Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01443

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01441 and MIT1002_01442 are separated by 105 nucleotidesMIT1002_01442 and MIT1002_01443 are separated by 124 nucleotidesMIT1002_01443 and MIT1002_01444 are separated by 402 nucleotides MIT1002_01441: MIT1002_01441 - Thiopurine S-methyltransferase, at 1,585,184 to 1,585,837 _01441 MIT1002_01442: MIT1002_01442 - Outer membrane protein assembly factor BamE precursor, at 1,585,943 to 1,586,299 _01442 MIT1002_01443: MIT1002_01443 - Recombination protein N, at 1,586,424 to 1,588,109 _01443 MIT1002_01444: MIT1002_01444 - DNA protection during starvation protein, at 1,588,512 to 1,589,021 _01444 Position (kb) 1586 1587 1588 1589Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1585.562 kb on + strand, within MIT1002_01441at 1585.570 kb on - strand, within MIT1002_01441at 1585.576 kb on + strand, within MIT1002_01441at 1585.576 kb on + strand, within MIT1002_01441at 1585.576 kb on + strand, within MIT1002_01441at 1585.611 kb on - strand, within MIT1002_01441at 1585.619 kb on + strand, within MIT1002_01441at 1585.624 kb on + strand, within MIT1002_01441at 1585.632 kb on - strand, within MIT1002_01441at 1585.632 kb on - strand, within MIT1002_01441at 1585.632 kb on - strand, within MIT1002_01441at 1585.632 kb on - strand, within MIT1002_01441at 1585.632 kb on - strand, within MIT1002_01441at 1585.647 kb on - strand, within MIT1002_01441at 1585.676 kb on + strand, within MIT1002_01441at 1585.678 kb on + strand, within MIT1002_01441at 1585.701 kb on - strand, within MIT1002_01441at 1585.765 kb on + strand, within MIT1002_01441at 1585.772 kb on + strandat 1585.772 kb on + strandat 1585.780 kb on - strandat 1585.780 kb on - strandat 1585.789 kb on + strandat 1585.834 kb on - strandat 1585.893 kb on + strandat 1585.967 kb on - strandat 1585.989 kb on + strand, within MIT1002_01442at 1586.374 kb on - strandat 1586.594 kb on + strand, within MIT1002_01443at 1586.763 kb on + strand, within MIT1002_01443at 1586.763 kb on + strand, within MIT1002_01443at 1586.763 kb on + strand, within MIT1002_01443at 1586.780 kb on - strand, within MIT1002_01443at 1586.839 kb on + strand, within MIT1002_01443at 1586.848 kb on - strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.868 kb on + strand, within MIT1002_01443at 1586.876 kb on - strand, within MIT1002_01443at 1586.876 kb on - strand, within MIT1002_01443at 1586.876 kb on - strand, within MIT1002_01443at 1586.876 kb on - strand, within MIT1002_01443at 1586.876 kb on - strand, within MIT1002_01443at 1586.876 kb on - strand, within MIT1002_01443at 1586.876 kb on - strand, within MIT1002_01443at 1586.876 kb on - strand, within MIT1002_01443at 1586.876 kb on - strand, within MIT1002_01443at 1586.876 kb on - strand, within MIT1002_01443at 1586.934 kb on + strand, within MIT1002_01443at 1587.105 kb on - strand, within