Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00945

Experiment: Fumaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00940 and QEN71_RS00945 are separated by 600 nucleotidesQEN71_RS00945 and QEN71_RS00950 are separated by 741 nucleotides QEN71_RS00940: QEN71_RS00940 - copper homeostasis protein CutC, at 212,227 to 212,916 _RS00940 QEN71_RS00945: QEN71_RS00945 - indolepyruvate ferredoxin oxidoreductase family protein, at 213,517 to 217,110 _RS00945 QEN71_RS00950: QEN71_RS00950 - IS481 family transposase, at 217,852 to 218,991 _RS00950 Position (kb) 213 214 215 216 217 218Strain fitness (log2 ratio) -2 -1 0 1 2at 212.592 kb on + strand, within QEN71_RS00940at 212.592 kb on + strand, within QEN71_RS00940at 212.592 kb on + strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.593 kb on - strand, within QEN71_RS00940at 212.668 kb on - strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.670 kb on + strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.671 kb on - strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.760 kb on + strand, within QEN71_RS00940at 212.761 kb on - strand, within QEN71_RS00940at 212.817 kb on + strand, within QEN71_RS00940at 212.817 kb on + strand, within QEN71_RS00940at 212.856 kb on + strandat 212.856 kb on + strandat 212.856 kb on + strandat 212.915 kb on - strandat 212.915 kb on - strandat 212.973 kb on - strandat 213.237 kb on + strandat 213.237 kb on + strandat 213.237 kb on + strandat 213.296 kb on + strandat 213.296 kb on + strandat 213.323 kb on - strandat 213.530 kb on - strandat 213.564 kb on + strandat 213.565 kb on - strandat 213.565 kb on - strandat 213.565 kb on - strandat 213.649 kb on - strandat 213.649 kb on - strandat 213.663 kb on + strandat 213.736 kb on - strandat 213.768 kb on + strandat 213.768 kb on + strandat 213.768 kb on + strandat 213.769 kb on - strandat 213.769 kb on - strandat 214.039 kb on - strand, within QEN71_RS00945at 214.058 kb on + strand, within QEN71_RS00945at 214.058 kb on + strand, within QEN71_RS00945at 214.058 kb on + strand, within QEN71_RS00945at 214.059 kb on - strand, within QEN71_RS00945at 214.059 kb on - strand, within QEN71_RS00945at 214.085 kb on + strand, within QEN71_RS00945at 214.085 kb on + strand, within QEN71_RS00945at 214.181 kb on + strand, within QEN71_RS00945at 214.193 kb on + strand, within QEN71_RS00945at 214.193 kb on + strand, within QEN71_RS00945at 214.193 kb on + strand, within QEN71_RS00945at 214.194 kb on - strand, within QEN71_RS00945at 214.194 kb on - strand, within QEN71_RS00945at 214.194 kb on - strand, within QEN71_RS00945at 214.208 kb on + strand, within QEN71_RS00945at 214.208 kb on + strand, within QEN71_RS00945at 214.298 kb on - strand, within QEN71_RS00945at 214.298 kb on - strand, within QEN71_RS00945at 214.442 kb on + strand, within QEN71_RS00945at 214.443 kb on - strand, within QEN71_RS00945at 214.458 kb on + strand, within QEN71_RS00945at 214.919 kb on + strand, within QEN71_RS00945at 214.920 kb