Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03230

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03220 and QEN71_RS03225 are separated by 190 nucleotidesQEN71_RS03225 and QEN71_RS03230 are separated by 98 nucleotidesQEN71_RS03230 and QEN71_RS03235 are separated by 134 nucleotidesQEN71_RS03235 and QEN71_RS03240 are separated by 171 nucleotides QEN71_RS03220: QEN71_RS03220 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 717,110 to 717,889 _RS03220 QEN71_RS03225: QEN71_RS03225 - tRNA-Gly, at 718,080 to 718,153 _RS03225 QEN71_RS03230: QEN71_RS03230 - YggT family protein, at 718,252 to 718,815 _RS03230 QEN71_RS03235: QEN71_RS03235 - EthD family reductase, at 718,950 to 719,270 _RS03235 QEN71_RS03240: QEN71_RS03240 - DUF2520 domain-containing protein, at 719,442 to 720,380 _RS03240 Position (kb) 718 719Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 717.279 kb on + strand, within QEN71_RS03220at 717.279 kb on + strand, within QEN71_RS03220at 717.279 kb on + strand, within QEN71_RS03220at 717.280 kb on - strand, within QEN71_RS03220at 717.280 kb on - strand, within QEN71_RS03220at 717.280 kb on - strand, within QEN71_RS03220at 717.280 kb on - strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.310 kb on - strand, within QEN71_RS03220at 717.310 kb on - strand, within QEN71_RS03220at 717.310 kb on - strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.413 kb on - strand, within QEN71_RS03220at 717.413 kb on - strand, within QEN71_RS03220at 717.413 kb on - strand, within QEN71_RS03220at 717.413 kb on - strand, within QEN71_RS03220at 717.455 kb on + strand, within QEN71_RS03220at 717.456 kb on - strand, within QEN71_RS03220at 717.684 kb on + strand, within QEN71_RS03220at 717.685 kb on - strand, within QEN71_RS03220at 717.696 kb on + strand, within QEN71_RS03220at 717.696 kb on + strand, within QEN71_RS03220at 717.697 kb on - strand, within QEN71_RS03220at 717.697 kb on - strand, within QEN71_RS03220at 717.974 kb on + strandat 717.974 kb on + strandat 717.974 kb on + strandat 717.975 kb on - strandat 717.975 kb on - strandat 717.975 kb on - strandat 717.976 kb on + strandat 717.977 kb on - strandat 717.977 kb on - strandat 717.977 kb on - strandat 717.988 kb on - strandat 717.988 kb on - strandat 718.046 kb on - strandat 718.046 kb on - strandat 718.113 kb on + strand, within QEN71_RS03225at 718.113 kb on + strand, within QEN71_RS03225at 718.113 kb on + strand, within QEN71_RS03225at 718.114 kb on - strand, within QEN71_RS03225at 718.114 kb on - strand, within QEN71_RS03225at 718.114 kb on - strand, within QEN71_RS03225at 718.114 kb on - strand, within QEN71_RS03225at 718.126 kb on + strand, within QEN71_RS03225at 718.126 kb on + strand, within QEN71_RS03225at 718.126 kb on + strand, within QEN71_RS03225at 718.127 kb on - strand, within QEN71_RS03225at 718.127 kb on - strand, within QEN71_RS03225at 718.127 kb on - strand, within QEN71_RS03225at 718.131 kb on + strand, within QEN71_RS03225at 718.131 kb on + strand, within QEN71_RS03225at 718.131 kb on + strand, within QEN71_RS03225at 718.131 kb on + strand, within QEN71_RS03225at 718.131 kb on + strand, within QEN71_RS03225at 