MIT1002_01443at 1587.119 kb on - strand, within MIT1002_01443at 1587.164 kb on - strand, within MIT1002_01443at 1587.179 kb on + strand, within MIT1002_01443at 1587.293 kb on + strand, within MIT1002_01443at 1587.308 kb on + strand, within MIT1002_01443at 1587.362 kb on + strand, within MIT1002_01443at 1587.422 kb on - strand, within MIT1002_01443at 1587.436 kb on - strand, within MIT1002_01443at 1587.466 kb on + strand, within MIT1002_01443at 1587.466 kb on + strand, within MIT1002_01443at 1587.536 kb on + strand, within MIT1002_01443at 1587.578 kb on + strand, within MIT1002_01443at 1587.586 kb on - strand, within MIT1002_01443at 1587.591 kb on + strand, within MIT1002_01443at 1587.695 kb on + strand, within MIT1002_01443at 1587.696 kb on + strand, within MIT1002_01443at 1587.696 kb on + strand, within MIT1002_01443at 1587.882 kb on + strand, within MIT1002_01443at 1587.890 kb on - strand, within MIT1002_01443at 1587.970 kb on + strandat 1588.021 kb on - strandat 1588.026 kb on + strandat 1588.034 kb on - strandat 1588.336 kb on + strandat 1588.432 kb on + strandat 1588.475 kb on + strandat 1588.484 kb on - strandat 1588.510 kb on - strandat 1588.537 kb on + strandat 1588.537 kb on + strandat 1588.545 kb on - strandat 1588.545 kb on - strandat 1588.545 kb on - strandat 1588.560 kb on + strandat 1588.645 kb on + strand, within MIT1002_01444at 1588.645 kb on + strand, within MIT1002_01444at 1588.651 kb on - strand, within MIT1002_01444at 1588.676 kb on - strand, within MIT1002_01444at 1588.676 kb on - strand, within MIT1002_01444at 1588.687 kb on + strand, within MIT1002_01444at 1588.695 kb on - strand, within MIT1002_01444at 1588.695 kb on - strand, within MIT1002_01444at 1588.695 kb on - strand, within MIT1002_01444at 1588.711 kb on + strand, within MIT1002_01444at 1588.721 kb on + strand, within MIT1002_01444at 1588.776 kb on - strand, within MIT1002_01444at 1588.852 kb on - strand, within MIT1002_01444at 1588.952 kb on - strand, within MIT1002_01444at 1588.960 kb on + strand, within MIT1002_01444

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2
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1,585,562 + MIT1002_01441 0.58 +1.9
1,585,570 - MIT1002_01441 0.59 +0.5
1,585,576 + MIT1002_01441 0.60 +2.0
1,585,576 + MIT1002_01441 0.60 +0.1
1,585,576 + MIT1002_01441 0.60 -0.2
1,585,611 - MIT1002_01441 0.65 +0.7
1,585,619 + MIT1002_01441 0.67 -2.1
1,585,624 + MIT1002_01441 0.67 -0.0
1,585,632 - MIT1002_01441 0.69 -1.5
1,585,632 - MIT1002_01441 0.69 +0.7
1,585,632 - MIT1002_01441 0.69 +0.7
1,585,632 - MIT1002_01441 0.69 +0.7
1,585,632 - MIT1002_01441 0.69 +0.3
1,585,647 - MIT1002_01441 0.71 -0.3
1,585,676 + MIT1002_01441 0.75 +0.9
1,585,678 + MIT1002_01441 0.76 -0.2
1,585,701 - MIT1002_01441 0.79 -0.0
1,585,765 + MIT1002_01441 0.89 +0.1
1,585,772 + -0.6
1,585,772 + -0.2
1,585,780 - +1.3
1,585,780 - -1.6
1,585,789 + -1.8
1,585,834 - +0.5
