Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS21810

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS21800 and QEN71_RS21805 are separated by 51 nucleotidesQEN71_RS21805 and QEN71_RS21810 are separated by 66 nucleotidesQEN71_RS21810 and QEN71_RS21815 are separated by 93 nucleotidesQEN71_RS21815 and QEN71_RS21820 overlap by 1 nucleotides QEN71_RS21800: QEN71_RS21800 - ankyrin repeat domain-containing protein, at 4,836,514 to 4,837,260 _RS21800 QEN71_RS21805: QEN71_RS21805 - TatD family hydrolase, at 4,837,312 to 4,838,103 _RS21805 QEN71_RS21810: QEN71_RS21810 - DNA polymerase III subunit delta', at 4,838,170 to 4,839,219 _RS21810 QEN71_RS21815: QEN71_RS21815 - dTMP kinase, at 4,839,313 to 4,839,933 _RS21815 QEN71_RS21820: QEN71_RS21820 - endolytic transglycosylase MltG, at 4,839,933 to 4,840,943 _RS21820 Position (kb) 4838 4839 4840Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4837.261 kb on - strandat 4837.295 kb on - strandat 4837.424 kb on + strand, within QEN71_RS21805at 4837.424 kb on + strand, within QEN71_RS21805at 4837.424 kb on + strand, within QEN71_RS21805at 4837.424 kb on + strand, within QEN71_RS21805at 4837.425 kb on - strand, within QEN71_RS21805at 4837.425 kb on - strand, within QEN71_RS21805at 4837.433 kb on + strand, within QEN71_RS21805at 4837.433 kb on + strand, within QEN71_RS21805at 4837.433 kb on + strand, within QEN71_RS21805at 4837.433 kb on + strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.434 kb on - strand, within QEN71_RS21805at 4837.479 kb on - strand, within QEN71_RS21805at 4837.479 kb on - strand, within QEN71_RS21805at 4837.583 kb on + strand, within QEN71_RS21805at 4837.583 kb on + strand, within QEN71_RS21805at 4837.583 kb on + strand, within QEN71_RS21805at 4837.584 kb on - strand, within QEN71_RS21805at 4837.584 kb on - strand, within QEN71_RS21805at 4837.584 kb on - strand, within QEN71_RS21805at 4837.584 kb on - strand, within QEN71_RS21805at 4837.710 kb on + strand, within QEN71_RS21805at 4837.710 kb on + strand, within QEN71_RS21805at 4837.711 kb on - strand, within QEN71_RS21805at 4837.711 kb on - strand, within QEN71_RS21805at 4837.711 kb on - strand, within QEN71_RS21805at 4837.711 kb on - strand, within QEN71_RS21805at 4837.752 kb on + strand, within QEN71_RS21805at 4837.753 kb on - strand, within QEN71_RS21805at 4837.786 kb on - strand, within QEN71_RS21805at 4837.814 kb on + strand, within QEN71_RS21805at 4837.814 kb on + strand, within QEN71_RS21805at 4837.814 kb on + strand, within QEN71_RS21805at 4837.817 kb on + strand, within QEN71_RS21805at 4837.817 kb on + strand, within QEN71_RS21805at 4837.817 kb on + strand, within QEN71_RS21805at 4837.817 kb on + strand, within QEN71_RS21805at 4837.817 kb on + strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.818 kb on - strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.934 