Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01912

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2
2,119,765	+		MIT1002_01910	0.20	-1.1
2,119,798	-		MIT1002_01910	0.33	+1.2
2,119,804	+		MIT1002_01910	0.35	+0.6
2,119,812	-		MIT1002_01910	0.38	+1.8
2,119,840	-		MIT1002_01910	0.49	+1.2
2,119,856	+		MIT1002_01910	0.55	+0.7
2,119,864	-		MIT1002_01910	0.58	-0.5
2,119,991	+				-1.1
2,119,998	+				-0.7
2,120,181	-		MIT1002_01911	0.30	+1.0
2,120,214	+		MIT1002_01911	0.36	+0.0
2,120,222	-		MIT1002_01911	0.37	+1.2
2,120,227	-		MIT1002_01911	0.38	+0.2
2,120,433	-		MIT1002_01911	0.76	+1.0
2,120,482	-		MIT1002_01911	0.85	+0.1
2,120,501	+		MIT1002_01911	0.88	-0.0
2,120,511	+				-0.9
2,120,511	+				+0.7
2,120,618	+				+1.9
2,120,618	+				-0.3
2,120,699	+				+1.1
2,120,704	+				-0.2
2,120,706	+				+1.1
2,120,714	-				+1.5
2,120,781	+		MIT1002_01912	0.13	+0.6
2,120,789	-		MIT1002_01912	0.14	+0.4
2,120,789	-		MIT1002_01912	0.14	+0.3
2,120,892	+		MIT1002_01912	0.24	-0.9
2,120,899	-		MIT1002_01912	0.25	-0.2
2,120,899	-		MIT1002_01912	0.25	+0.6
2,120,939	+		MIT1002_01912	0.28	+0.1
2,120,939	+		MIT1002_01912	0.28	-0.6
2,121,004	-		MIT1002_01912	0.35	-0.8
2,121,008	+		MIT1002_01912	0.35	+0.7
2,121,072	+		MIT1002_01912	0.41	+0.4
2,121,295	+		MIT1002_01912	0.62	-1.2
2,121,420	+		MIT1002_01912	0.74	+0.2
2,121,428	-		MIT1002_01912	0.75	+0.1
2,121,428	-		MIT1002_01912	0.75	-0.0
2,121,478	+		MIT1002_01912	0.80	-1.5
2,121,493	-		MIT1002_01912	0.81	-0.7
2,121,643	-				+0.7
2,121,649	+				-2.6
2,121,649	+				+1.8
2,121,652	-				-0.8
2,121,657	-				+0.9
2,121,691	-				+0.3
2,121,768	-				+0.2
2,121,772	+				+0.1
2,121,900	+				+0.8
2,121,900	+				+1.5
2,121,901	-				-0.9
2,121,908	-				+0.1
2,121,910	+				+0.0
2,121,910	+				+1.0
2,121,918	+				+0.1
2,121,918	-				-0.3
2,122,029	-				+0.1
2,122,212	+				-1.1
2,122,220	-				+1.2
2,122,238	+				-0.9
2,122,322	-		MIT1002_01913	0.14	-1.1
2,122,347	-		MIT1002_01913	0.17	-0.5
2,122,437	-		MIT1002_01913	0.25	+3.2
2,122,447	+		MIT1002_01913	0.26	+1.1
2,122,455	-		MIT1002_01913	0.27	+0.7
2,122,463	-		MIT1002_01913	0.28	-0.3
2,122,484	-		MIT1002_01913	0.30	-1.1
2,122,530	-		MIT1002_01913	0.34	-2.4