718.132 kb on - strand, within QEN71_RS03225at 718.132 kb on - strand, within QEN71_RS03225at 718.132 kb on - strand, within QEN71_RS03225at 718.132 kb on - strand, within QEN71_RS03225at 718.132 kb on - strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.140 kb on + strand, within QEN71_RS03225at 718.141 kb on - strand, within QEN71_RS03225at 718.141 kb on - strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.250 kb on + strandat 718.250 kb on + strandat 718.250 kb on + strandat 718.250 kb on + strandat 718.251 kb on - strandat 718.406 kb on + strand, within QEN71_RS03230at 718.406 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.584 kb on - strand, within QEN71_RS03230at 718.584 kb on - strand, within QEN71_RS03230at 718.584 kb on - strand, within QEN71_RS03230at 718.584 kb on - strand, within QEN71_RS03230at 718.584 kb on - strand, within QEN71_RS03230at 718.639 kb on - strand, within QEN71_RS03230at 718.712 kb on + strand, within QEN71_RS03230at 718.712 kb on + strand, within QEN71_RS03230at 718.712 kb on + strand, within QEN71_RS03230at 718.712 kb on + strand, within QEN71_RS03230at 718.712 kb on + strand, within QEN71_RS03230at 718.713 kb on - strand, within QEN71_RS03230at 718.713 kb on - strand, within QEN71_RS03230at 718.713 kb on - strand, within QEN71_RS03230at 718.713 kb on - strand, within QEN71_RS03230at 718.782 kb on + strandat 718.782 kb on + strandat 718.782 kb on + strandat 718.782 kb on + strandat 718.783 kb on - strandat 719.005 kb on + strand, within QEN71_RS03235at 719.005 kb on + strand, within QEN71_RS03235at 719.005 kb on + strand, within QEN71_RS03235at 719.005 kb on + strand, within QEN71_RS03235at 719.006 kb on - strand, within QEN71_RS03235at 719.006 kb on - strand, within QEN71_RS03235at 719.006 kb on - strand, within QEN71_RS03235at 719.006 kb on - strand, within QEN71_RS03235at 719.056 kb on + strand, within QEN71_RS03235at 719.056 kb on + strand, within QEN71_RS03235at 719.056 kb on + strand, within QEN71_RS03235at 719.057 kb on - strand, within QEN71_RS03235at 719.209 kb on + strand, within QEN71_RS03235at 719.209 kb on + strand, within QEN71_RS03235at 719.209 kb on + strand, within QEN71_RS03235at 719.210 kb on - strand, within QEN71_RS03235at 719.210 kb on - strand, within QEN71_RS03235at 719.210 kb on - strand, within QEN71_RS03235at 719.210 kb on - strand, within QEN71_RS03235at 719.210 kb on - strand, within QEN71_RS03235at 719.210 kb on - strand, within QEN71_RS03235at 719.212 kb on + strand, within QEN71_RS03235at 719.212 kb on + strand, within QEN71_RS03235at 719.212 kb on + strand, within QEN71_RS03235at 719.212 kb on + strand, within QEN71_RS03235at 719.213 kb on - strand, within QEN71_RS03235at 719.213 kb on - strand, within QEN71_RS03235at 719.213 kb on - strand, within QEN71_RS03235at 719.213 kb on - strand, within QEN71_RS03235at 719.213 kb on - strand, within QEN71_RS03235at 719.213 kb on - strand, within QEN71_RS03235at 719.213 kb on - strand, within QEN71_RS03235at 719.213 kb on - strand, within QEN71_RS03235at 719.213 kb on - strand, within QEN71_RS03235at 719.397 kb on + strandat 719.398 kb on - strandat 719.433 kb on + strandat 719.433 kb on + strandat 719.433 kb on + strandat 719.433 kb on + strandat 719.434 kb on - strandat 719.434 kb on - strandat 719.434 kb on - strandat 719.434 kb on - strandat 719.434 kb on - strandat 719.434 kb on - strandat 719.443 kb on + strandat 719.444 kb on - strandat 719.444 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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717,279 + QEN71_RS03220 0.22 -2.0