on - strand, within QEN71_RS00945at 214.920 kb on - strand, within QEN71_RS00945at 214.920 kb on - strand, within QEN71_RS00945at 214.920 kb on - strand, within QEN71_RS00945at 214.920 kb on - strand, within QEN71_RS00945at 215.069 kb on + strand, within QEN71_RS00945at 215.069 kb on + strand, within QEN71_RS00945at 215.069 kb on + strand, within QEN71_RS00945at 215.069 kb on + strand, within QEN71_RS00945at 215.069 kb on + strand, within QEN71_RS00945at 215.070 kb on - strand, within QEN71_RS00945at 215.070 kb on - strand, within QEN71_RS00945at 215.070 kb on - strand, within QEN71_RS00945at 215.070 kb on - strand, within QEN71_RS00945at 215.070 kb on - strand, within QEN71_RS00945at 215.273 kb on + strand, within QEN71_RS00945at 215.273 kb on + strand, within QEN71_RS00945at 215.273 kb on + strand, within QEN71_RS00945at 215.273 kb on + strand, within QEN71_RS00945at 215.273 kb on + strand, within QEN71_RS00945at 215.273 kb on + strand, within QEN71_RS00945at 215.273 kb on + strand, within QEN71_RS00945at 215.273 kb on + strand, within QEN71_RS00945at 215.274 kb on - strand, within QEN71_RS00945at 215.274 kb on - strand, within QEN71_RS00945at 215.274 kb on - strand, within QEN71_RS00945at 215.274 kb on - strand, within QEN71_RS00945at 215.385 kb on - strand, within QEN71_RS00945at 215.513 kb on + strand, within QEN71_RS00945at 215.514 kb on - strand, within QEN71_RS00945at 215.525 kb on + strand, within QEN71_RS00945at 215.525 kb on + strand, within QEN71_RS00945at 215.525 kb on + strand, within QEN71_RS00945at 215.526 kb on - strand, within QEN71_RS00945at 215.526 kb on - strand, within QEN71_RS00945at 215.526 kb on - strand, within QEN71_RS00945at 215.526 kb on - strand, within QEN71_RS00945at 215.585 kb on + strand, within QEN71_RS00945at 215.585 kb on + strand, within QEN71_RS00945at 215.585 kb on + strand, within QEN71_RS00945at 215.585 kb on + strand, within QEN71_RS00945at 215.585 kb on + strand, within QEN71_RS00945at 215.585 kb on + strand, within QEN71_RS00945at 215.586 kb on - strand, within QEN71_RS00945at 215.586 kb on - strand, within QEN71_RS00945at 215.586 kb on - strand, within QEN71_RS00945at 215.586 kb on - strand, within QEN71_RS00945at 215.586 kb on - strand, within QEN71_RS00945at 215.586 kb on - strand, within QEN71_RS00945at 215.586 kb on - strand, within QEN71_RS00945at 215.586 kb on - strand, within QEN71_RS00945at 215.586 kb on - strand, within QEN71_RS00945at 215.795 kb on + strand, within QEN71_RS00945at 215.796 kb on - strand, within QEN71_RS00945at 215.796 kb on - strand, within QEN71_RS00945at 215.978 kb on + strand, within QEN71_RS00945at 215.979 kb on - strand, within QEN71_RS00945at 216.020 kb on + strand, within QEN71_RS00945at 216.020 kb on + strand, within QEN71_RS00945at 216.020 kb on + strand, within QEN71_RS00945at 216.021 kb on - strand, within QEN71_RS00945at 216.021 kb on - strand, within QEN71_RS00945at 216.021 kb on - strand, within QEN71_RS00945at 216.021 kb on - strand, within