1,585,893 + -0.7
1,585,967 - -0.7
1,585,989 + MIT1002_01442 0.13 -1.5
1,586,374 - -1.3
1,586,594 + MIT1002_01443 0.10 -0.9
1,586,763 + MIT1002_01443 0.20 -2.9
1,586,763 + MIT1002_01443 0.20 +0.7
1,586,763 + MIT1002_01443 0.20 +0.5
1,586,780 - MIT1002_01443 0.21 -1.4
1,586,839 + MIT1002_01443 0.25 -0.1
1,586,848 - MIT1002_01443 0.25 +0.8
1,586,868 + MIT1002_01443 0.26 -0.3
1,586,868 + MIT1002_01443 0.26 -0.4
1,586,868 + MIT1002_01443 0.26 +0.1
1,586,868 + MIT1002_01443 0.26 -0.9
1,586,868 + MIT1002_01443 0.26 +0.4
1,586,868 + MIT1002_01443 0.26 +0.2
1,586,868 + MIT1002_01443 0.26 +0.1
1,586,868 + MIT1002_01443 0.26 -2.3
1,586,868 + MIT1002_01443 0.26 -0.4
1,586,868 + MIT1002_01443 0.26 +0.6
1,586,868 + MIT1002_01443 0.26 -1.3
1,586,868 + MIT1002_01443 0.26 +0.2
1,586,868 + MIT1002_01443 0.26 -0.5
1,586,868 + MIT1002_01443 0.26 -0.6
1,586,868 + MIT1002_01443 0.26 -0.8
1,586,868 + MIT1002_01443 0.26 +1.4
1,586,868 + MIT1002_01443 0.26 -1.9
1,586,876 - MIT1002_01443 0.27 -0.4
1,586,876 - MIT1002_01443 0.27 -0.6
1,586,876 - MIT1002_01443 0.27 -1.6
1,586,876 - MIT1002_01443 0.27 -1.9
1,586,876 - MIT1002_01443 0.27 +0.8
1,586,876 - MIT1002_01443 0.27 +0.3
1,586,876 - MIT1002_01443 0.27 -1.8
1,586,876 - MIT1002_01443 0.27 +0.4
1,586,876 - MIT1002_01443 0.27 -0.1
1,586,876 - MIT1002_01443 0.27 +1.6
1,586,934 + MIT1002_01443 0.30 -0.7
1,587,105 - MIT1002_01443 0.40 -0.2
1,587,119 - MIT1002_01443 0.41 -0.6
1,587,164 - MIT1002_01443 0.44 +0.2
1,587,179 + MIT1002_01443 0.45 +1.6
1,587,293 + MIT1002_01443 0.52 +0.0
1,587,308 + MIT1002_01443 0.52 -1.2
1,587,362 + MIT1002_01443 0.56 -0.9
1,587,422 - MIT1002_01443 0.59 -2.2
1,587,436 - MIT1002_01443 0.60 -0.1
1,587,466 + MIT1002_01443 0.62 -0.4
1,587,466 + MIT1002_01443 0.62 -0.6
1,587,536 + MIT1002_01443 0.66 +1.0
1,587,578 + MIT1002_01443 0.68 -1.2
1,587,586 - MIT1002_01443 0.69 -0.7
1,587,591 + MIT1002_01443 0.69 +0.5
1,587,695 + MIT1002_01443 0.75 +1.3
1,587,696 + MIT1002_01443 0.75 +1.1
1,587,696 + MIT1002_01443 0.75 +1.2
1,587,882 + MIT1002_01443 0.86 +2.1
1,587,890 - MIT1002_01443 0.87 +0.5
1,587,970 + -0.5
1,588,021 - -0.1
1,588,026 + +0.5
1,588,034 - -1.5
1,588,336 + +0.2
1,588,432 + +0.1
1,588,475 + +0.3
1,588,484 - -0.0
1,588,510 - +0.4
1,588,537 + -0.6
1,588,537 + +0.6
1,588,545 - -0.2
1,588,545 - +1.7
1,588,545 - +0.2
1,588,560 + -1.4
1,588,645 + MIT1002_01444 0.26 +0.9
1,588,645 + MIT1002_01444 0.26 +1.1
1,588,651 - MIT1002_01444 0.27 -0.4
1,588,676 - MIT1002_01444 0.32 -0.9
1,588,676 - MIT1002_01444 0.32 +1.2
1,588,687 + MIT1002_01444 0.34 +2.3
1,588,695 - MIT1002_01444 0.36 +1.1
1,588,695 - MIT1002_01444 0.36 +0.2
1,588,695 - MIT1002_01444 0.36 -0.5
1,588,711 + MIT1002_01444 0.39 -0.8
1,588,721 + MIT1002_01444 0.41 +0.6
1,588,776 - MIT1002_01444 0.52 -2.3
1,588,852 - MIT1002_01444 0.67 +0.7
1,588,952 - MIT1002_01444 0.86 +0.2
1,588,960 + MIT1002_01444 0.88 +0.5

Or see this region's nucleotide sequence