Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00078

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00077 and MIT1002_00078 are separated by 103 nucleotidesMIT1002_00078 and MIT1002_00079 are separated by 139 nucleotidesMIT1002_00079 and MIT1002_00080 are separated by 135 nucleotides MIT1002_00077: MIT1002_00077 - Malate-2H(+)/Na(+)-lactate antiporter, at 82,199 to 83,611 _00077 MIT1002_00078: MIT1002_00078 - Glycine betaine transporter OpuD, at 83,715 to 85,484 _00078 MIT1002_00079: MIT1002_00079 - hypothetical protein, at 85,624 to 86,253 _00079 MIT1002_00080: MIT1002_00080 - hypothetical protein, at 86,389 to 86,637 _00080 Position (kb) 83 84 85 86Strain fitness (log2 ratio) -2 -1 0 1 2 3at 82.780 kb on + strand, within MIT1002_00077at 82.792 kb on + strand, within MIT1002_00077at 82.792 kb on + strand, within MIT1002_00077at 82.792 kb on + strand, within MIT1002_00077at 82.792 kb on + strand, within MIT1002_00077at 82.797 kb on + strand, within MIT1002_00077at 82.800 kb on - strand, within MIT1002_00077at 82.800 kb on - strand, within MIT1002_00077at 82.800 kb on - strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.802 kb on + strand, within MIT1002_00077at 82.805 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077at 82.810 kb on - strand, within MIT1002_00077at 82.903 kb on + strand, within MIT1002_00077at 82.908 kb on + strand, within MIT1002_00077at 82.911 kb on - strand, within MIT1002_00077at 82.911 kb on - strand, within MIT1002_00077at 82.916 kb on - strand, within MIT1002_00077at 82.920 kb on + strand, within MIT1002_00077at 82.926 kb on - strand, within MIT1002_00077at 82.926 kb on - strand, within MIT1002_00077at 82.928 kb on - strand, within MIT1002_00077at 82.950 kb on + strand, within MIT1002_00077at 82.950 kb on + strand, within MIT1002_00077at 82.998 kb on + strand, within MIT1002_00077at 82.998 kb on + strand, within MIT1002_00077at 83.006 kb on - strand, within MIT1002_00077at 83.006 kb on - strand, within MIT1002_00077at 83.006 kb on - strand, within MIT1002_00077at 83.038 kb on + strand, within MIT1002_00077at 83.046 kb on - strand, within MIT1002_00077at 83.064 kb on - strand, within MIT1002_00077at 83.147 kb on - strand, within MIT1002_00077at 83.171 kb on - strand, within MIT1002_00077at 83.182 kb on + strand, within MIT1002_00077at 83.194 kb on + strand, within MIT1002_00077at 83.199 kb on + strand, within MIT1002_00077at 83.207 kb on - strand, within MIT1002_00077at 83.207 kb on - strand, within MIT1002_00077at 83.208 kb on - strand, within MIT1002_00077at 83.214 kb on - strand, within MIT1002_00077at 83.216 kb on + strand, within MIT1002_00077at 83.267 kb on + strand, within MIT1002_00077at 83.323 kb on - strand, within MIT1002_00077at 83.371 kb on + strand, within MIT1002_00077at 83.374 kb on - strand, within MIT1002_00077at 83.376 kb on - strand, within MIT1002_00077at 83.380 kb on - strand, within MIT1002_00077at 83.382 kb on - strand, within MIT1002_00077at 83.387 kb on + strand, within MIT1002_00077at 83.387 kb on + strand, within