Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02443

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2
2,723,936	-				-0.2
2,723,957	+				-0.9
2,723,957	+				-0.8
2,723,969	-		MIT1002_02442	0.11	+0.2
2,723,978	+		MIT1002_02442	0.12	-0.1
2,723,984	+		MIT1002_02442	0.12	+1.4
2,723,992	-		MIT1002_02442	0.13	-2.0
2,724,049	+		MIT1002_02442	0.19	-0.0
2,724,055	-		MIT1002_02442	0.19	+0.5
2,724,057	-		MIT1002_02442	0.20	+0.8
2,724,105	+		MIT1002_02442	0.24	-1.0
2,724,113	-		MIT1002_02442	0.25	+0.1
2,724,226	-		MIT1002_02442	0.36	+0.9
2,724,280	+		MIT1002_02442	0.41	-0.4
2,724,296	+		MIT1002_02442	0.43	+0.9
2,724,298	+		MIT1002_02442	0.43	-0.0
2,724,328	+		MIT1002_02442	0.46	+1.4
2,724,336	+		MIT1002_02442	0.46	+0.1
2,724,336	+		MIT1002_02442	0.46	-0.8
2,724,336	+		MIT1002_02442	0.46	-0.7
2,724,336	+		MIT1002_02442	0.46	-0.7
2,724,336	-		MIT1002_02442	0.46	+1.3
2,724,336	-		MIT1002_02442	0.46	+0.0
2,724,344	-		MIT1002_02442	0.47	-0.2
2,724,428	-		MIT1002_02442	0.55	-0.1
2,724,487	+		MIT1002_02442	0.61	-1.2
2,724,487	+		MIT1002_02442	0.61	+0.9
2,724,487	+		MIT1002_02442	0.61	+0.3
2,724,487	+		MIT1002_02442	0.61	+0.6
2,724,495	-		MIT1002_02442	0.62	-0.7
2,724,607	+		MIT1002_02442	0.73	+0.6
2,724,614	+		MIT1002_02442	0.73	+1.8
2,724,614	+		MIT1002_02442	0.73	+0.5
2,724,622	-		MIT1002_02442	0.74	-0.6
2,724,658	-		MIT1002_02442	0.78	-0.6
2,724,685	+		MIT1002_02442	0.80	+0.4
2,724,715	-		MIT1002_02442	0.83	+0.0
2,724,720	-		MIT1002_02442	0.84	-0.8
2,724,720	-		MIT1002_02442	0.84	-0.5
2,724,737	+		MIT1002_02442	0.85	+0.8
2,724,737	+		MIT1002_02442	0.85	+1.6
2,724,737	+		MIT1002_02442	0.85	-0.6
2,724,745	-		MIT1002_02442	0.86	+0.3
2,724,745	-		MIT1002_02442	0.86	-0.9
2,724,784	-		MIT1002_02442	0.90	+0.1
2,724,902	-				+1.1
2,724,934	-				+0.3
2,724,942	+				+0.3
2,725,000	-				+0.1
2,725,029	-				-0.5
2,725,029	-				-0.7
2,725,029	-				+0.2
2,725,059	+		MIT1002_02443	0.12	+1.2
2,725,059	+		MIT1002_02443	0.12	+0.9
2,725,059	+		MIT1002_02443	0.12	+0.0
2,725,059	+		MIT1002_02443	0.12	-0.2
2,725,059	+		MIT1002_02443	0.12	+0.1
2,725,067	-		MIT1002_02443	0.13	-5.1
2,725,067	-		MIT1002_02443	0.13	+1.5
2,725,101	-		MIT1002_02443	0.16	-1.1
2,725,101	-		MIT1002_02443	0.16	+0.1
2,725,179	+		MIT1002_02443	0.22	+0.0
2,725,218	+		MIT1002_02443	0.25	-0.8
2,725,228	+		MIT1002_02443	0.26	-1.0
2,725,228	+		MIT1002_02443	0.26	-2.1
2,725,236	-		MIT1002_02443	0.26	-0.8
2,725,237	-		MIT1002_02443	0.26	-0.2
2,725,304	+		MIT1002_02443	0.31	-0.6
2,725,393	-		MIT1002_02443	0.38	-0.2
2,725,393	-		MIT1002_02443	0.38	-0.3
2,725,395	+		MIT1002_02443	0.39	+1.4
2,725,453	-		MIT1002_02443	0.43	-0.9
2,725,494	-		MIT1002_02443	0.46	-1.7
2,725,510	+		MIT1002_02443	0.48	-1.0
2,725,513	-		MIT1002_02443	0.48	+0.1