717,279 + QEN71_RS03220 0.22 -0.8
717,279 + QEN71_RS03220 0.22 -0.7
717,280 - QEN71_RS03220 0.22 -1.4
717,280 - QEN71_RS03220 0.22 -0.9
717,280 - QEN71_RS03220 0.22 -0.6
717,280 - QEN71_RS03220 0.22 -0.9
717,309 + QEN71_RS03220 0.26 -0.7
717,309 + QEN71_RS03220 0.26 -0.1
717,309 + QEN71_RS03220 0.26 +0.3
717,309 + QEN71_RS03220 0.26 -0.5
717,309 + QEN71_RS03220 0.26 -0.2
717,309 + QEN71_RS03220 0.26 +1.0
717,309 + QEN71_RS03220 0.26 -0.9
717,309 + QEN71_RS03220 0.26 +0.3
717,310 - QEN71_RS03220 0.26 -0.3
717,310 - QEN71_RS03220 0.26 -1.2
717,310 - QEN71_RS03220 0.26 -0.7
717,412 + QEN71_RS03220 0.39 +0.2
717,412 + QEN71_RS03220 0.39 -1.8
717,412 + QEN71_RS03220 0.39 -1.0
717,412 + QEN71_RS03220 0.39 -2.0
717,412 + QEN71_RS03220 0.39 -0.3
717,412 + QEN71_RS03220 0.39 -0.2
717,412 + QEN71_RS03220 0.39 -0.2
717,413 - QEN71_RS03220 0.39 +0.1
717,413 - QEN71_RS03220 0.39 -1.5
717,413 - QEN71_RS03220 0.39 -0.2
717,413 - QEN71_RS03220 0.39 -0.8
717,455 + QEN71_RS03220 0.44 +0.2
717,456 - QEN71_RS03220 0.44 -0.9
717,684 + QEN71_RS03220 0.74 -0.7
717,685 - QEN71_RS03220 0.74 -0.1
717,696 + QEN71_RS03220 0.75 +1.1
717,696 + QEN71_RS03220 0.75 +0.6
717,697 - QEN71_RS03220 0.75 +0.4
717,697 - QEN71_RS03220 0.75 +1.3
717,974 + -0.3
717,974 + -0.5
717,974 + -1.5
717,975 - +0.0
717,975 - +0.2
717,975 - -0.5
717,976 + -0.9
717,977 - +1.4
717,977 - +0.8
717,977 - -0.0
717,988 - -0.4
717,988 - +0.3
718,046 - +0.1
718,046 - -0.9
718,113 + QEN71_RS03225 0.45 -0.5
718,113 + QEN71_RS03225 0.45 -0.7
718,113 + QEN71_RS03225 0.45 -0.1
718,114 - QEN71_RS03225 0.46 -0.1
718,114 - QEN71_RS03225 0.46 -0.3
718,114 - QEN71_RS03225 0.46 +1.1
718,114 - QEN71_RS03225 0.46 +0.7
718,126 + QEN71_RS03225 0.62 -1.3
718,126 + QEN71_RS03225 0.62 +0.7
718,126 + QEN71_RS03225 0.62 +0.3
718,127 - QEN71_RS03225 0.64 -0.2
718,127 - QEN71_RS03225 0.64 +0.1
718,127 - QEN71_RS03225 0.64 +0.4
718,131 + QEN71_RS03225 0.69 -2.1
718,131 + QEN71_RS03225 0.69 -1.4
718,131 + QEN71_RS03225 0.69 -0.5
718,131 + QEN71_RS03225 0.69 -0.2
718,131 + QEN71_RS03225 0.69 +0.1
718,132 - QEN71_RS03225 0.70 +0.7
718,132 - QEN71_RS03225 0.70 +0.2
718,132 - QEN71_RS03225 0.70 -0.1
718,132 - QEN71_RS03225 0.70 +1.4
718,132 - QEN71_RS03225 0.70 -0.5
718,134 + QEN71_RS03225 0.73 -0.1
718,134 + QEN71_RS03225 0.73 +0.4
718,134 + QEN71_RS03225 0.73 +2.9
718,134 + QEN71_RS03225 0.73 -1.1
718,134 + QEN71_RS03225 0.73 -0.6
718,134 + QEN71_RS03225 0.73 +1.1
718,134 + QEN71_RS03225 0.73 -1.7
718,134 + QEN71_RS03225 0.73 +0.5
718,135 - QEN71_RS03225 0.74 +0.1
718,135 - QEN71_RS03225 0.74 -1.4
718,135 - QEN71_RS03225 0.74 +0.1
718,135 - QEN71_RS03225 0.74 -0.7
718,135 - QEN71_RS03225 0.74 +1.2
718,135 - QEN71_RS03225 0.74 +0.8
718,135 - QEN71_RS03225 0.74 +2.3