MIT1002_00077at 83.387 kb on + strand, within MIT1002_00077at 83.387 kb on + strand, within MIT1002_00077at 83.387 kb on + strand, within MIT1002_00077at 83.387 kb on + strand, within MIT1002_00077at 83.395 kb on - strand, within MIT1002_00077at 83.395 kb on - strand, within MIT1002_00077at 83.410 kb on - strand, within MIT1002_00077at 83.466 kb on + strand, within MIT1002_00077at 83.478 kb on + strandat 83.484 kb on - strandat 83.501 kb on + strandat 83.503 kb on - strandat 83.548 kb on - strandat 83.550 kb on - strandat 83.557 kb on + strandat 83.565 kb on - strandat 83.606 kb on + strandat 83.614 kb on - strandat 83.616 kb on + strandat 83.624 kb on - strandat 83.624 kb on - strandat 83.624 kb on - strandat 83.625 kb on - strandat 83.743 kb on + strandat 83.858 kb on + strandat 83.876 kb on - strandat 83.940 kb on + strand, within MIT1002_00078at 83.947 kb on + strand, within MIT1002_00078at 83.998 kb on + strand, within MIT1002_00078at 84.089 kb on + strand, within MIT1002_00078at 84.094 kb on + strand, within MIT1002_00078at 84.099 kb on + strand, within MIT1002_00078at 84.106 kb on + strand, within MIT1002_00078at 84.112 kb on - strand, within MIT1002_00078at 84.114 kb on - strand, within MIT1002_00078at 84.176 kb on - strand, within MIT1002_00078at 84.237 kb on - strand, within MIT1002_00078at 84.247 kb on - strand, within MIT1002_00078at 84.247 kb on - strand, within MIT1002_00078at 84.249 kb on - strand, within MIT1002_00078at 84.290 kb on - strand, within MIT1002_00078at 84.320 kb on - strand, within MIT1002_00078at 84.353 kb on - strand, within MIT1002_00078at 84.353 kb on - strand, within MIT1002_00078at 84.394 kb on - strand, within MIT1002_00078at 84.459 kb on + strand, within MIT1002_00078at 84.475 kb on + strand, within MIT1002_00078at 84.476 kb on - strand, within MIT1002_00078at 84.627 kb on + strand, within MIT1002_00078at 84.639 kb on + strand, within MIT1002_00078at 84.670 kb on + strand, within MIT1002_00078at 84.678 kb on - strand, within MIT1002_00078at 84.678 kb on - strand, within MIT1002_00078at 84.732 kb on + strand, within MIT1002_00078at 84.732 kb on + strand, within MIT1002_00078at 84.750 kb on - strand, within MIT1002_00078at 84.756 kb on + strand, within MIT1002_00078at 84.801 kb on - strand, within MIT1002_00078at 84.801 kb on - strand, within MIT1002_00078at 84.910 kb on - strand, within MIT1002_00078at 84.914 kb on + strand, within MIT1002_00078at 85.002 kb on - strand, within MIT1002_00078at 85.023 kb on + strand, within MIT1002_00078at 85.031 kb on - strand, within MIT1002_00078at 85.201 kb on + strand, within MIT1002_00078at 85.201 kb on + strand, within MIT1002_00078at 85.233 kb on + strand, within MIT1002_00078at 85.233 kb on + strand, within MIT1002_00078at 85.259 kb on - strand, within MIT1002_00078at 85.279 kb on + strand, within MIT1002_00078at 85.290 kb on + strand, within MIT1002_00078at 85.350 kb on + strandat 85.360 kb on + strandat 85.388 kb on + strandat 85.418 kb on + strandat 85.463 kb on + strandat 85.463 kb on + strandat 