Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02482

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2
2,768,377	+		MIT1002_02480	0.83	-1.7
2,768,384	+		MIT1002_02480	0.86	+0.6
2,768,394	+				+0.2
2,768,406	+				+0.1
2,768,406	+				+1.2
2,768,468	+				-0.6
2,768,476	-				+0.5
2,768,540	+				-0.8
2,768,555	-				-0.5
2,768,560	-				-0.3
2,768,580	-				+0.6
2,768,594	+				-0.3
2,768,602	-				+0.9
2,768,602	-				+1.1
2,768,609	+				+0.4
2,768,622	-				+0.3
2,768,642	-				+2.1
2,768,653	+				-1.2
2,768,658	+				+1.7
2,768,687	-				-0.1
2,768,700	+				-1.5
2,768,748	-				+0.9
2,768,757	+				+0.9
2,768,757	+				-0.8
2,768,823	-				+0.5
2,768,830	+				+0.4
2,768,838	-				-0.3
2,768,838	-				-0.1
2,768,838	-				+1.5
2,768,869	+				+0.9
2,768,869	+				+0.4
2,768,869	+				-0.2
2,768,877	-				-0.1
2,768,901	+				+0.5
2,768,947	-				+0.7
2,768,947	-				-0.8
2,768,973	-				+0.7
2,769,012	-				-0.6
2,769,091	+				-1.1
2,769,092	+				+0.6
2,769,094	-				+1.0
2,769,099	-				-0.7
2,769,100	-				+1.1
2,769,130	-		MIT1002_02481	0.21	+0.2
2,769,138	-		MIT1002_02481	0.25	-0.4
2,769,138	-		MIT1002_02481	0.25	+0.4
2,769,156	+		MIT1002_02481	0.32	+0.0
2,769,219	+		MIT1002_02481	0.60	+0.5
2,769,219	+		MIT1002_02481	0.60	+2.1
2,769,227	-		MIT1002_02481	0.63	+0.4
2,769,227	-		MIT1002_02481	0.63	+0.2
2,769,227	-		MIT1002_02481	0.63	+0.9
2,769,229	+		MIT1002_02481	0.64	+0.9
2,769,237	-		MIT1002_02481	0.68	+1.4
2,769,252	-		MIT1002_02481	0.74	+0.6
2,769,252	-		MIT1002_02481	0.74	+0.9
2,769,314	-				-1.9
2,769,448	+		MIT1002_02482	0.18	+0.6
2,769,448	+		MIT1002_02482	0.18	-0.0
2,769,483	+		MIT1002_02482	0.24	-0.2
2,769,483	+		MIT1002_02482	0.24	+0.2
2,769,491	-		MIT1002_02482	0.26	-1.0
2,769,491	-		MIT1002_02482	0.26	+0.0
2,769,503	-		MIT1002_02482	0.28	+0.1
2,769,503	-		MIT1002_02482	0.28	+0.5
2,769,509	-		MIT1002_02482	0.29	+0.9
2,769,546	-		MIT1002_02482	0.36	+0.3
2,769,583	+		MIT1002_02482	0.42	+1.1
2,769,583	+		MIT1002_02482	0.42	-0.6
2,769,590	+		MIT1002_02482	0.44	-0.3
2,769,608	-		MIT1002_02482	0.47	-0.1
2,769,644	+		MIT1002_02482	0.54	-0.0
2,769,651	-		MIT1002_02482	0.55	+1.1
2,769,652	-		MIT1002_02482	0.55	-0.1
2,769,655	+		MIT1002_02482	0.56	-0.7
2,769,682	+		MIT1002_02482	0.60	-0.5
2,769,727	+		MIT1002_02482	0.69	-0.4
2,769,738	+		MIT1002_02482	0.71	+0.7
2,769,746	-		MIT1002_02482	0.72	+0.2
2,769,793	-		MIT1002_02482	0.81	+0.0
2,769,793	-		MIT1002_02482	0.81	-0.6
2,769,811	-		MIT1002_02482	0.84	+0.8
2,769,813	+		MIT1002_02482	0.84	+0.8
2,769,819	+		MIT1002_02482	0.85	-0.2
2,769,821	-		MIT1002_02482	0.86	+0.1
2,769,821	-		MIT1002_02482	0.86	-0.6
2,769,821	-		MIT1002_02482	0.86	-0.5
2,769,827	-		MIT1002_02482	0.87	-0.1
2,769,829	+		MIT1002_02482	0.87	+0.7
2,769,855	+				+0.1
2,769,855	+				+0.2
2,769,860	-				+1.2
2,769,860	-				+1.2
2,769,862	+				+0.4
2,769,862	+				-1.1
2,769,862	+				-0.7
2,769,862	+				-0.5
2,769,863	-				-0.7
2,769,870	-				-0.4
2,769,873	-				+1.0
2,769,889	-				-1.5
2,769,908	-				-0.4
2,769,917	-				-1.5
2,770,073	-				+0.1
2,770,077	+				-0.7
2,770,175	-				+1.4
2,770,187	-				+0.4
2,770,270	+				+0.4
2,770,294	+				+1.1
2,770,303	-				-0.9
2,770,373	-		MIT1002_02483	0.16	+1.7
2,770,397	-		MIT1002_02483	0.19	+2.3
2,770,583	-		MIT1002_02483	0.40	+1.9
2,770,583	-		MIT1002_02483	0.40	-0.1
2,770,605	+		MIT1002_02483	0.42	-0.6
2,770,613	-		MIT1002_02483	0.43	-1.2
2,770,639	+		MIT1002_02483	0.46	+1.7
2,770,669	+		MIT1002_02483	0.49	-0.9
2,770,694	+		MIT1002_02483	0.52	-0.2
2,770,742	-		MIT1002_02483	0.58	+0.8
2,770,756	+		MIT1002_02483	0.59	+0.2
2,770,771	-		MIT1002_02483	0.61	+0.1
2,770,838	+		MIT1002_02483	0.69	+0.4