Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00885 and MIT1002_00886 are separated by 46 nucleotides MIT1002_00886 and MIT1002_00887 are separated by 24 nucleotides MIT1002_00887 and MIT1002_00888 are separated by 84 nucleotides MIT1002_00888 and MIT1002_00889 are separated by 138 nucleotides
MIT1002_00885: MIT1002_00885 - hypothetical protein, at 976,947 to 977,474
_00885
MIT1002_00886: MIT1002_00886 - hemolysin, at 977,521 to 978,195
_00886
MIT1002_00887: MIT1002_00887 - hypothetical protein, at 978,220 to 978,459
_00887
MIT1002_00888: MIT1002_00888 - Organic hydroperoxide resistance transcriptional regulator, at 978,544 to 978,987
_00888
MIT1002_00889: MIT1002_00889 - General stress protein 17o, at 979,126 to 979,554
_00889
Position (kb) 978
979 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 977.255 kb on - strand, within MIT1002_00885 at 977.275 kb on + strand, within MIT1002_00885 at 977.299 kb on - strand, within MIT1002_00885 at 977.301 kb on + strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.319 kb on + strand, within MIT1002_00885 at 977.321 kb on + strand, within MIT1002_00885 at 977.321 kb on + strand, within MIT1002_00885 at 977.335 kb on + strand, within MIT1002_00885 at 977.335 kb on + strand, within MIT1002_00885 at 977.343 kb on - strand, within MIT1002_00885 at 977.343 kb on - strand, within MIT1002_00885 at 977.343 kb on - strand, within MIT1002_00885 at 977.390 kb on - strand, within MIT1002_00885 at 977.431 kb on + strand at 977.639 kb on - strand, within MIT1002_00886 at 977.676 kb on - strand, within MIT1002_00886 at 977.686 kb on - strand, within MIT1002_00886 at 977.702 kb on + strand, within MIT1002_00886 at 977.707 kb on + strand, within MIT1002_00886 at 977.708 kb on + strand, within MIT1002_00886 at 977.713 kb on + strand, within MIT1002_00886 at 977.714 kb on - strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.778 kb on - strand, within MIT1002_00886 at 977.840 kb on - strand, within MIT1002_00886 at 977.933 kb on + strand, within MIT1002_00886 at 977.994 kb on + strand, within MIT1002_00886 at 978.001 kb on + strand, within MIT1002_00886 at 978.084 kb on + strand, within MIT1002_00886 at 978.104 kb on - strand, within MIT1002_00886 at 978.104 kb on - strand, within MIT1002_00886 at 978.104 kb on - strand, within MIT1002_00886 at 978.123 kb on + strand, within MIT1002_00886 at 978.128 kb on + strand at 978.128 kb on + strand at 978.136 kb on - strand at 978.136 kb on - strand at 978.243 kb on + strand at 978.335 kb on - strand, within MIT1002_00887 at 978.512 kb on + strand at 978.512 kb on + strand at 978.519 kb on + strand at 978.520 kb on - strand at 978.520 kb on - strand at 978.527 kb on - strand at 978.547 kb on + strand at 978.615 kb on - strand, within MIT1002_00888 at 978.632 kb on + strand, within MIT1002_00888 at 978.661 kb on - strand, within MIT1002_00888 at 978.788 kb on + strand, within MIT1002_00888 at 978.796 kb on - strand, within MIT1002_00888 at 978.796 kb on - strand, within MIT1002_00888 at 978.804 kb on - strand, within MIT1002_00888 at 978.863 kb on - strand, within MIT1002_00888 at 