85.463 kb on - strandat 85.471 kb on - strandat 85.582 kb on + strandat 85.679 kb on - strandat 85.912 kb on - strand, within MIT1002_00079at 85.913 kb on + strand, within MIT1002_00079at 85.987 kb on + strand, within MIT1002_00079at 85.997 kb on + strand, within MIT1002_00079at 85.997 kb on + strand, within MIT1002_00079at 86.051 kb on + strand, within MIT1002_00079at 86.051 kb on + strand, within MIT1002_00079at 86.106 kb on + strand, within MIT1002_00079at 86.114 kb on - strand, within MIT1002_00079at 86.120 kb on + strand, within MIT1002_00079at 86.125 kb on + strand, within MIT1002_00079at 86.131 kb on + strand, within MIT1002_00079at 86.131 kb on + strand, within MIT1002_00079at 86.131 kb on + strand, within MIT1002_00079at 86.133 kb on - strand, within MIT1002_00079at 86.133 kb on - strand, within MIT1002_00079at 86.139 kb on - strand, within MIT1002_00079at 86.235 kb on + strandat 86.247 kb on + strandat 86.263 kb on - strandat 86.290 kb on - strandat 86.297 kb on - strandat 86.307 kb on - strandat 86.350 kb on - strandat 86.352 kb on + strandat 86.386 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2
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82,780 + MIT1002_00077 0.41 -0.4
82,792 + MIT1002_00077 0.42 -2.0
82,792 + MIT1002_00077 0.42 -1.3
82,792 + MIT1002_00077 0.42 +0.0
82,792 + MIT1002_00077 0.42 +0.2
82,797 + MIT1002_00077 0.42 +0.4
82,800 - MIT1002_00077 0.43 -0.4
82,800 - MIT1002_00077 0.43 -0.0
82,800 - MIT1002_00077 0.43 -0.0
82,802 + MIT1002_00077 0.43 -2.7
82,802 + MIT1002_00077 0.43 -1.1
82,802 + MIT1002_00077 0.43 -1.0
82,802 + MIT1002_00077 0.43 +3.0
82,802 + MIT1002_00077 0.43 +1.1
82,802 + MIT1002_00077 0.43 +1.8
82,802 + MIT1002_00077 0.43 -1.7
82,805 - MIT1002_00077 0.43 +0.3
82,810 - MIT1002_00077 0.43 -0.9
82,810 - MIT1002_00077 0.43 -0.6
82,810 - MIT1002_00077 0.43 +0.5
82,810 - MIT1002_00077 0.43 -0.6
82,810 - MIT1002_00077 0.43 +0.7
82,810 - MIT1002_00077 0.43 +0.7
82,903 + MIT1002_00077 0.50 -0.4
82,908 + MIT1002_00077 0.50 +0.1
82,911 - MIT1002_00077 0.50 -1.2
82,911 - MIT1002_00077 0.50 -0.6
82,916 - MIT1002_00077 0.51 -2.1
82,920 + MIT1002_00077 0.51 -0.3
82,926 - MIT1002_00077 0.51 +0.3
82,926 - MIT1002_00077 0.51 +1.0
82,928 - MIT1002_00077 0.52 -2.3
82,950 + MIT1002_00077 0.53 -0.1
82,950 + MIT1002_00077 0.53 -2.1
82,998 + MIT1002_00077 0.57 -0.6
82,998 + MIT1002_00077 0.57 -1.7
83,006 - MIT1002_00077 0.57 -0.0
83,006 - MIT1002_00077 0.57 -0.5
83,006 - MIT1002_00077 0.57 +0.5
83,038 + MIT1002_00077 0.59 -0.5
83,046 - MIT1002_00077 0.60 +0.5
83,064 - MIT1002_00077 0.61 +1.0
83,147 - MIT1002_00077 0.67 -0.8
83,171 - MIT1002_00077 0.69 -1.6
83,182 + MIT1002_00077 0.70 -0.7
83,194 + MIT1002_00077 0.70 +1.3
83,199 + MIT1002_00077 0.71 +0.7
83,207 - MIT1002_00077 0.71 +1.5
83,207 - MIT1002_00077 0.71 -0.2
83,208 - MIT1002_00077 0.71 +0.9
83,214 - MIT1002_00077 0.72 -0.8
83,216 + MIT1002_00077 0.72 +0.2
83,267 + MIT1002_00077 0.76 -1.6
83,323 - MIT1002_00077 0.80 -0.3
83,371 + MIT1002_00077 0.83 -0.4
83,374 - MIT1002_00077 0.83 +0.4
