Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18605 and LRK53_RS18610 are separated by 25 nucleotides LRK53_RS18610 and LRK53_RS18615 are separated by 8 nucleotides
LRK53_RS18605: LRK53_RS18605 - HAMP domain-containing histidine kinase, at 102,510 to 103,718
_RS18605
LRK53_RS18610: LRK53_RS18610 - response regulator transcription factor, at 103,744 to 104,421
_RS18610
LRK53_RS18615: LRK53_RS18615 - efflux RND transporter permease subunit, at 104,430 to 107,564
_RS18615
Position (kb) 103
104
105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 102.760 kb on - strand, within LRK53_RS18605 at 102.953 kb on + strand, within LRK53_RS18605 at 102.954 kb on - strand, within LRK53_RS18605 at 103.023 kb on + strand, within LRK53_RS18605 at 103.024 kb on - strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.319 kb on + strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.320 kb on - strand, within LRK53_RS18605 at 103.323 kb on + strand, within LRK53_RS18605 at 103.323 kb on + strand, within LRK53_RS18605 at 103.323 kb on + strand, within LRK53_RS18605 at 103.399 kb on + strand, within LRK53_RS18605 at 103.399 kb on + strand, within LRK53_RS18605 at 103.399 kb on + strand, within LRK53_RS18605 at 103.400 kb on - strand, within LRK53_RS18605 at 103.400 kb on - strand, within LRK53_RS18605 at 103.400 kb on - strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.435 kb on + strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.436 kb on - strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.464 kb on + strand, within LRK53_RS18605 at 103.465 kb on - strand, within LRK53_RS18605 at 103.465 kb on - strand, within LRK53_RS18605 at 103.465 kb on - strand, within LRK53_RS18605 at 103.465 kb on - strand, within LRK53_RS18605 at 103.465 kb on - strand, within LRK53_RS18605 at 103.465 kb on - strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.534 kb on + strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.535 kb on - strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.540 kb on + strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.541 kb on - strand, within LRK53_RS18605 at 103.568 kb on + strand, within LRK53_RS18605 at 103.568 kb on + strand, within LRK53_RS18605 at 103.568 kb on + strand, within LRK53_RS18605 at 103.568 kb on + strand, within LRK53_RS18605 at 103.745 kb on + strand at 103.791 kb on + strand at 103.792 kb on - strand at 103.888 kb on + strand, within LRK53_RS18610 at 103.889 kb on - strand, within LRK53_RS18610 at 103.889 kb on - strand, within LRK53_RS18610 at 103.889 kb on - strand, within LRK53_RS18610 at 104.022 kb on - strand, within LRK53_RS18610 at 104.129 kb on + strand, within LRK53_RS18610 at 104.130 kb on - strand, within LRK53_RS18610 at 104.130 kb on - strand, within LRK53_RS18610 at 104.322 kb on + strand, within LRK53_RS18610 at 104.366 kb on + strand at 104.398 kb on - strand at 104.729 kb on - strand at 104.729 kb on - strand at 104.835 kb on + strand, within LRK53_RS18615 at 104.836 kb on - strand, within LRK53_RS18615 at 105.007 kb on + strand, within