Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS29825

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS29820 and QEN71_RS29825 overlap by 23 nucleotidesQEN71_RS29825 and QEN71_RS29830 overlap by 4 nucleotidesQEN71_RS29830 and QEN71_RS29835 are separated by 7 nucleotides QEN71_RS29820: QEN71_RS29820 - sulfite dehydrogenase, at 30,913 to 32,190 _RS29820 QEN71_RS29825: QEN71_RS29825 - amino acid ABC transporter permease, at 32,168 to 32,908 _RS29825 QEN71_RS29830: QEN71_RS29830 - amino acid ABC transporter permease, at 32,905 to 33,636 _RS29830 QEN71_RS29835: QEN71_RS29835 - ABC transporter substrate-binding protein, at 33,644 to 34,462 _RS29835 Position (kb) 32 33Strain fitness (log2 ratio) -2 -1 0 1at 31.338 kb on - strand, within QEN71_RS29820at 31.410 kb on + strand, within QEN71_RS29820at 31.411 kb on - strand, within QEN71_RS29820at 31.487 kb on + strand, within QEN71_RS29820at 31.487 kb on + strand, within QEN71_RS29820at 31.877 kb on + strand, within QEN71_RS29820at 32.009 kb on + strand, within QEN71_RS29820at 32.010 kb on - strand, within QEN71_RS29820at 32.296 kb on - strand, within QEN71_RS29825at 32.331 kb on + strand, within QEN71_RS29825at 32.332 kb on - strand, within QEN71_RS29825at 32.395 kb on - strand, within QEN71_RS29825at 32.395 kb on - strand, within QEN71_RS29825at 32.395 kb on - strand, within QEN71_RS29825at 32.481 kb on + strand, within QEN71_RS29825at 32.481 kb on + strand, within QEN71_RS29825at 32.481 kb on + strand, within QEN71_RS29825at 32.580 kb on + strand, within QEN71_RS29825at 32.580 kb on + strand, within QEN71_RS29825at 32.874 kb on + strandat 32.991 kb on - strand, within QEN71_RS29830at 33.060 kb on - strand, within QEN71_RS29830at 33.119 kb on + strand, within QEN71_RS29830at 33.119 kb on + strand, within QEN71_RS29830at 33.120 kb on - strand, within QEN71_RS29830at 33.195 kb on + strand, within QEN71_RS29830at 33.221 kb on + strand, within QEN71_RS29830at 33.221 kb on + strand, within QEN71_RS29830at 33.284 kb on + strand, within QEN71_RS29830at 33.419 kb on + strand, within QEN71_RS29830at 33.453 kb on + strand, within QEN71_RS29830at 33.453 kb on + strand, within QEN71_RS29830at 33.470 kb on + strand, within QEN71_RS29830at 33.611 kb on + strandat 33.764 kb on - strand, within QEN71_RS29835

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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31,338 - QEN71_RS29820 0.33 -1.2
31,410 + QEN71_RS29820 0.39 +1.0
31,411 - QEN71_RS29820 0.39 +0.6
31,487 + QEN71_RS29820 0.45 +0.2
31,487 + QEN71_RS29820 0.45 +1.2
31,877 + QEN71_RS29820 0.75 +0.8
32,009 + QEN71_RS29820 0.86 -0.1
32,010 - QEN71_RS29820 0.86 +0.4
32,296 - QEN71_RS29825 0.17 -1.6
32,331 + QEN71_RS29825 0.22 -0.9
32,332 - QEN71_RS29825 0.22 -0.8
32,395 - QEN71_RS29825 0.31 +0.1
32,395 - QEN71_RS29825 0.31 +0.8
32,395 - QEN71_RS29825 0.31 -2.1
32,481 + QEN71_RS29825 0.42 +0.8
32,481 + QEN71_RS29825 0.42 -0.8
32,481 + QEN71_RS29825 0.42 -0.4
32,580 + QEN71_RS29825 0.56 -1.8
32,580 + QEN71_RS29825 0.56 +0.6
32,874 + -0.7
32,991 - QEN71_RS29830 0.12 +0.1
33,060 - QEN71_RS29830 0.21 +0.1
33,119 + QEN71_RS29830 0.29 +0.4
33,119 + QEN71_RS29830 0.29 +0.0
33,120 - QEN71_RS29830 0.29 -0.3
33,195 + QEN71_RS29830 0.40 +1.0
33,221 + QEN71_RS29830 0.43 +1.0
33,221 + QEN71_RS29830 0.43 -0.2
33,284 + QEN71_RS29830 0.52 +1.1
33,419 + QEN71_RS29830 0.70 +1.3
33,453 + QEN71_RS29830 0.75 +1.1
33,453 + QEN71_RS29830 0.75 -1.6
33,470 + QEN71_RS29830 0.77 -0.1
33,611 + -0.4
33,764 - QEN71_RS29835 0.15 +0.9

Or see this region's nucleotide sequence