Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00979

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00978 and MIT1002_00979 are separated by 180 nucleotidesMIT1002_00979 and MIT1002_00980 overlap by 4 nucleotides MIT1002_00978: MIT1002_00978 - Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase, at 1,084,969 to 1,086,030 _00978 MIT1002_00979: MIT1002_00979 - Putative glycosyltransferase EpsE, at 1,086,211 to 1,087,032 _00979 MIT1002_00980: MIT1002_00980 - rhamnosyltransferase, at 1,087,029 to 1,087,925 _00980 Position (kb) 1086 1087 1088Strain fitness (log2 ratio) -3 -2 -1 0 1at 1086.006 kb on - strandat 1086.015 kb on + strandat 1086.023 kb on - strandat 1086.065 kb on + strandat 1087.873 kb on + strandat 1087.973 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2
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1,086,006 - -1.4
1,086,015 + -3.1
1,086,023 - -1.0
1,086,065 + -0.6
1,087,873 + -0.4
1,087,973 + -1.2

Or see this region's nucleotide sequence