QEN71_RS00945at 216.026 kb on + strand, within QEN71_RS00945at 216.026 kb on + strand, within QEN71_RS00945at 216.026 kb on + strand, within QEN71_RS00945at 216.026 kb on + strand, within QEN71_RS00945at 216.026 kb on + strand, within QEN71_RS00945at 216.026 kb on + strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.027 kb on - strand, within QEN71_RS00945at 216.108 kb on + strand, within QEN71_RS00945at 216.108 kb on + strand, within QEN71_RS00945at 216.108 kb on + strand, within QEN71_RS00945at 216.146 kb on + strand, within QEN71_RS00945at 216.146 kb on + strand, within QEN71_RS00945at 216.146 kb on + strand, within QEN71_RS00945at 216.146 kb on + strand, within QEN71_RS00945at 216.147 kb on - strand, within QEN71_RS00945at 216.147 kb on - strand, within QEN71_RS00945at 216.147 kb on - strand, within QEN71_RS00945at 216.147 kb on - strand, within QEN71_RS00945at 216.486 kb on - strand, within QEN71_RS00945at 216.507 kb on - strand, within QEN71_RS00945at 216.507 kb on - strand, within QEN71_RS00945at 216.507 kb on - strand, within QEN71_RS00945at 216.527 kb on + strand, within QEN71_RS00945at 216.527 kb on + strand, within QEN71_RS00945at 216.527 kb on + strand, within QEN71_RS00945at 216.527 kb on + strand, within QEN71_RS00945at 216.527 kb on + strand, within QEN71_RS00945at 216.528 kb on - strand, within QEN71_RS00945at 216.528 kb on - strand, within QEN71_RS00945at 216.528 kb on - strand, within QEN71_RS00945at 216.528 kb on - strand, within QEN71_RS00945at 216.528 kb on - strand, within QEN71_RS00945at 216.528 kb on - strand, within QEN71_RS00945at 216.528 kb on - strand, within QEN71_RS00945at 216.686 kb on + strand, within QEN71_RS00945at 216.686 kb on + strand, within QEN71_RS00945at 216.686 kb on + strand, within QEN71_RS00945at 216.687 kb on - strand, within QEN71_RS00945at 216.743 kb on + strand, within QEN71_RS00945at 216.743 kb on + strand, within QEN71_RS00945at 216.756 kb on - strandat 216.868 kb on + strandat 216.868 kb on + strandat 216.869 kb on - strandat 216.869 kb on - strandat 217.096 kb on + strandat 217.221 kb on + strandat 217.221 kb on + strandat 217.221 kb on + strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.222 kb on - strandat 217.233 kb on - strandat 217.233 kb on - strandat 217.599 kb on - strandat 217.683 kb on + strandat 217.683 kb on + strandat 217.683 kb on + strandat 217.683 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumaric (C)
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212,592 + QEN71_RS00940 0.53 +1.3
212,592 + QEN71_RS00940 0.53 +0.6
212,592 + QEN71_RS00940 0.53 +1.7
212,593 - QEN71_RS00940 0.53 -0.9
212,593 - QEN71_RS00940 0.53 +0.2
212,593 - QEN71_RS00940 0.53 -0.9
212,593 - QEN71_RS00940 0.53 +0.6
212,668 - QEN71_RS00940 0.64 +0.1
212,670 + QEN71_RS00940 0.64 +0.8
212,670 + QEN71_RS00940 0.64 -0.5
212,670 + QEN71_RS00940 0.64 +0.6
212,670 + QEN71_RS00940 0.64 +0.1
212,670 + QEN71_RS00940 0.64 -0.3
212,670 + QEN71_RS00940 0.64 +0.3
