Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01525

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01524 and MIT1002_01525 are separated by 134 nucleotidesMIT1002_01525 and MIT1002_01526 are separated by 65 nucleotidesMIT1002_01526 and MIT1002_01527 are separated by 16 nucleotides MIT1002_01524: MIT1002_01524 - Elongation factor G 1, at 1,673,378 to 1,675,465 _01524 MIT1002_01525: MIT1002_01525 - hypothetical protein, at 1,675,600 to 1,675,995 _01525 MIT1002_01526: MIT1002_01526 - putative transposase OrfB, at 1,676,061 to 1,676,828 _01526 MIT1002_01527: MIT1002_01527 - cyanate hydratase, at 1,676,845 to 1,677,009 _01527 Position (kb) 1675 1676Strain fitness (log2 ratio) -1 0 1at 1675.490 kb on + strandat 1676.158 kb on - strand, within MIT1002_01526at 1676.870 kb on - strand, within MIT1002_01527at 1676.902 kb on - strand, within MIT1002_01527at 1676.902 kb on - strand, within MIT1002_01527at 1676.951 kb on - strand, within MIT1002_01527at 1676.977 kb on - strand, within MIT1002_01527

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2
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1,675,490 + +0.1
1,676,158 - MIT1002_01526 0.13 -0.6
1,676,870 - MIT1002_01527 0.15 -0.6
1,676,902 - MIT1002_01527 0.35 +0.3
1,676,902 - MIT1002_01527 0.35 -0.2
1,676,951 - MIT1002_01527 0.64 +0.9
1,676,977 - MIT1002_01527 0.80 -1.2

Or see this region's nucleotide sequence