2,725,517	-		MIT1002_02443	0.48	+0.1
2,725,531	+		MIT1002_02443	0.49	+0.6
2,725,555	-		MIT1002_02443	0.51	-0.6
2,725,566	-		MIT1002_02443	0.52	+0.3
2,725,573	+		MIT1002_02443	0.53	+0.2
2,725,660	+		MIT1002_02443	0.59	-1.3
2,725,660	+		MIT1002_02443	0.59	-0.0
2,725,660	+		MIT1002_02443	0.59	-2.7
2,725,660	+		MIT1002_02443	0.59	-0.5
2,725,668	-		MIT1002_02443	0.60	-1.2
2,725,668	-		MIT1002_02443	0.60	-0.4
2,725,668	-		MIT1002_02443	0.60	-0.4
2,725,668	-		MIT1002_02443	0.60	-1.6
2,725,668	-		MIT1002_02443	0.60	+1.5
2,725,668	-		MIT1002_02443	0.60	+0.2
2,725,740	-		MIT1002_02443	0.66	+0.3
2,725,775	-		MIT1002_02443	0.68	+1.3
2,725,814	-		MIT1002_02443	0.71	-0.2
2,725,814	-		MIT1002_02443	0.71	-3.0
2,725,816	+		MIT1002_02443	0.72	+0.7
2,725,816	+		MIT1002_02443	0.72	-0.6
2,725,816	+		MIT1002_02443	0.72	+1.0
2,725,816	+		MIT1002_02443	0.72	-0.5
2,725,816	+		MIT1002_02443	0.72	+0.3
2,725,816	+		MIT1002_02443	0.72	-0.1
2,725,824	-		MIT1002_02443	0.72	+0.9
2,725,830	-		MIT1002_02443	0.73	+1.0
2,725,865	+		MIT1002_02443	0.75	+0.5
2,725,866	-		MIT1002_02443	0.75	+0.2
2,725,891	+		MIT1002_02443	0.77	+0.0
2,725,891	+		MIT1002_02443	0.77	-0.1
2,725,891	+		MIT1002_02443	0.77	+2.4
2,725,891	+		MIT1002_02443	0.77	-0.5
2,725,891	+		MIT1002_02443	0.77	-2.5
2,725,899	-		MIT1002_02443	0.78	+0.1
2,725,899	-		MIT1002_02443	0.78	+0.7
2,725,899	-		MIT1002_02443	0.78	-1.0
2,725,899	-		MIT1002_02443	0.78	+0.9
2,725,899	-		MIT1002_02443	0.78	-0.0
2,725,929	-		MIT1002_02443	0.80	+0.3
2,725,957	-		MIT1002_02443	0.83	+0.7
2,725,960	+		MIT1002_02443	0.83	-0.7
2,725,960	+		MIT1002_02443	0.83	+0.2
2,725,960	+		MIT1002_02443	0.83	+0.3
2,725,994	+		MIT1002_02443	0.85	+1.4
2,726,001	+		MIT1002_02443	0.86	+0.2
2,726,055	-				-1.0
2,726,055	-				+0.6
2,726,058	-				-0.5
2,726,082	-				+0.6
2,726,089	+				+1.3
2,726,097	-				+1.4
2,726,097	-				+0.0
2,726,134	-				-1.8
2,726,160	-				+0.8
2,726,184	+				-0.2
2,726,191	+				-0.5
2,726,191	+				-0.6
2,726,192	-				-0.5
2,726,198	+				-0.5
2,726,199	+				-0.2
2,726,199	+				+0.2
2,726,199	+				+0.7
2,726,199	+				+1.6
2,726,207	-				+0.0
2,726,207	-				-1.7
2,726,207	-				+1.4
2,726,207	-				-0.6
2,726,241	+				-0.4
2,726,359	+				-0.9
2,726,409	+		MIT1002_02444	0.10	-0.1
2,726,417	-		MIT1002_02444	0.11	+2.3
2,726,456	+		MIT1002_02444	0.15	+0.6
2,726,468	+		MIT1002_02444	0.17	-0.1
2,726,496	-		MIT1002_02444	0.20	+0.3
2,726,727	-		MIT1002_02444	0.44	-0.6
2,726,750	-		MIT1002_02444	0.47	+1.2
2,726,828	+		MIT1002_02444	0.55	+0.1
2,726,898	-		MIT1002_02444	0.62	-2.1
2,726,946	+		MIT1002_02444	0.68	+1.2
2,726,992	-		MIT1002_02444	0.73	+0.3
2,727,025	+		MIT1002_02444	0.76	-2.6
2,727,084	+		MIT1002_02444	0.82	-2.7
2,727,097	-		MIT1002_02444	0.84	+1.3
2,727,173	-				+0.8