212,670 + QEN71_RS00940 0.64 -0.4
212,671 - QEN71_RS00940 0.64 -0.5
212,671 - QEN71_RS00940 0.64 -0.4
212,671 - QEN71_RS00940 0.64 +2.6
212,671 - QEN71_RS00940 0.64 -0.2
212,760 + QEN71_RS00940 0.77 +0.6
212,760 + QEN71_RS00940 0.77 -0.1
212,760 + QEN71_RS00940 0.77 +0.3
212,760 + QEN71_RS00940 0.77 -0.2
212,760 + QEN71_RS00940 0.77 +0.5
212,761 - QEN71_RS00940 0.77 +0.0
212,817 + QEN71_RS00940 0.86 +1.1
212,817 + QEN71_RS00940 0.86 -0.1
212,856 + -1.1
212,856 + +0.3
212,856 + -1.2
212,915 - -1.5
212,915 - +0.1
212,973 - -0.1
213,237 + +0.9
213,237 + +1.1
213,237 + -0.2
213,296 + +0.2
213,296 + -0.7
213,323 - +0.2
213,530 - -0.2
213,564 + -0.3
213,565 - -0.5
213,565 - -0.4
213,565 - +0.8
213,649 - +0.3
213,649 - -0.1
213,663 + -0.4
213,736 - -0.1
213,768 + +0.0
213,768 + -1.7
213,768 + +0.3
213,769 - -0.8
213,769 - +0.1
214,039 - QEN71_RS00945 0.15 +1.7
214,058 + QEN71_RS00945 0.15 +0.5
214,058 + QEN71_RS00945 0.15 -0.3
214,058 + QEN71_RS00945 0.15 +0.2
214,059 - QEN71_RS00945 0.15 +1.5
214,059 - QEN71_RS00945 0.15 +0.6
214,085 + QEN71_RS00945 0.16 -0.7
214,085 + QEN71_RS00945 0.16 -0.1
214,181 + QEN71_RS00945 0.18 -0.9
214,193 + QEN71_RS00945 0.19 -0.2
214,193 + QEN71_RS00945 0.19 -0.2
214,193 + QEN71_RS00945 0.19 -0.4
214,194 - QEN71_RS00945 0.19 -0.3
214,194 - QEN71_RS00945 0.19 +0.1
214,194 - QEN71_RS00945 0.19 -0.5
214,208 + QEN71_RS00945 0.19 +0.1
214,208 + QEN71_RS00945 0.19 +0.4
214,298 - QEN71_RS00945 0.22 -0.9
214,298 - QEN71_RS00945 0.22 -0.2
214,442 + QEN71_RS00945 0.26 -0.1
214,443 - QEN71_RS00945 0.26 +1.6
214,458 + QEN71_RS00945 0.26 -0.2
214,919 + QEN71_RS00945 0.39 +0.2
214,920 - QEN71_RS00945 0.39 -0.6
214,920 - QEN71_RS00945 0.39 +0.0
214,920 - QEN71_RS00945 0.39 +0.1
214,920 - QEN71_RS00945 0.39 +0.2
214,920 - QEN71_RS00945 0.39 -0.4
215,069 + QEN71_RS00945 0.43 -1.0
215,069 + QEN71_RS00945 0.43 -0.7
215,069 + QEN71_RS00945 0.43 +0.5
215,069 + QEN71_RS00945 0.43 -1.1
215,069 + QEN71_RS00945 0.43 -0.7
215,070 - QEN71_RS00945 0.43 -1.1
215,070 - QEN71_RS00945 0.43 +0.3
215,070 - QEN71_RS00945 0.43 -0.2
215,070 - QEN71_RS00945 0.43 +0.9
215,070 - QEN71_RS00945 0.43 -0.8
215,273 + QEN71_RS00945 0.49 -0.6
215,273 + QEN71_RS00945 0.49 +0.2
215,273 + QEN71_RS00945 0.49 -0.4
215,273 + QEN71_RS00945 0.49 -0.8
215,273 + QEN71_RS00945 0.49 -0.6
215,273 + QEN71_RS00945 0.49 +0.1
215,273 + QEN71_RS00945 0.49 -0.4
215,273 + QEN71_RS00945 0.49 -0.5
215,274 - QEN71_RS00945 0.49 +0.1
215,274 - QEN71_RS00945 0.49 -0.2
215,274 - QEN71_RS00945 0.49 +0.4
215,274 - QEN71_RS00945 0.49 -0.4
215,385 - QEN71_RS00945 0.52 -0.1
215,513 + QEN71_RS00945 0.56 -0.2
215,514 - QEN71_RS00945 0.56 +0.0
215,525 + QEN71_RS00945 0.56 +0.2
215,525 + QEN71_RS00945 0.56 -0.2
215,525 + QEN71_RS00945 0.56 +0.7
215,526 - QEN71_RS00945 0.56 +0.5
215,526 - QEN71_RS00945 0.56 +0.8
215,526 - QEN71_RS00945 0.56 +0.3
215,526 - QEN71_RS00945 0.56 +0.2
215,585 + QEN71_RS00945 0.58 +0.0
215,585 + QEN71_RS00945 0.58 +0.0
215,585 + QEN71_RS00945 0.58 +0.5
