Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00044

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00042 and MIT1002_00043 are separated by 247 nucleotidesMIT1002_00043 and MIT1002_00044 are separated by 2 nucleotidesMIT1002_00044 and MIT1002_00045 are separated by 38 nucleotidesMIT1002_00045 and MIT1002_00046 are separated by 218 nucleotides MIT1002_00042: MIT1002_00042 - SOS cell division inhibitor, at 47,877 to 48,626 _00042 MIT1002_00043: MIT1002_00043 - hypothetical protein, at 48,874 to 49,383 _00043 MIT1002_00044: MIT1002_00044 - hypothetical protein, at 49,386 to 51,137 _00044 MIT1002_00045: MIT1002_00045 - hypothetical protein, at 51,176 to 51,511 _00045 MIT1002_00046: MIT1002_00046 - Bacterial leucyl aminopeptidase precursor, at 51,730 to 53,337 _00046 Position (kb) 49 50 51 52Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 48.415 kb on - strand, within MIT1002_00042at 48.485 kb on - strand, within MIT1002_00042at 48.571 kb on + strandat 48.665 kb on - strandat 48.670 kb on + strandat 48.678 kb on - strandat 48.679 kb on - strandat 48.787 kb on - strandat 48.793 kb on - strandat 48.811 kb on + strandat 48.823 kb on + strandat 48.831 kb on - strandat 48.838 kb on - strandat 48.848 kb on - strandat 48.905 kb on + strandat 48.979 kb on + strand, within MIT1002_00043at 49.012 kb on - strand, within MIT1002_00043at 49.063 kb on - strand, within MIT1002_00043at 49.142 kb on + strand, within MIT1002_00043at 49.238 kb on - strand, within MIT1002_00043at 49.270 kb on - strand, within MIT1002_00043at 49.351 kb on + strandat 49.365 kb on + strandat 49.391 kb on - strandat 49.445 kb on + strandat 49.477 kb on + strandat 49.487 kb on + strandat 49.487 kb on + strandat 49.487 kb on + strandat 49.495 kb on - strandat 49.566 kb on + strand, within MIT1002_00044at 49.566 kb on + strand, within MIT1002_00044at 49.566 kb on + strand, within MIT1002_00044at 49.568 kb on - strand, within MIT1002_00044at 49.574 kb on - strand, within MIT1002_00044at 49.665 kb on + strand, within MIT1002_00044at 49.665 kb on + strand, within MIT1002_00044at 49.700 kb on - strand, within MIT1002_00044at 49.735 kb on + strand, within MIT1002_00044at 49.794 kb on + strand, within MIT1002_00044at 49.794 kb on + strand, within MIT1002_00044at 49.802 kb on - strand, within MIT1002_00044at 49.809 kb on - strand, within MIT1002_00044at 49.896 kb on + strand, within MIT1002_00044at 49.898 kb on + strand, within MIT1002_00044at 49.903 kb on + strand, within MIT1002_00044at 49.928 kb on - strand, within MIT1002_00044at 50.007 kb on - strand, within MIT1002_00044at 50.048 kb on - strand, within MIT1002_00044at 50.051 kb on + strand, within MIT1002_00044at 50.066 kb on - strand, within MIT1002_00044at 50.317 kb on + strand, within MIT1002_00044at 50.317 kb on + strand, within MIT1002_00044at 50.325 kb on - strand, within MIT1002_00044at 50.338 kb on + strand, within MIT1002_00044at 50.340 kb on - strand, within MIT1002_00044at 50.367 kb on - strand, within MIT1002_00044at 50.454 