kb on + strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.935 kb on - strand, within QEN71_RS21805at 4837.946 kb on + strand, within QEN71_RS21805at 4837.946 kb on + strand, within QEN71_RS21805at 4837.946 kb on + strand, within QEN71_RS21805at 4837.947 kb on - strand, within QEN71_RS21805at 4837.997 kb on - strand, within QEN71_RS21805at 4838.079 kb on + strandat 4838.079 kb on + strandat 4838.079 kb on + strandat 4838.079 kb on + strandat 4838.079 kb on + strandat 4838.079 kb on + strandat 4838.080 kb on - strandat 4838.080 kb on - strandat 4838.080 kb on - strandat 4838.171 kb on + strandat 4838.171 kb on + strandat 4839.322 kb on + strandat 4839.381 kb on + strand, within QEN71_RS21815at 4839.381 kb on + strand, within QEN71_RS21815at 4839.382 kb on - strand, within QEN71_RS21815at 4839.419 kb on + strand, within QEN71_RS21815at 4839.420 kb on - strand, within QEN71_RS21815at 4839.420 kb on - strand, within QEN71_RS21815at 4839.618 kb on - strand, within QEN71_RS21815at 4839.618 kb on - strand, within QEN71_RS21815at 4839.814 kb on - strand, within QEN71_RS21815at 4839.912 kb on + strandat 4839.912 kb on + strandat 4839.912 kb on + strandat 4839.913 kb on - strandat 4839.913 kb on - strandat 4839.913 kb on - strandat 4839.913 kb on - strandat 4839.949 kb on + strandat 4839.949 kb on + strandat 4839.949 kb on + strandat 4839.949 kb on + strandat 4839.949 kb on + strandat 4839.949 kb on + strandat 4839.949 kb on + strandat 4839.949 kb on + strandat 4839.949 kb on + strandat 4839.949 kb on + strandat 4839.949 kb on + strandat 4840.024 kb on + strandat 4840.025 kb on - strandat 4840.115 kb on + strand, within QEN71_RS21820at 4840.115 kb on + strand, within QEN71_RS21820at 4840.115 kb on + strand, within QEN71_RS21820at 4840.115 kb on + strand, within QEN71_RS21820at 4840.115 kb on + strand, within QEN71_RS21820at 4840.115 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.117 kb on + strand, within QEN71_RS21820at 4840.118 kb on - strand, within QEN71_RS21820at 4840.118 kb on - strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.121 kb on + strand, within QEN71_RS21820at 4840.126 kb on + strand, within QEN71_RS21820at 4840.126 kb on + strand, within QEN71_RS21820at 4840.126 kb on + strand, within QEN71_RS21820at 4840.126 kb on + strand, within QEN71_RS21820at 4840.126 kb on + strand, within QEN71_RS21820at 4840.171 kb on + strand, within QEN71_RS21820at 4840.171 kb on + strand, within QEN71_RS21820at 4840.171 kb on + strand, within QEN71_RS21820at 4840.171 kb on + strand, within QEN71_RS21820at 4840.171 kb on + strand, within QEN71_RS21820at 4840.172 kb on - strand, within QEN71_RS21820at 4840.172 kb on - strand, within QEN71_RS21820at 4840.189 kb on + strand, within QEN71_RS21820at 4840.189 kb on + strand, within QEN71_RS21820