215,585 + QEN71_RS00945 0.58 +0.3
215,585 + QEN71_RS00945 0.58 -0.2
215,585 + QEN71_RS00945 0.58 -0.1
215,586 - QEN71_RS00945 0.58 -0.0
215,586 - QEN71_RS00945 0.58 +0.2
215,586 - QEN71_RS00945 0.58 +0.2
215,586 - QEN71_RS00945 0.58 +0.4
215,586 - QEN71_RS00945 0.58 +0.6
215,586 - QEN71_RS00945 0.58 +0.0
215,586 - QEN71_RS00945 0.58 -0.4
215,586 - QEN71_RS00945 0.58 -0.3
215,586 - QEN71_RS00945 0.58 +0.1
215,795 + QEN71_RS00945 0.63 +1.1
215,796 - QEN71_RS00945 0.63 -0.0
215,796 - QEN71_RS00945 0.63 +0.9
215,978 + QEN71_RS00945 0.68 -0.6
215,979 - QEN71_RS00945 0.69 +0.2
216,020 + QEN71_RS00945 0.70 -0.4
216,020 + QEN71_RS00945 0.70 +0.8
216,020 + QEN71_RS00945 0.70 +0.1
216,021 - QEN71_RS00945 0.70 +0.8
216,021 - QEN71_RS00945 0.70 +1.4
216,021 - QEN71_RS00945 0.70 -1.0
216,021 - QEN71_RS00945 0.70 -0.0
216,026 + QEN71_RS00945 0.70 -1.2
216,026 + QEN71_RS00945 0.70 -0.2
216,026 + QEN71_RS00945 0.70 +0.5
216,026 + QEN71_RS00945 0.70 -0.5
216,026 + QEN71_RS00945 0.70 -0.2
216,026 + QEN71_RS00945 0.70 -1.5
216,027 - QEN71_RS00945 0.70 +0.0
216,027 - QEN71_RS00945 0.70 -0.7
216,027 - QEN71_RS00945 0.70 -1.0
216,027 - QEN71_RS00945 0.70 -1.2
216,027 - QEN71_RS00945 0.70 -0.2
216,027 - QEN71_RS00945 0.70 +0.9
216,027 - QEN71_RS00945 0.70 +0.2
216,027 - QEN71_RS00945 0.70 -0.4
216,027 - QEN71_RS00945 0.70 -0.8
216,027 - QEN71_RS00945 0.70 -0.1
216,027 - QEN71_RS00945 0.70 +0.1
216,027 - QEN71_RS00945 0.70 -1.1
216,027 - QEN71_RS00945 0.70 -1.2
216,027 - QEN71_RS00945 0.70 +0.1
216,027 - QEN71_RS00945 0.70 -0.8
216,108 + QEN71_RS00945 0.72 +0.2
216,108 + QEN71_RS00945 0.72 +1.0
216,108 + QEN71_RS00945 0.72 -1.4
216,146 + QEN71_RS00945 0.73 +0.0
216,146 + QEN71_RS00945 0.73 -0.4
216,146 + QEN71_RS00945 0.73 +0.1
216,146 + QEN71_RS00945 0.73 +0.2
216,147 - QEN71_RS00945 0.73 +0.5
216,147 - QEN71_RS00945 0.73 -0.9
216,147 - QEN71_RS00945 0.73 +0.6
216,147 - QEN71_RS00945 0.73 -0.8
216,486 - QEN71_RS00945 0.83 -0.3
216,507 - QEN71_RS00945 0.83 +0.0
216,507 - QEN71_RS00945 0.83 +0.4
216,507 - QEN71_RS00945 0.83 -0.3
216,527 + QEN71_RS00945 0.84 +0.6
216,527 + QEN71_RS00945 0.84 -0.2
216,527 + QEN71_RS00945 0.84 -1.0
216,527 + QEN71_RS00945 0.84 -0.4
216,527 + QEN71_RS00945 0.84 -0.1
216,528 - QEN71_RS00945 0.84 +0.9
216,528 - QEN71_RS00945 0.84 +0.0
216,528 - QEN71_RS00945 0.84 -1.8
216,528 - QEN71_RS00945 0.84 -0.1
216,528 - QEN71_RS00945 0.84 +0.8
216,528 - QEN71_RS00945 0.84 -0.2
216,528 - QEN71_RS00945 0.84 -0.7
216,686 + QEN71_RS00945 0.88 -0.7
216,686 + QEN71_RS00945 0.88 -0.4
216,686 + QEN71_RS00945 0.88 -0.7
216,687 - QEN71_RS00945 0.88 +1.1
216,743 + QEN71_RS00945 0.90 +0.7
216,743 + QEN71_RS00945 0.90 -0.0
216,756 - -0.1
216,868 + +0.2
216,868 + -1.2
216,869 - +0.4
216,869 - -1.3
217,096 + -0.5
217,221 + +0.1
217,221 + -0.2
217,221 + -0.5
217,222 - -0.2
217,222 - +1.7
217,222 - +0.6
217,222 - +0.1
217,233 - +0.1
217,233 - +0.2
217,599 - -0.5
217,683 + +0.3
217,683 + -1.4
217,683 + +1.5
217,683 + -1.0

Or see this region's nucleotide sequence