978.914 kb on + strand, within MIT1002_00888 at 978.934 kb on - strand, within MIT1002_00888 at 978.991 kb on + strand at 978.999 kb on - strand at 978.999 kb on - strand at 978.999 kb on - strand at 979.109 kb on + strand at 979.117 kb on - strand at 979.127 kb on - strand at 979.154 kb on - strand at 979.217 kb on + strand, within MIT1002_00889 at 979.217 kb on + strand, within MIT1002_00889 at 979.225 kb on - strand, within MIT1002_00889 at 979.235 kb on - strand, within MIT1002_00889 at 979.235 kb on - strand, within MIT1002_00889 at 979.328 kb on - strand, within MIT1002_00889 at 979.373 kb on - strand, within MIT1002_00889 at 979.402 kb on + strand, within MIT1002_00889 at 979.452 kb on + strand, within MIT1002_00889
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2 remove 977,255 - MIT1002_00885 0.58 +0.2 977,275 + MIT1002_00885 0.62 +0.5 977,299 - MIT1002_00885 0.67 -0.2 977,301 + MIT1002_00885 0.67 +1.2 977,309 - MIT1002_00885 0.69 +0.5 977,309 - MIT1002_00885 0.69 +1.7 977,309 - MIT1002_00885 0.69 +2.1 977,309 - MIT1002_00885 0.69 -0.7 977,319 + MIT1002_00885 0.70 +0.1 977,321 + MIT1002_00885 0.71 +0.2 977,321 + MIT1002_00885 0.71 +0.2 977,335 + MIT1002_00885 0.73 +0.1 977,335 + MIT1002_00885 0.73 +0.0 977,343 - MIT1002_00885 0.75 +0.3 977,343 - MIT1002_00885 0.75 -2.4 977,343 - MIT1002_00885 0.75 +0.3 977,390 - MIT1002_00885 0.84 +0.0 977,431 + +0.3 977,639 - MIT1002_00886 0.17 -1.0 977,676 - MIT1002_00886 0.23 -1.5 977,686 - MIT1002_00886 0.24 -2.0 977,702 + MIT1002_00886 0.27 +0.3 977,707 + MIT1002_00886 0.28 -0.4 977,708 + MIT1002_00886 0.28 -0.2 977,713 + MIT1002_00886 0.28 -0.5 977,714 - MIT1002_00886 0.29 -0.6 977,770 + MIT1002_00886 0.37 -0.4 977,770 + MIT1002_00886 0.37 +0.4 977,770 + MIT1002_00886 0.37 +0.9 977,778 - MIT1002_00886 0.38 +2.0 977,840 - MIT1002_00886 0.47 -0.2 977,933 + MIT1002_00886 0.61 -2.3 977,994 + MIT1002_00886 0.70 +0.3 978,001 + MIT1002_00886 0.71 +0.0 978,084 + MIT1002_00886 0.83 -0.1 978,104 - MIT1002_00886 0.86 +0.3 978,104 - MIT1002_00886 0.86 +0.0 978,104 - MIT1002_00886 0.86 +0.0 978,123 + MIT1002_00886 0.89 -2.4 978,128 + +0.2 978,128 + +0.5 978,136 - -1.3 978,136 - -0.6 978,243 + +1.5 978,335 - MIT1002_00887 0.48 +0.5 978,512 + +0.4 978,512 + +0.3 978,519 + +1.0 978,520 - +1.3 978,520 - -0.5 978,527 - -0.3 978,547 + +0.5 978,615 - MIT1002_00888 0.16 +0.4 978,632 + MIT1002_00888 0.20 -3.0 978,661 - MIT1002_00888 0.26 -0.6 978,788 + MIT1002_00888 0.55 +1.6 978,796 - MIT1002_00888 0.57 -0.7 978,796 - MIT1002_00888 0.57 +1.1 978,804 - MIT1002_00888 0.59 +1.4 978,863 - MIT1002_00888 0.72 -0.3 978,914 + MIT1002_00888 0.83 +0.3 978,934 - MIT1002_00888 0.88 -1.8 978,991 + -1.0 978,999 - +1.6 978,999 - +0.3 978,999 - +0.2 979,109 + -0.9 979,117 - +0.2 979,127 - +0.0 979,154 - +0.1 979,217 + MIT1002_00889 0.21 -0.1 979,217 + MIT1002_00889 0.21 +0.9 979,225 - MIT1002_00889 0.23 +0.4 979,235 - MIT1002_00889 0.25 -0.1 979,235 - MIT1002_00889 0.25 +0.6 979,328 - MIT1002_00889 0.47 -2.7 979,373 - MIT1002_00889 0.58 -1.3 979,402 + MIT1002_00889 0.64 +1.9 979,452 + MIT1002_00889 0.76 +0.9
Or see this region's nucleotide sequence