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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4,837,261 - -0.5
4,837,295 - -0.2
4,837,424 + QEN71_RS21805 0.14 +0.3
4,837,424 + QEN71_RS21805 0.14 +0.2
4,837,424 + QEN71_RS21805 0.14 +0.3
4,837,424 + QEN71_RS21805 0.14 +1.2
4,837,425 - QEN71_RS21805 0.14 -0.9
4,837,425 - QEN71_RS21805 0.14 -1.7
4,837,433 + QEN71_RS21805 0.15 -1.2
4,837,433 + QEN71_RS21805 0.15 -0.4
4,837,433 + QEN71_RS21805 0.15 -0.1
4,837,433 + QEN71_RS21805 0.15 -0.7
4,837,434 - QEN71_RS21805 0.15 +0.4
4,837,434 - QEN71_RS21805 0.15 -0.2
4,837,434 - QEN71_RS21805 0.15 -0.9
4,837,434 - QEN71_RS21805 0.15 -0.1
4,837,434 - QEN71_RS21805 0.15 -1.2
4,837,434 - QEN71_RS21805 0.15 +0.3
4,837,434 - QEN71_RS21805 0.15 +0.3
4,837,434 - QEN71_RS21805 0.15 -0.7
4,837,434 - QEN71_RS21805 0.15 -0.0
4,837,434 - QEN71_RS21805 0.15 +0.1
4,837,434 - QEN71_RS21805 0.15 -0.8
4,837,434 - QEN71_RS21805 0.15 -0.4
4,837,479 - QEN71_RS21805 0.21 -0.2
4,837,479 - QEN71_RS21805 0.21 -0.1
4,837,583 + QEN71_RS21805 0.34 +1.0
4,837,583 + QEN71_RS21805 0.34 +0.7
4,837,583 + QEN71_RS21805 0.34 -0.7
4,837,584 - QEN71_RS21805 0.34 +0.5
4,837,584 - QEN71_RS21805 0.34 -0.9
4,837,584 - QEN71_RS21805 0.34 -1.1
4,837,584 - QEN71_RS21805 0.34 -0.6
4,837,710 + QEN71_RS21805 0.50 +0.3
4,837,710 + QEN71_RS21805 0.50 +0.4
4,837,711 - QEN71_RS21805 0.50 -0.1
4,837,711 - QEN71_RS21805 0.50 -0.6
4,837,711 - QEN71_RS21805 0.50 -1.3
4,837,711 - QEN71_RS21805 0.50 +0.3
4,837,752 + QEN71_RS21805 0.56 +0.7
4,837,753 - QEN71_RS21805 0.56 -0.3
4,837,786 - QEN71_RS21805 0.60 -0.5
4,837,814 + QEN71_RS21805 0.63 -0.8
4,837,814 + QEN71_RS21805 0.63 -0.3
4,837,814 + QEN71_RS21805 0.63 +0.9
4,837,817 + QEN71_RS21805 0.64 -2.7
4,837,817 + QEN71_RS21805 0.64 +0.4
4,837,817 + QEN71_RS21805 0.64 -0.0
4,837,817 + QEN71_RS21805 0.64 -1.2
4,837,817 + QEN71_RS21805 0.64 -0.3
4,837,818 - QEN71_RS21805 0.64 +1.0
4,837,818 - QEN71_RS21805 0.64 +0.6
4,837,818 - QEN71_RS21805 0.64 -0.2
4,837,818 - QEN71_RS21805 0.64 -0.3
4,837,818 - QEN71_RS21805 0.64 -1.0
4,837,818 - QEN71_RS21805 0.64 -0.3
4,837,934 + QEN71_RS21805 0.79 -0.2
4,837,934 + QEN71_RS21805 0.79 -1.9
4,837,934 + QEN71_RS21805 0.79 +1.7
4,837,934 + QEN71_RS21805 0.79 -1.1
4,837,934 + QEN71_RS21805 0.79 -0.3
4,837,934 + QEN71_RS21805 0.79 -1.0
4,837,934 + QEN71_RS21805 0.79 -0.1
4,837,934 + QEN71_RS21805 0.79 +0.6
4,837,934 + QEN71_RS21805 0.79 +0.1
4,837,934 + QEN71_RS21805 0.79 -0.5
4,837,934 + QEN71_RS21805 0.79 +0.4
4,837,934 + QEN71_RS21805 0.79 +0.3
4,837,934 + QEN71_RS21805 0.79 +0.8
4,837,935 - QEN71_RS21805 0.79 +0.8
4,837,935 - QEN71_RS21805 0.79 -0.9
4,837,935 - QEN71_RS21805 0.79 -0.8
4,837,935 - QEN71_RS21805 0.79 +1.1
4,837,935 - QEN71_RS21805 0.79 -0.3
4,837,935 - QEN71_RS21805 0.79 -1.2
4,837,935 - QEN71_RS21805 0.79 +0.1
4,837,935 - QEN71_RS21805 0.79 +0.3
4,837,935 - QEN71_RS21805 0.79 -1.8
4,837,946 + QEN71_RS21805 0.80 +0.3