718,140 + QEN71_RS03225 0.81 -0.5
718,141 - QEN71_RS03225 0.82 -0.3
718,141 - QEN71_RS03225 0.82 -0.0
718,142 + QEN71_RS03225 0.84 -0.4
718,142 + QEN71_RS03225 0.84 +0.2
718,142 + QEN71_RS03225 0.84 -0.3
718,142 + QEN71_RS03225 0.84 -0.0
718,142 + QEN71_RS03225 0.84 +0.1
718,142 + QEN71_RS03225 0.84 -0.9
718,142 + QEN71_RS03225 0.84 -0.7
718,142 + QEN71_RS03225 0.84 -0.7
718,142 + QEN71_RS03225 0.84 -1.9
718,142 + QEN71_RS03225 0.84 +0.5
718,142 + QEN71_RS03225 0.84 -0.9
718,143 - QEN71_RS03225 0.85 -0.5
718,143 - QEN71_RS03225 0.85 -1.1
718,143 - QEN71_RS03225 0.85 +1.4
718,143 - QEN71_RS03225 0.85 -0.2
718,143 - QEN71_RS03225 0.85 +0.6
718,143 - QEN71_RS03225 0.85 +0.3
718,143 - QEN71_RS03225 0.85 +0.2
718,143 - QEN71_RS03225 0.85 +1.1
718,143 - QEN71_RS03225 0.85 -0.5
718,250 + +0.1
718,250 + +0.9
718,250 + -0.4
718,250 + -0.0
718,251 - +0.1
718,406 + QEN71_RS03230 0.27 +0.1
718,406 + QEN71_RS03230 0.27 -0.1
718,583 + QEN71_RS03230 0.59 -2.0
718,583 + QEN71_RS03230 0.59 +0.1
718,583 + QEN71_RS03230 0.59 -1.8
718,583 + QEN71_RS03230 0.59 -0.4
718,583 + QEN71_RS03230 0.59 -3.1
718,583 + QEN71_RS03230 0.59 +0.1
718,583 + QEN71_RS03230 0.59 -2.1
718,584 - QEN71_RS03230 0.59 -1.1
718,584 - QEN71_RS03230 0.59 -1.4
718,584 - QEN71_RS03230 0.59 +0.1
718,584 - QEN71_RS03230 0.59 -2.2
718,584 - QEN71_RS03230 0.59 +1.1
718,639 - QEN71_RS03230 0.69 -0.5
718,712 + QEN71_RS03230 0.82 -1.1
718,712 + QEN71_RS03230 0.82 -0.7
718,712 + QEN71_RS03230 0.82 -1.2
718,712 + QEN71_RS03230 0.82 -0.4
718,712 + QEN71_RS03230 0.82 -0.7
718,713 - QEN71_RS03230 0.82 -0.3
718,713 - QEN71_RS03230 0.82 +1.3
718,713 - QEN71_RS03230 0.82 -0.9
718,713 - QEN71_RS03230 0.82 -1.5
718,782 + -2.6
718,782 + +0.6
718,782 + -0.3
718,782 + -0.6
718,783 - -3.2
719,005 + QEN71_RS03235 0.17 -1.5
719,005 + QEN71_RS03235 0.17 -2.0
719,005 + QEN71_RS03235 0.17 -0.7
719,005 + QEN71_RS03235 0.17 -2.0
719,006 - QEN71_RS03235 0.17 -0.3
719,006 - QEN71_RS03235 0.17 -0.9
719,006 - QEN71_RS03235 0.17 -0.4
719,006 - QEN71_RS03235 0.17 +0.1
719,056 + QEN71_RS03235 0.33 -0.1
719,056 + QEN71_RS03235 0.33 -0.6
719,056 + QEN71_RS03235 0.33 -0.7
719,057 - QEN71_RS03235 0.33 -0.6
719,209 + QEN71_RS03235 0.81 +0.2
719,209 + QEN71_RS03235 0.81 -0.5
719,209 + QEN71_RS03235 0.81 -1.2
719,210 - QEN71_RS03235 0.81 +0.3
719,210 - QEN71_RS03235 0.81 -0.6
719,210 - QEN71_RS03235 0.81 -1.0
719,210 - QEN71_RS03235 0.81 -0.4
719,210 - QEN71_RS03235 0.81 +1.2
719,210 - QEN71_RS03235 0.81 +1.8
719,212 + QEN71_RS03235 0.82 -0.3
719,212 + QEN71_RS03235 0.82 +1.8
719,212 + QEN71_RS03235 0.82 +0.6
719,212 + QEN71_RS03235 0.82 -0.7
719,213 - QEN71_RS03235 0.82 -0.1
719,213 - QEN71_RS03235 0.82 -0.2
719,213 - QEN71_RS03235 0.82 -1.0
719,213 - QEN71_RS03235 0.82 -0.0
719,213 - QEN71_RS03235 0.82 -0.1
719,213 - QEN71_RS03235 0.82 +1.1
719,213 - QEN71_RS03235 0.82 -0.5
719,213 - QEN71_RS03235 0.82 -0.4
719,213 - QEN71_RS03235 0.82 +0.2
719,397 + +0.8
719,398 - -0.5
719,433 + -0.7
719,433 + +0.5
719,433 + +0.7
719,433 + -0.2
719,434 - -1.1
719,434 - +1.5
719,434 - -0.5
719,434 - +0.1
719,434 - -1.5
719,434 - -0.1
719,443 + -0.5
719,444 - -0.4
719,444 - -0.0

Or see this region's nucleotide sequence