Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00650 and MIT1002_00651 are separated by 8 nucleotides MIT1002_00651 and MIT1002_00652 are separated by 9 nucleotides MIT1002_00652 and MIT1002_00653 overlap by 4 nucleotides MIT1002_00653 and MIT1002_00654 overlap by 6 nucleotides
MIT1002_00650: MIT1002_00650 - Prolipoprotein diacylglyceryl transferase, at 705,973 to 706,785
_00650
MIT1002_00651: MIT1002_00651 - Thymidylate synthase, at 706,794 to 707,627
_00651
MIT1002_00652: MIT1002_00652 - Chemotaxis protein CheY, at 707,637 to 708,707
_00652
MIT1002_00653: MIT1002_00653 - putative diguanylate cyclase AdrA, at 708,704 to 709,693
_00653
MIT1002_00654: MIT1002_00654 - Signal transduction histidine-protein kinase BarA, at 709,688 to 711,874
_00654
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1
2 at 706.727 kb on + strand at 707.629 kb on + strand at 707.696 kb on + strand at 707.696 kb on + strand at 707.704 kb on - strand at 707.745 kb on + strand, within MIT1002_00652 at 707.772 kb on + strand, within MIT1002_00652 at 707.772 kb on + strand, within MIT1002_00652 at 707.780 kb on - strand, within MIT1002_00652 at 707.780 kb on - strand, within MIT1002_00652 at 707.895 kb on + strand, within MIT1002_00652 at 707.897 kb on - strand, within MIT1002_00652 at 707.920 kb on + strand, within MIT1002_00652 at 707.979 kb on - strand, within MIT1002_00652 at 707.985 kb on - strand, within MIT1002_00652 at 708.155 kb on - strand, within MIT1002_00652 at 708.227 kb on + strand, within MIT1002_00652 at 708.227 kb on + strand, within MIT1002_00652 at 708.297 kb on + strand, within MIT1002_00652 at 708.297 kb on + strand, within MIT1002_00652 at 708.305 kb on - strand, within MIT1002_00652 at 708.436 kb on + strand, within MIT1002_00652 at 708.464 kb on + strand, within MIT1002_00652 at 708.509 kb on + strand, within MIT1002_00652 at 708.509 kb on + strand, within MIT1002_00652 at 708.509 kb on + strand, within MIT1002_00652 at 708.517 kb on - strand, within MIT1002_00652 at 708.519 kb on - strand, within MIT1002_00652 at 708.548 kb on + strand, within MIT1002_00652 at 708.550 kb on + strand, within MIT1002_00652 at 708.556 kb on - strand, within MIT1002_00652 at 708.556 kb on - strand, within MIT1002_00652 at 708.568 kb on - strand, within MIT1002_00652 at 708.655 kb on + strand at 708.655 kb on + strand at 708.663 kb on - strand at 708.700 kb on + strand at 708.770 kb on - strand at 708.788 kb on - strand at 708.829 kb on - strand, within MIT1002_00653 at 708.938 kb on - strand, within MIT1002_00653 at 708.955 kb on - strand, within MIT1002_00653 at 709.022 kb on + strand, within MIT1002_00653 at 709.027 kb on + strand, within MIT1002_00653 at 709.147 kb on + strand, within MIT1002_00653 at 709.155 kb on - strand, within MIT1002_00653 at 709.174 kb on + strand, within MIT1002_00653 at 709.219 kb on - strand, within MIT1002_00653 at 709.287 kb on - strand, within MIT1002_00653 at 709.369 kb on - strand, within MIT1002_00653 at 709.369 kb on - strand, within MIT1002_00653 at 709.374 kb on - strand, within MIT1002_00653 at 709.510 kb on + strand, within MIT1002_00653 at 709.518 kb on - strand, within MIT1002_00653 at 709.568 kb on + strand, within MIT1002_00653 at 709.614 kb on - strand at 709.685 kb on + strand at 709.688 kb on + strand at 709.688 kb on + strand at 709.693 kb on - strand at 709.701 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2 remove 706,727 + -0.0 707,629 + -2.1 707,696 + +1.8 707,696 + +0.8 707,704 - +0.3 707,745 + MIT1002_00652 0.10 -0.0 707,772 + MIT1002_00652 0.13 -0.7 707,772 + MIT1002_00652 0.13 -0.4 707,780 - MIT1002_00652 0.13 -1.5 707,780 - MIT1002_00652 0.13 -0.3 707,895 + MIT1002_00652 0.24 -0.5 707,897 - MIT1002_00652 0.24 +0.7 707,920 + MIT1002_00652 0.26 +0.6 707,979 - MIT1002_00652 0.32 +0.7 707,985 - MIT1002_00652 0.32 +0.5 708,155 - MIT1002_00652 0.48 -0.5 708,227 + MIT1002_00652 0.55 -0.8 708,227 + MIT1002_00652 0.55 -0.1 708,297 + MIT1002_00652 0.62 -0.1 708,297 + MIT1002_00652 0.62 -2.1 708,305 - MIT1002_00652 0.62 -0.7 708,436 + MIT1002_00652 0.75 -0.1 708,464 + MIT1002_00652 0.77 -0.5 708,509 + MIT1002_00652 0.81 -0.1 708,509 + MIT1002_00652 0.81 +0.3 708,509 + MIT1002_00652 0.81 +0.5 708,517 - MIT1002_00652 0.82 -0.9 708,519 - MIT1002_00652 0.82 -0.1 708,548 + MIT1002_00652 0.85 -2.5 708,550 + MIT1002_00652 0.85 +1.4 708,556 - MIT1002_00652 0.86 +0.8 708,556 - MIT1002_00652 0.86 -1.8 708,568 - MIT1002_00652 0.87 -0.4 708,655 + +1.6 708,655 + -0.3 708,663 - -0.1 708,700 + +0.2 708,770 - +0.6 708,788 - -2.3 708,829 - MIT1002_00653 0.13 +1.4 708,938 - MIT1002_00653 0.24 -0.8 708,955 - MIT1002_00653 0.25 -0.6 709,022 + MIT1002_00653 0.32 +0.5 709,027 + MIT1002_00653 0.33 +0.2 709,147 + MIT1002_00653 0.45 +1.4 709,155 - MIT1002_00653 0.46 +0.0 709,174 + MIT1002_00653 0.47 -0.1 709,219 - MIT1002_00653 0.52 +0.7 709,287 - MIT1002_00653 0.59 -1.6 709,369 - MIT1002_00653 0.67 +0.8 709,369 - MIT1002_00653 0.67 +1.0 709,374 - MIT1002_00653 0.68 -1.8 709,510 + MIT1002_00653 0.81 -1.7 709,518 - MIT1002_00653 0.82 -0.1 709,568 + MIT1002_00653 0.87 -0.5 709,614 - -0.2 709,685 + +0.7 709,688 + +0.5 709,688 + +0.4 709,693 - -0.2 709,701 - -0.0
Or see this region's nucleotide sequence