Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00672 and MIT1002_00673 overlap by 4 nucleotides MIT1002_00673 and MIT1002_00674 are separated by 127 nucleotides MIT1002_00674 and MIT1002_00675 are separated by 136 nucleotides
MIT1002_00672: MIT1002_00672 - putative dehydrogenase, at 736,435 to 736,923
_00672
MIT1002_00673: MIT1002_00673 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 736,920 to 737,723
_00673
MIT1002_00674: MIT1002_00674 - esterase YqiA, at 737,851 to 738,432
_00674
MIT1002_00675: MIT1002_00675 - DNA topoisomerase 4 subunit B, at 738,569 to 740,464
_00675
Position (kb) 737
738
739 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 736.852 kb on + strand, within MIT1002_00672 at 736.898 kb on + strand at 736.898 kb on + strand at 736.906 kb on - strand at 736.910 kb on + strand at 737.043 kb on + strand, within MIT1002_00673 at 737.072 kb on - strand, within MIT1002_00673 at 737.086 kb on + strand, within MIT1002_00673 at 737.128 kb on - strand, within MIT1002_00673 at 737.138 kb on - strand, within MIT1002_00673 at 737.283 kb on - strand, within MIT1002_00673 at 737.283 kb on - strand, within MIT1002_00673 at 737.370 kb on - strand, within MIT1002_00673 at 737.384 kb on + strand, within MIT1002_00673 at 737.460 kb on + strand, within MIT1002_00673 at 737.468 kb on - strand, within MIT1002_00673 at 737.527 kb on - strand, within MIT1002_00673 at 737.527 kb on - strand, within MIT1002_00673 at 737.528 kb on - strand, within MIT1002_00673 at 737.643 kb on - strand at 737.726 kb on - strand at 737.738 kb on + strand at 737.796 kb on + strand at 737.818 kb on + strand at 737.869 kb on + strand at 737.912 kb on + strand, within MIT1002_00674 at 737.920 kb on - strand, within MIT1002_00674 at 737.958 kb on - strand, within MIT1002_00674 at 737.968 kb on - strand, within MIT1002_00674 at 737.968 kb on - strand, within MIT1002_00674 at 738.018 kb on + strand, within MIT1002_00674 at 738.023 kb on + strand, within MIT1002_00674 at 738.023 kb on + strand, within MIT1002_00674 at 738.023 kb on + strand, within MIT1002_00674 at 738.126 kb on - strand, within MIT1002_00674 at 738.136 kb on + strand, within MIT1002_00674 at 738.161 kb on + strand, within MIT1002_00674 at 738.161 kb on + strand, within MIT1002_00674 at 738.170 kb on - strand, within MIT1002_00674 at 738.317 kb on - strand, within MIT1002_00674 at 738.345 kb on - strand, within MIT1002_00674 at 738.385 kb on - strand at 738.448 kb on + strand at 738.464 kb on + strand at 738.464 kb on + strand at 738.479 kb on + strand at 738.515 kb on + strand at 738.515 kb on + strand at 738.515 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2 remove 736,852 + MIT1002_00672 0.85 +0.4 736,898 + +0.2 736,898 + +0.0 736,906 - -0.1 736,910 + +0.8 737,043 + MIT1002_00673 0.15 -1.4 737,072 - MIT1002_00673 0.19 +0.8 737,086 + MIT1002_00673 0.21 +0.2 737,128 - MIT1002_00673 0.26 -0.7 737,138 - MIT1002_00673 0.27 -1.9 737,283 - MIT1002_00673 0.45 -2.3 737,283 - MIT1002_00673 0.45 -1.9 737,370 - MIT1002_00673 0.56 +1.8 737,384 + MIT1002_00673 0.58 -0.5 737,460 + MIT1002_00673 0.67 -0.1 737,468 - MIT1002_00673 0.68 -0.8 737,527 - MIT1002_00673 0.75 -0.2 737,527 - MIT1002_00673 0.75 -1.0 737,528 - MIT1002_00673 0.76 +0.8 737,643 - +0.3 737,726 - -0.2 737,738 + +0.1 737,796 + -1.4 737,818 + -0.3 737,869 + +1.2 737,912 + MIT1002_00674 0.10 +0.8 737,920 - MIT1002_00674 0.12 +0.2 737,958 - MIT1002_00674 0.18 +1.7 737,968 - MIT1002_00674 0.20 -0.0 737,968 - MIT1002_00674 0.20 +1.3 738,018 + MIT1002_00674 0.29 +0.7 738,023 + MIT1002_00674 0.30 +0.9 738,023 + MIT1002_00674 0.30 +1.7 738,023 + MIT1002_00674 0.30 +1.6 738,126 - MIT1002_00674 0.47 -1.9 738,136 + MIT1002_00674 0.49 +1.9 738,161 + MIT1002_00674 0.53 -1.4 738,161 + MIT1002_00674 0.53 -2.9 738,170 - MIT1002_00674 0.55 +1.1 738,317 - MIT1002_00674 0.80 -0.1 738,345 - MIT1002_00674 0.85 +1.4 738,385 - +0.1 738,448 + +1.3 738,464 + +1.4 738,464 + +0.1 738,479 + +0.4 738,515 + -0.6 738,515 + -1.9 738,515 + -1.2
Or see this region's nucleotide sequence