kb on + strand, within MIT1002_00044at 50.462 kb on - strand, within MIT1002_00044at 50.472 kb on - strand, within MIT1002_00044at 50.472 kb on - strand, within MIT1002_00044at 50.503 kb on + strand, within MIT1002_00044at 50.567 kb on + strand, within MIT1002_00044at 50.576 kb on - strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.605 kb on + strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.613 kb on - strand, within MIT1002_00044at 50.623 kb on - strand, within MIT1002_00044at 50.671 kb on + strand, within MIT1002_00044at 50.673 kb on - strand, within MIT1002_00044at 50.758 kb on - strand, within MIT1002_00044at 50.766 kb on + strand, within MIT1002_00044at 50.865 kb on - strand, within MIT1002_00044at 50.865 kb on - strand, within MIT1002_00044at 50.869 kb on + strand, within MIT1002_00044at 50.902 kb on - strand, within MIT1002_00044at 50.903 kb on - strand, within MIT1002_00044at 50.904 kb on + strand, within MIT1002_00044at 50.990 kb on - strandat 51.040 kb on - strandat 51.048 kb on - strandat 51.078 kb on - strandat 51.088 kb on + strandat 51.134 kb on + strandat 51.134 kb on + strandat 51.142 kb on - strandat 51.142 kb on - strandat 51.206 kb on + strandat 51.430 kb on + strand, within MIT1002_00045at 51.430 kb on + strand, within MIT1002_00045at 51.438 kb on - strand, within MIT1002_00045at 51.438 kb on - strand, within MIT1002_00045at 51.545 kb on + strandat 51.631 kb on - strandat 51.641 kb on - strandat 51.641 kb on - strandat 51.669 kb on + strandat 51.679 kb on + strandat 51.743 kb on + strandat 51.757 kb on + strandat 51.757 kb on + strandat 51.765 kb on - strandat 51.765 kb on - strandat 51.765 kb on - strandat 51.765 kb on - strandat 51.896 kb on - strand, within MIT1002_00046at 52.048 kb on - strand, within MIT1002_00046at 52.058 kb on - strand, within MIT1002_00046at 52.069 kb on - strand, within MIT1002_00046at 52.122 kb on - strand, within MIT1002_00046

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 2
remove
48,415 - MIT1002_00042 0.72 -0.7
48,485 - MIT1002_00042 0.81 -2.8
48,571 + +0.5
48,665 - -0.1
48,670 + +0.1
48,678 - +0.7
48,679 - -1.4
48,787 - +0.7
48,793 - -1.2
48,811 + +1.8
48,823 + +1.0
48,831 - +1.7
48,838 - -0.9
48,848 - -0.0
48,905 + -0.4
48,979 + MIT1002_00043 0.21 +0.1
49,012 - MIT1002_00043 0.27 -0.8
49,063 - MIT1002_00043 0.37 -0.6
49,142 + MIT1002_00043 0.53 +1.6
49,238 - MIT1002_00043 0.71 -1.3
49,270 - MIT1002_00043 0.78 -0.6
49,351 + +1.2
49,365 + -1.1
49,391 - -0.7
49,445 + +0.1
49,477 + -0.9
49,487 + +1.6
49,487 + -0.4
49,487 + +0.3
49,495 - -1.7
49,566 + MIT1002_00044 0.10 +0.4
49,566 + MIT1002_00044 0.10 -0.7
49,566 + MIT1002_00044 0.10 +0.1
49,568 - MIT1002_00044 0.10 -0.0
49,574 - MIT1002_00044 0.11 -1.1
49,665 + MIT1002_00044 0.16 -1.6
49,665 + MIT1002_00044 0.16 +1.7
49,700 - MIT1002_00044 0.18 +0.0
49,735 + MIT1002_00044 0.20 -2.2
49,794 + MIT1002_00044 0.23 -1.0
49,794 + MIT1002_00044 0.23 -0.5
49,802 - MIT1002_00044 0.24 -0.0
49,809 - MIT1002_00044 0.24 +1.4
49,896 + MIT1002_00044 0.29 +0.0
