720 0.44 +0.7 463,965 + QEN71_RS31720 0.47 -0.0 463,965 + QEN71_RS31720 0.47 -0.6 463,965 + QEN71_RS31720 0.47 +0.0 463,966 - QEN71_RS31720 0.47 +0.5 464,106 + QEN71_RS31720 0.60 -0.4 464,106 + QEN71_RS31720 0.60 -1.2 464,107 - QEN71_RS31720 0.60 +0.0 464,107 - QEN71_RS31720 0.60 +0.0 464,175 + QEN71_RS31720 0.66 +0.0 464,176 - QEN71_RS31720 0.66 +0.9 464,176 - QEN71_RS31720 0.66 +0.8 464,313 + QEN71_RS31720 0.79 +2.2 464,313 + QEN71_RS31720 0.79 -0.1 464,313 + QEN71_RS31720 0.79 -0.0 464,314 - QEN71_RS31720 0.79 +0.2 464,314 - QEN71_RS31720 0.79 +1.6 464,314 - QEN71_RS31720 0.79 -0.2 464,395 - QEN71_RS31720 0.86 -0.2 464,410 + QEN71_RS31720 0.88 -1.2 464,410 + QEN71_RS31720 0.88 +0.2 464,462 - +0.5 464,462 - +0.3 464,552 + -0.9 464,552 + +1.6 464,552 + +0.2 464,553 - +0.4 464,553 - +0.0 464,553 - -1.2 464,553 - -0.3 464,553 - +0.2 464,553 - -0.4 464,553 - +1.8 464,580 + +0.2 464,581 - -2.0 464,581 - +0.3 464,581 - +1.1 464,682 + -2.8 464,682 + -0.3 464,682 + -0.5 464,683 - +0.6 464,683 - -0.4 464,683 - -0.1 464,749 + -1.4 464,750 - +0.5 464,867 - QEN71_RS31725 0.11 +0.1 464,981 + QEN71_RS31725 0.15 -0.1 464,981 + QEN71_RS31725 0.15 +0.5 464,981 + QEN71_RS31725 0.15 +0.4 464,981 + QEN71_RS31725 0.15 +1.3 464,981 + QEN71_RS31725 0.15 -1.1 464,981 + QEN71_RS31725 0.15 +0.8 464,981 + QEN71_RS31725 0.15 -0.3 464,981 + QEN71_RS31725 0.15 +0.2 464,981 + QEN71_RS31725 0.15 +0.6 464,981 + QEN71_RS31725 0.15 +1.0 464,981 + QEN71_RS31725 0.15 +1.7 464,981 + QEN71_RS31725 0.15 -1.3 464,982 - QEN71_RS31725 0.15 +0.2 464,982 - QEN71_RS31725 0.15 -1.0 464,982 - QEN71_RS31725 0.15 +0.1 464,982 - QEN71_RS31725 0.15 -1.1 464,982 - QEN71_RS31725 0.15 +0.1 464,982 - QEN71_RS31725 0.15 -0.2 465,004 + QEN71_RS31725 0.16 -0.4 465,004 + QEN71_RS31725 0.16 +0.3 465,004 + QEN71_RS31725 0.16 -1.5 465,004 + QEN71_RS31725 0.16 +1.0 465,005 - QEN71_RS31725 0.16 -0.4 465,005 - QEN71_RS31725 0.16 -0.3 465,005 - QEN71_RS31725 0.16 -0.3 465,005 - QEN71_RS31725 0.16 -0.5 465,153 + QEN71_RS31725 0.21 +1.4 465,153 + QEN71_RS31725 0.21 -1.3 465,153 + QEN71_RS31725 0.21 +1.1 465,153 + QEN71_RS31725 0.21 +0.8 465,153 + QEN71_RS31725 0.21 +0.6 465,154 - QEN71_RS31725 0.21 -0.1 465,154 - QEN71_RS31725 0.21 +0.8 465,154 - QEN71_RS31725 0.21 +0.7 465,154 - QEN71_RS31725 0.21 -0.2 465,296 + QEN71_RS31725 0.27 +1.6 465,297 - QEN71_RS31725 0.27 -1.4 465,379 + QEN71_RS31725 0.30 -0.3 465,379 + QEN71_RS31725 0.30 -0.2 465,380 - QEN71_RS31725 0.30 -0.4 465,491 + QEN71_RS31725 0.34 +0.7 465,506 + QEN71_RS31725 0.35 -2.5 465,507 - QEN71_RS31725 0.35 +0.7 465,618 + QEN71_RS31725 0.39 -0.1 465,619 - QEN71_RS31725 0.39 +0.7 465,627 + QEN71_RS31725 0.39 -1.0 465,628 - QEN71_RS31725 0.39 +0.8 465,801 + QEN71_RS31725 0.46 +0.5 465,801 + QEN71_RS31725 0.46 -0.0 465,801 + QEN71_RS31725 0.46 -0.8 465,801 + QEN71_RS31725 0.46 -0.5 465,801 + QEN71_RS31725 0.46 +0.6 465,801 + QEN71_RS31725 0.46 -0.5 465,802 - QEN71_RS31725 0.46 -0.5 465,802 - QEN71_RS31725 0.46 -0.0 465,802 - QEN71_RS31725 0.46 -0.5 465,803 + QEN71_RS31725 0.46 +0.2 466,307 + QEN71_RS31725 0.65 +0.2 466,496 + QEN71_RS31725 0.72 +0.6 466,594 - QEN71_RS31725 0.76 -0.1 466,648 - QEN71_RS31725 0.78 -1.5 466,648 - QEN71_RS31725 0.78 -1.7 466,694 - QEN71_RS31725 0.79 +0.7 466,769 + QEN71_RS31725 0.82 +0.2 466,770 - QEN71_RS31725 0.82 -1.0 466,770 - QEN71_RS31725 0.82 -1.1 466,770 - QEN71_RS31725 0.82 +1.0 466,890 + QEN71_RS31725 0.87 +0.7 466,890 + QEN71_RS31725 0.87 -0.4 466,890 + QEN71_RS31725 0.87 -0.0 466,890 + QEN71_RS31725 0.87 -1.6 466,891 - QEN71_RS31725 0.87 +0.0 466,891 - QEN71_RS31725 0.87 -1.5 467,075 + -0.3 467,075 + +0.5 467,076 - -2.2 467,076 - -0.5 467,163 - +1.6 467,163 - +0.1 467,226 + +0.1 467,227 - +0.2 467,227 - +1.2 467,271 + -1.4 467,271 + +0.2 467,272 - -1.2 467,272 - +0.3 467,272 - -0.0 467,290 - +1.8 467,542 + QEN71_RS31730 0.25 -0.4 467,542 + QEN71_RS31730 0.25 -0.2 467,543 - QEN71_RS31730 0.26 -1.0 467,652 + QEN71_RS31730 0.35 +1.6 467,748 + QEN71_RS31730 0.44 +0.3 467,749 - QEN71_RS31730 0.44 -2.8 467,845 + QEN71_RS31730 0.52 -1.2 467,845 + QEN71_RS31730 0.52 -0.7 467,845 + QEN71_RS31730 0.52 +1.5 467,846 - QEN71_RS31730 0.52 -0.4 467,846 - QEN71_RS31730 0.52 +0.5 467,962 + QEN71_RS31730 0.63 -1.0 467,974 + QEN71_RS31730 0.64 +0.1 467,974 + QEN71_RS31730 0.64 +0.5 467,975 - QEN71_RS31730 0.64 +0.7 468,016 - QEN71_RS31730 0.67 +0.2 468,016 - QEN71_RS31730 0.67 +1.3 468,024 + QEN71_RS31730 0.68 -1.5 468,025 - QEN71_RS31730 0.68 +1.4 468,025 - QEN71_RS31730 0.68 -0.8 468,129 + QEN71_RS31730 0.77 -0.8 468,129 + QEN71_RS31730 0.77 +1.0 468,129 + QEN71_RS31730 0.77 +0.2 468,129 + QEN71_RS31730 0.77 +2.9 468,129 + QEN71_RS31730 0.77 +1.3 468,129 + QEN71_RS31730 0.77 -1.3 468,129 + QEN71_RS31730 0.77 -0.3 468,130 - QEN71_RS31730 0.77 -0.8 468,130 - QEN71_RS31730 0.77 +1.0 468,130 - QEN71_RS31730 0.77 +0.7 468,130 - QEN71_RS31730 0.77 -0.1 468,138 + QEN71_RS31730 0.78 -0.0 468,138 + QEN71_RS31730 0.78 +1.2 468,139 - QEN71_RS31730 0.78 +0.2 468,139 - QEN71_RS31730 0.78 +0.9 468,139 - QEN71_RS31730 0.78 -0.2 468,228 + QEN71_RS31730 0.86 +0.2 468,229 - QEN71_RS31730 0.86 +1.0
Or see this region's nucleotide sequence