83,376 - MIT1002_00077 0.83 +0.8
83,380 - MIT1002_00077 0.84 +0.3
83,382 - MIT1002_00077 0.84 -0.1
83,387 + MIT1002_00077 0.84 +0.7
83,387 + MIT1002_00077 0.84 +0.8
83,387 + MIT1002_00077 0.84 -0.6
83,387 + MIT1002_00077 0.84 -0.3
83,387 + MIT1002_00077 0.84 -1.4
83,387 + MIT1002_00077 0.84 -1.8
83,395 - MIT1002_00077 0.85 -0.7
83,395 - MIT1002_00077 0.85 -1.2
83,410 - MIT1002_00077 0.86 +1.4
83,466 + MIT1002_00077 0.90 -0.5
83,478 + +0.1
83,484 - -0.5
83,501 + +0.1
83,503 - +1.5
83,548 - +0.1
83,550 - -0.1
83,557 + -0.6
83,565 - +0.2
83,606 + +0.4
83,614 - -0.1
83,616 + -1.2
83,624 - -2.6
83,624 - +0.5
83,624 - -0.5
83,625 - +0.7
83,743 + +0.4
83,858 + -0.5
83,876 - +1.0
83,940 + MIT1002_00078 0.13 -0.6
83,947 + MIT1002_00078 0.13 -0.2
83,998 + MIT1002_00078 0.16 +1.8
84,089 + MIT1002_00078 0.21 -1.4
84,094 + MIT1002_00078 0.21 +0.1
84,099 + MIT1002_00078 0.22 -0.7
84,106 + MIT1002_00078 0.22 +0.3
84,112 - MIT1002_00078 0.22 -2.3
84,114 - MIT1002_00078 0.23 +1.2
84,176 - MIT1002_00078 0.26 +1.5
84,237 - MIT1002_00078 0.29 -0.8
84,247 - MIT1002_00078 0.30 +0.1
84,247 - MIT1002_00078 0.30 -0.1
84,249 - MIT1002_00078 0.30 +0.8
84,290 - MIT1002_00078 0.32 -0.6
84,320 - MIT1002_00078 0.34 -1.2
84,353 - MIT1002_00078 0.36 +0.4
84,353 - MIT1002_00078 0.36 +1.9
84,394 - MIT1002_00078 0.38 +1.1
84,459 + MIT1002_00078 0.42 +1.1
84,475 + MIT1002_00078 0.43 -1.4
84,476 - MIT1002_00078 0.43 -0.5
84,627 + MIT1002_00078 0.52 +0.4
84,639 + MIT1002_00078 0.52 -0.0
84,670 + MIT1002_00078 0.54 -0.4
84,678 - MIT1002_00078 0.54 -0.3
84,678 - MIT1002_00078 0.54 -0.1
84,732 + MIT1002_00078 0.57 -0.8
84,732 + MIT1002_00078 0.57 +0.4
84,750 - MIT1002_00078 0.58 -0.4
84,756 + MIT1002_00078 0.59 -1.1
84,801 - MIT1002_00078 0.61 +1.2
84,801 - MIT1002_00078 0.61 +0.0
84,910 - MIT1002_00078 0.68 +0.8
84,914 + MIT1002_00078 0.68 +0.1
85,002 - MIT1002_00078 0.73 -0.9
85,023 + MIT1002_00078 0.74 +0.1
85,031 - MIT1002_00078 0.74 -2.4
85,201 + MIT1002_00078 0.84 +1.5
85,201 + MIT1002_00078 0.84 -0.9
85,233 + MIT1002_00078 0.86 -0.4
85,233 + MIT1002_00078 0.86 -1.2
85,259 - MIT1002_00078 0.87 -0.9
85,279 + MIT1002_00078 0.88 -0.1
85,290 + MIT1002_00078 0.89 +0.3
85,350 + -0.4
85,360 + -1.6
85,388 + +0.3
85,418 + -0.4
85,463 + -1.5
85,463 + -0.7
85,463 - +0.1
85,471 - -0.2
85,582 + +0.5
85,679 - -0.7
85,912 - MIT1002_00079 0.46 +0.1
85,913 + MIT1002_00079 0.46 +0.0
85,987 + MIT1002_00079 0.58 +0.3
85,997 + MIT1002_00079 0.59 +0.3
85,997 + MIT1002_00079 0.59 -0.3
86,051 + MIT1002_00079 0.68 -0.2
86,051 + MIT1002_00079 0.68 -1.5
86,106 + MIT1002_00079 0.77 -1.0
86,114 - MIT1002_00079 0.78 -0.7
86,120 + MIT1002_00079 0.79 +0.2
86,125 + MIT1002_00079 0.80 -0.9
86,131 + MIT1002_00079 0.80 +0.1
86,131 + MIT1002_00079 0.80 +1.3
86,131 + MIT1002_00079 0.80 +0.2
86,133 - MIT1002_00079 0.81 -0.2
86,133 - MIT1002_00079 0.81 +0.3
86,139 - MIT1002_00079 0.82 -1.9
86,235 + -0.8
86,247 + -0.2
86,263 - +0.1
86,290 - +1.1
86,297 - -0.3
86,307 - +1.1
86,350 - +0.4
86,352 + +0.8
86,386 + +0.4

Or see this region's nucleotide sequence