49,898 + MIT1002_00044 0.29 -0.1
49,903 + MIT1002_00044 0.30 -0.2
49,928 - MIT1002_00044 0.31 -1.4
50,007 - MIT1002_00044 0.35 +1.0
50,048 - MIT1002_00044 0.38 +1.2
50,051 + MIT1002_00044 0.38 +1.1
50,066 - MIT1002_00044 0.39 -0.2
50,317 + MIT1002_00044 0.53 -0.3
50,317 + MIT1002_00044 0.53 -0.3
50,325 - MIT1002_00044 0.54 -1.2
50,338 + MIT1002_00044 0.54 -0.3
50,340 - MIT1002_00044 0.54 +0.4
50,367 - MIT1002_00044 0.56 +0.2
50,454 + MIT1002_00044 0.61 +0.0
50,462 - MIT1002_00044 0.61 -0.7
50,472 - MIT1002_00044 0.62 +0.2
50,472 - MIT1002_00044 0.62 -0.3
50,503 + MIT1002_00044 0.64 -2.4
50,567 + MIT1002_00044 0.67 -1.7
50,576 - MIT1002_00044 0.68 +0.2
50,605 + MIT1002_00044 0.70 +0.3
50,605 + MIT1002_00044 0.70 +0.5
50,605 + MIT1002_00044 0.70 -0.6
50,605 + MIT1002_00044 0.70 -4.0
50,605 + MIT1002_00044 0.70 +0.2
50,605 + MIT1002_00044 0.70 -0.6
50,605 + MIT1002_00044 0.70 +0.3
50,605 + MIT1002_00044 0.70 +0.9
50,605 + MIT1002_00044 0.70 -0.7
50,605 + MIT1002_00044 0.70 +0.1
50,605 + MIT1002_00044 0.70 +2.0
50,605 + MIT1002_00044 0.70 +1.4
50,605 + MIT1002_00044 0.70 -0.2
50,605 + MIT1002_00044 0.70 -1.7
50,605 + MIT1002_00044 0.70 -0.2
50,605 + MIT1002_00044 0.70 +1.6
50,605 + MIT1002_00044 0.70 -0.1
50,605 + MIT1002_00044 0.70 +1.3
50,605 + MIT1002_00044 0.70 +0.6
50,605 + MIT1002_00044 0.70 -2.5
50,613 - MIT1002_00044 0.70 -0.8
50,613 - MIT1002_00044 0.70 -0.3
50,613 - MIT1002_00044 0.70 +1.1
50,613 - MIT1002_00044 0.70 +2.3
50,613 - MIT1002_00044 0.70 -1.2
50,613 - MIT1002_00044 0.70 +0.3
50,613 - MIT1002_00044 0.70 -0.1
50,613 - MIT1002_00044 0.70 +0.6
50,613 - MIT1002_00044 0.70 +0.3
50,613 - MIT1002_00044 0.70 -0.8
50,613 - MIT1002_00044 0.70 +0.3
50,613 - MIT1002_00044 0.70 +0.4
50,613 - MIT1002_00044 0.70 -0.3
50,613 - MIT1002_00044 0.70 +0.1
50,613 - MIT1002_00044 0.70 +0.9
50,613 - MIT1002_00044 0.70 +0.0
50,613 - MIT1002_00044 0.70 +0.9
50,613 - MIT1002_00044 0.70 +0.4
50,613 - MIT1002_00044 0.70 -0.9
50,613 - MIT1002_00044 0.70 +0.7
50,623 - MIT1002_00044 0.71 -0.0
50,671 + MIT1002_00044 0.73 -0.8
50,673 - MIT1002_00044 0.73 -0.4
50,758 - MIT1002_00044 0.78 -0.0
50,766 + MIT1002_00044 0.79 -0.9
50,865 - MIT1002_00044 0.84 +1.7
50,865 - MIT1002_00044 0.84 -0.2
50,869 + MIT1002_00044 0.85 -2.5
50,902 - MIT1002_00044 0.87 -1.1
50,903 - MIT1002_00044 0.87 +1.5
50,904 + MIT1002_00044 0.87 +1.3
50,990 - -1.1
51,040 - -0.1
51,048 - -0.1
51,078 - +0.1
51,088 + -0.2
51,134 + -0.1
51,134 + +0.4
51,142 - -0.4
51,142 - -0.3
51,206 + +0.7
51,430 + MIT1002_00045 0.76 -0.1
51,430 + MIT1002_00045 0.76 -1.7
51,438 - MIT1002_00045 0.78 +1.4
51,438 - MIT1002_00045 0.78 +0.2
51,545 + +1.5
51,631 - -2.4
51,641 - -0.0
51,641 - -0.1
51,669 + +0.6
51,679 + +0.8
51,743 + -0.2
51,757 + -2.8
51,757 + -0.1
51,765 - +0.2
51,765 - +1.4
51,765 - -1.9
51,765 - -0.0
51,896 - MIT1002_00046 0.10 -0.0
52,048 - MIT1002_00046 0.20 -0.9
52,058 - MIT1002_00046 0.20 -0.1
52,069 - MIT1002_00046 0.21 -1.6
52,122 - MIT1002_00046 0.24 -2.4

Or see this region's nucleotide sequence