4,837,946 + QEN71_RS21805 0.80 -0.0
4,837,946 + QEN71_RS21805 0.80 -0.2
4,837,947 - QEN71_RS21805 0.80 +1.0
4,837,997 - QEN71_RS21805 0.86 -1.8
4,838,079 + -0.4
4,838,079 + +0.1
4,838,079 + -0.1
4,838,079 + +1.0
4,838,079 + -0.3
4,838,079 + -0.0
4,838,080 - +1.5
4,838,080 - +0.9
4,838,080 - -1.6
4,838,171 + -0.4
4,838,171 + +0.1
4,839,322 + -1.2
4,839,381 + QEN71_RS21815 0.11 +1.3
4,839,381 + QEN71_RS21815 0.11 +0.8
4,839,382 - QEN71_RS21815 0.11 +0.3
4,839,419 + QEN71_RS21815 0.17 +0.3
4,839,420 - QEN71_RS21815 0.17 +1.1
4,839,420 - QEN71_RS21815 0.17 -0.0
4,839,618 - QEN71_RS21815 0.49 -1.5
4,839,618 - QEN71_RS21815 0.49 -0.2
4,839,814 - QEN71_RS21815 0.81 -0.0
4,839,912 + +0.3
4,839,912 + -0.6
4,839,912 + +0.8
4,839,913 - -1.7
4,839,913 - -0.1
4,839,913 - -0.5
4,839,913 - +0.8
4,839,949 + -0.6
4,839,949 + +0.5
4,839,949 + -0.6
4,839,949 + -0.1
4,839,949 + -0.9
4,839,949 + -0.6
4,839,949 + +1.2
4,839,949 + +0.7
4,839,949 + -1.3
4,839,949 + +0.9
4,839,949 + +0.3
4,840,024 + +0.3
4,840,025 - -0.8
4,840,115 + QEN71_RS21820 0.18 +1.4
4,840,115 + QEN71_RS21820 0.18 -1.5
4,840,115 + QEN71_RS21820 0.18 +0.5
4,840,115 + QEN71_RS21820 0.18 -0.4
4,840,115 + QEN71_RS21820 0.18 -0.6
4,840,115 + QEN71_RS21820 0.18 -0.6
4,840,117 + QEN71_RS21820 0.18 +3.0
4,840,117 + QEN71_RS21820 0.18 +0.5
4,840,117 + QEN71_RS21820 0.18 +0.3
4,840,117 + QEN71_RS21820 0.18 -0.4
4,840,117 + QEN71_RS21820 0.18 -0.0
4,840,117 + QEN71_RS21820 0.18 -0.0
4,840,117 + QEN71_RS21820 0.18 -0.3
4,840,117 + QEN71_RS21820 0.18 +0.4
4,840,117 + QEN71_RS21820 0.18 -0.1
4,840,117 + QEN71_RS21820 0.18 -1.0
4,840,117 + QEN71_RS21820 0.18 -0.9
4,840,117 + QEN71_RS21820 0.18 -0.3
4,840,117 + QEN71_RS21820 0.18 -0.0
4,840,117 + QEN71_RS21820 0.18 +1.3
4,840,117 + QEN71_RS21820 0.18 +0.6
4,840,118 - QEN71_RS21820 0.18 -0.6
4,840,118 - QEN71_RS21820 0.18 -1.0
4,840,121 + QEN71_RS21820 0.19 -0.8
4,840,121 + QEN71_RS21820 0.19 +0.3
4,840,121 + QEN71_RS21820 0.19 +0.9
4,840,121 + QEN71_RS21820 0.19 +0.8
4,840,121 + QEN71_RS21820 0.19 -0.8
4,840,121 + QEN71_RS21820 0.19 +0.1
4,840,121 + QEN71_RS21820 0.19 -0.0
4,840,121 + QEN71_RS21820 0.19 -0.0
4,840,121 + QEN71_RS21820 0.19 +0.4
4,840,121 + QEN71_RS21820 0.19 -0.0
4,840,121 + QEN71_RS21820 0.19 +0.2
4,840,121 + QEN71_RS21820 0.19 -0.5
4,840,121 + QEN71_RS21820 0.19 +1.8
4,840,126 + QEN71_RS21820 0.19 -1.0
4,840,126 + QEN71_RS21820 0.19 -1.8
4,840,126 + QEN71_RS21820 0.19 -1.8
4,840,126 + QEN71_RS21820 0.19 +0.4
4,840,126 + QEN71_RS21820 0.19 -1.1
4,840,171 + QEN71_RS21820 0.24 -0.2
4,840,171 + QEN71_RS21820 0.24 +1.1
4,840,171 + QEN71_RS21820 0.24 +0.7
4,840,171 + QEN71_RS21820 0.24 +0.2
4,840,171 + QEN71_RS21820 0.24 -0.2
4,840,172 - QEN71_RS21820 0.24 +0.4
4,840,172 - QEN71_RS21820 0.24 -0.6
4,840,189 + QEN71_RS21820 0.25 -0.6
4,840,189 + QEN71_RS21820 0.25 +1.2

Or see this region's nucleotide sequence