Experiment: Fumaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS31015 and QEN71_RS31020 are separated by 14 nucleotides QEN71_RS31020 and QEN71_RS31025 are separated by 19 nucleotides QEN71_RS31025 and QEN71_RS31030 are separated by 188 nucleotides
QEN71_RS31015: QEN71_RS31015 - ureidoglycolate lyase, at 306,128 to 306,973
_RS31015
QEN71_RS31020: QEN71_RS31020 - SDR family NAD(P)-dependent oxidoreductase, at 306,988 to 307,740
_RS31020
QEN71_RS31025: QEN71_RS31025 - LysR family transcriptional regulator, at 307,760 to 308,710
_RS31025
QEN71_RS31030: QEN71_RS31030 - IlvD/Edd family dehydratase, at 308,899 to 310,632
_RS31030
Position (kb) 307
308
309 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 306.896 kb on + strand at 306.971 kb on + strand at 307.456 kb on + strand, within QEN71_RS31020 at 307.456 kb on + strand, within QEN71_RS31020 at 307.456 kb on + strand, within QEN71_RS31020 at 307.457 kb on - strand, within QEN71_RS31020 at 307.594 kb on - strand, within QEN71_RS31020 at 307.594 kb on - strand, within QEN71_RS31020 at 307.600 kb on + strand, within QEN71_RS31020 at 307.601 kb on - strand, within QEN71_RS31020 at 307.735 kb on + strand at 307.736 kb on - strand at 307.777 kb on - strand at 307.924 kb on - strand, within QEN71_RS31025 at 307.924 kb on - strand, within QEN71_RS31025 at 307.927 kb on - strand, within QEN71_RS31025 at 308.380 kb on + strand, within QEN71_RS31025 at 308.381 kb on - strand, within QEN71_RS31025 at 308.381 kb on - strand, within QEN71_RS31025 at 308.381 kb on - strand, within QEN71_RS31025 at 308.688 kb on + strand at 308.688 kb on + strand at 308.689 kb on - strand at 308.720 kb on + strand at 308.721 kb on - strand at 308.726 kb on + strand at 308.770 kb on + strand at 308.770 kb on + strand at 308.771 kb on - strand at 308.771 kb on - strand at 308.831 kb on - strand at 308.894 kb on + strand at 308.894 kb on + strand at 308.894 kb on + strand at 308.894 kb on + strand at 308.895 kb on - strand at 308.968 kb on + strand at 308.969 kb on - strand at 308.969 kb on - strand at 309.043 kb on - strand at 309.043 kb on - strand at 309.043 kb on - strand at 309.043 kb on - strand at 309.043 kb on - strand at 309.112 kb on + strand, within QEN71_RS31030 at 309.113 kb on - strand, within QEN71_RS31030 at 309.113 kb on - strand, within QEN71_RS31030 at 309.589 kb on + strand, within QEN71_RS31030
Per-strain Table
Position Strand Gene LocusTag Fraction Fumaric (C) remove 306,896 + -0.1 306,971 + +0.4 307,456 + QEN71_RS31020 0.62 +0.0 307,456 + QEN71_RS31020 0.62 +1.1 307,456 + QEN71_RS31020 0.62 -1.1 307,457 - QEN71_RS31020 0.62 -1.1 307,594 - QEN71_RS31020 0.80 -1.4 307,594 - QEN71_RS31020 0.80 -0.8 307,600 + QEN71_RS31020 0.81 -0.1 307,601 - QEN71_RS31020 0.81 +1.0 307,735 + +0.3 307,736 - +1.5 307,777 - +0.5 307,924 - QEN71_RS31025 0.17 -3.2 307,924 - QEN71_RS31025 0.17 -0.7 307,927 - QEN71_RS31025 0.18 -0.9 308,380 + QEN71_RS31025 0.65 +0.7 308,381 - QEN71_RS31025 0.65 -0.2 308,381 - QEN71_RS31025 0.65 -0.6 308,381 - QEN71_RS31025 0.65 +0.4 308,688 + -2.5 308,688 + +0.2 308,689 - -0.2 308,720 + -1.3 308,721 - -0.0 308,726 + +1.3 308,770 + +0.0 308,770 + +1.1 308,771 - -1.9 308,771 - +0.2 308,831 - -1.0 308,894 + -0.6 308,894 + +0.8 308,894 + +0.3 308,894 + -0.7 308,895 - -0.5 308,968 + -0.4 308,969 - +0.3 308,969 - -0.6 309,043 - +0.4 309,043 - +1.6 309,043 - -0.4 309,043 - -0.1 309,043 - +0.4 309,112 + QEN71_RS31030 0.12 -0.6 309,113 - QEN71_RS31030 0.12 +0.8 309,113 - QEN71_RS31030 0.12 -0.6 309,589 + QEN71_RS31030 0.40 +0.4
Or see this region's nucleotide sequence