LRK53_RS18615 at 105.007 kb on + strand, within LRK53_RS18615 at 105.007 kb on + strand, within LRK53_RS18615 at 105.008 kb on - strand, within LRK53_RS18615 at 105.008 kb on - strand, within LRK53_RS18615 at 105.008 kb on - strand, within LRK53_RS18615 at 105.140 kb on - strand, within LRK53_RS18615 at 105.158 kb on - strand, within LRK53_RS18615 at 105.158 kb on - strand, within LRK53_RS18615 at 105.158 kb on - strand, within LRK53_RS18615 at 105.158 kb on - strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.187 kb on + strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.188 kb on - strand, within LRK53_RS18615 at 105.293 kb on - strand, within LRK53_RS18615 at 105.393 kb on + strand, within LRK53_RS18615 at 105.393 kb on + strand, within LRK53_RS18615 at 105.394 kb on - strand, within LRK53_RS18615 at 105.394 kb on - strand, within LRK53_RS18615 at 105.394 kb on - strand, within LRK53_RS18615
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 102,760 - LRK53_RS18605 0.21 -1.4 102,953 + LRK53_RS18605 0.37 -3.1 102,954 - LRK53_RS18605 0.37 -2.0 103,023 + LRK53_RS18605 0.42 -1.7 103,024 - LRK53_RS18605 0.43 +0.9 103,319 + LRK53_RS18605 0.67 -1.9 103,319 + LRK53_RS18605 0.67 -1.1 103,319 + LRK53_RS18605 0.67 -0.9 103,319 + LRK53_RS18605 0.67 +0.3 103,319 + LRK53_RS18605 0.67 +0.1 103,320 - LRK53_RS18605 0.67 -1.4 103,320 - LRK53_RS18605 0.67 -1.2 103,320 - LRK53_RS18605 0.67 -2.9 103,320 - LRK53_RS18605 0.67 -0.5 103,323 + LRK53_RS18605 0.67 -1.2 103,323 + LRK53_RS18605 0.67 +0.2 103,323 + LRK53_RS18605 0.67 -0.4 103,399 + LRK53_RS18605 0.74 -0.6 103,399 + LRK53_RS18605 0.74 -2.8 103,399 + LRK53_RS18605 0.74 -0.7 103,400 - LRK53_RS18605 0.74 -1.4 103,400 - LRK53_RS18605 0.74 -1.7 103,400 - LRK53_RS18605 0.74 -1.8 103,435 + LRK53_RS18605 0.77 +0.3 103,435 + LRK53_RS18605 0.77 -0.1 103,435 + LRK53_RS18605 0.77 -0.1 103,435 + LRK53_RS18605 0.77 -1.1 103,435 + LRK53_RS18605 0.77 -1.5 103,435 + LRK53_RS18605 0.77 -2.4 103,435 + LRK53_RS18605 0.77 -1.1 103,435 + LRK53_RS18605 0.77 -1.3 103,436 - LRK53_RS18605 0.77 +0.3 103,436 - LRK53_RS18605 0.77 -0.1 103,436 - LRK53_RS18605 0.77 +0.9 103,436 - LRK53_RS18605 0.77 +0.7 103,436 - LRK53_RS18605 0.77 +0.2 103,436 - LRK53_RS18605 0.77 -0.7 103,436 - LRK53_RS18605 0.77 -0.3 103,436 - LRK53_RS18605 0.77 -1.8 103,436 - LRK53_RS18605 0.77 +0.3 103,464 + LRK53_RS18605 0.79 +3.4 103,464 + LRK53_RS18605 0.79 -1.2 103,464 + LRK53_RS18605 0.79 -1.1 103,464 + LRK53_RS18605 0.79 -0.9 103,464 + LRK53_RS18605 0.79 -1.8 103,464 + LRK53_RS18605 0.79 +0.1 103,464 + LRK53_RS18605 0.79 -1.6 103,464 + LRK53_RS18605 0.79 +0.3 103,465 - LRK53_RS18605 0.79 -0.5 103,465 - LRK53_RS18605 0.79 -0.4 103,465 - LRK53_RS18605 0.79 -1.4 103,465 - LRK53_RS18605 0.79 +0.9 103,465 - LRK53_RS18605 0.79 -0.4 103,465 - LRK53_RS18605 0.79 -0.7 103,534 + LRK53_RS18605 0.85 -1.7 103,534 + LRK53_RS18605 0.85 +1.2 103,534 + LRK53_RS18605 0.85 -0.3 103,534 + LRK53_RS18605 0.85 +0.6 103,534 + LRK53_RS18605 0.85 -1.8 103,534 + LRK53_RS18605 0.85 -0.7 103,534 + LRK53_RS18605 0.85 -1.1 103,534 + LRK53_RS18605 0.85 -0.9 103,535 - LRK53_RS18605 0.85 +0.5 103,535 - LRK53_RS18605 0.85 -0.3 103,535 - LRK53_RS18605 0.85 -0.1 103,535 - LRK53_RS18605 0.85 -1.7 103,535 - LRK53_RS18605 0.85 -1.1 103,535 - LRK53_RS18605 0.85 -0.7 103,535 - LRK53_RS18605 0.85 +1.9 103,535 - LRK53_RS18605 0.85 -1.2 103,535 - LRK53_RS18605 0.85 -0.1 103,540 + LRK53_RS18605 0.85 +2.9 103,540 + LRK53_RS18605 0.85 -0.9 103,540 + LRK53_RS18605 0.85 -1.7 103,540 + LRK53_RS18605 0.85 -1.6 103,540 + LRK53_RS18605 0.85 -0.9 103,540 + LRK53_RS18605 0.85 -1.8 103,541 - LRK53_RS18605 0.85 -2.2 103,541 - LRK53_RS18605 0.85 -1.4 103,541 - LRK53_RS18605 0.85 -0.7 103,541 - LRK53_RS18605 0.85 -0.9 103,541 - LRK53_RS18605 0.85 -0.7 103,541 - LRK53_RS18605 0.85 -0.9 103,541 - LRK53_RS18605 0.85 +0.1 103,541 - LRK53_RS18605 0.85 -0.6 103,568 + LRK53_RS18605 0.88 -1.0 103,568 + LRK53_RS18605 0.88 -1.1 103,568 + LRK53_RS18605 0.88 -2.1 103,568 + LRK53_RS18605 0.88 -0.1 103,745 + +0.3 103,791 + -1.0 103,792 - -1.0 103,888 + LRK53_RS18610 0.21 -2.0 103,889 - LRK53_RS18610 0.21 -1.5 103,889 - LRK53_RS18610 0.21 -2.2 103,889 - LRK53_RS18610 0.21 -2.8 104,022 - LRK53_RS18610 0.41 -0.8 104,129 + LRK53_RS18610 0.57 -2.5 104,130 - LRK53_RS18610 0.57 -0.3 104,130 - LRK53_RS18610 0.57 -1.0 104,322 + LRK53_RS18610 0.85 -1.5 104,366 + -1.9 104,398 - +0.2 104,729 - +1.2 104,729 - -1.5 104,835 + LRK53_RS18615 0.13 -2.2 104,836 - LRK53_RS18615 0.13 -0.7 105,007 + LRK53_RS18615 0.18 -2.2 105,007 + LRK53_RS18615 0.18 -1.2 105,007 + LRK53_RS18615 0.18 -2.9 105,008 - LRK53_RS18615 0.18 -0.9 105,008 - LRK53_RS18615 0.18 +0.1 105,008 - LRK53_RS18615 0.18 -1.1 105,140 - LRK53_RS18615 0.23 -1.1 105,158 - LRK53_RS18615 0.23 -1.2 105,158 - LRK53_RS18615 0.23 -2.2 105,158 - LRK53_RS18615 0.23 +0.8 105,158 - LRK53_RS18615 0.23 -1.1 105,187 + LRK53_RS18615 0.24 -2.3 105,187 + LRK53_RS18615 0.24 -1.2 105,187 + LRK53_RS18615 0.24 -0.9 105,187 + LRK53_RS18615 0.24 -0.5 105,187 + LRK53_RS18615 0.24 -0.5 105,187 + LRK53_RS18615 0.24 -1.9 105,187 + LRK53_RS18615 0.24 +0.3 105,187 + LRK53_RS18615 0.24 -0.9 105,187 + LRK53_RS18615 0.24 +0.3 105,187 + LRK53_RS18615 0.24 +0.7 105,187 + LRK53_RS18615 0.24 -0.5 105,187 + LRK53_RS18615 0.24 -0.4 105,187 + LRK53_RS18615 0.24 -0.9 105,187 + LRK53_RS18615 0.24 +0.2 105,187 + LRK53_RS18615 0.24 -1.1 105,187 + LRK53_RS18615 0.24 +0.3 105,188 - LRK53_RS18615 0.24 +0.6 105,188 - LRK53_RS18615 0.24 -0.9 105,188 - LRK53_RS18615 0.24 -2.3 105,188 - LRK53_RS18615 0.24 -0.4 105,188 - LRK53_RS18615 0.24 -0.5 105,188 - LRK53_RS18615 0.24 -0.5 105,188 - LRK53_RS18615 0.24 +0.7 105,188 - LRK53_RS18615 0.24 -1.1 105,188 - LRK53_RS18615 0.24 -1.1 105,188 - LRK53_RS18615 0.24 -1.2 105,188 - LRK53_RS18615 0.24 -0.7 105,188 - LRK53_RS18615 0.24 -0.6 105,188 - LRK53_RS18615 0.24 -1.1 105,188 - LRK53_RS18615 0.24 -1.5 105,188 - LRK53_RS18615 0.24 -0.9 105,293 - LRK53_RS18615 0.28 +0.9 105,393 + LRK53_RS18615 0.31 -1.5 105,393 + LRK53_RS18615 0.31 -1.8 105,394 - LRK53_RS18615 0.31 +1.1 105,394 - LRK53_RS18615 0.31 +1.6 105,394 - LRK53_RS18615 0.31 -0.2
Or see this region's nucleotide sequence