Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18420 and LRK53_RS18425 are separated by 101 nucleotides LRK53_RS18425 and LRK53_RS18430 are separated by 97 nucleotides LRK53_RS18430 and LRK53_RS18435 are separated by 563 nucleotides
LRK53_RS18420: LRK53_RS18420 - hypothetical protein, at 59,210 to 59,743
_RS18420
LRK53_RS18425: LRK53_RS18425 - hypothetical protein, at 59,845 to 60,381
_RS18425
LRK53_RS18430: LRK53_RS18430 - hypothetical protein, at 60,479 to 61,420
_RS18430
LRK53_RS18435: LRK53_RS18435 - replicative DNA helicase, at 61,984 to 63,387
_RS18435
Position (kb) 60
61
62 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 59.499 kb on - strand, within LRK53_RS18420 at 59.570 kb on + strand, within LRK53_RS18420 at 59.654 kb on + strand, within LRK53_RS18420 at 59.654 kb on + strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.694 kb on + strand at 59.694 kb on + strand at 59.694 kb on + strand at 59.694 kb on + strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.773 kb on - strand at 59.955 kb on + strand, within LRK53_RS18425 at 59.955 kb on + strand, within LRK53_RS18425 at 59.956 kb on - strand, within LRK53_RS18425 at 59.956 kb on - strand, within LRK53_RS18425 at 59.978 kb on + strand, within LRK53_RS18425 at 60.005 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.425 kb on + strand at 60.426 kb on - strand at 60.593 kb on + strand, within LRK53_RS18430 at 60.593 kb on + strand, within LRK53_RS18430 at 60.594 kb on - strand, within LRK53_RS18430 at 60.594 kb on - strand, within LRK53_RS18430 at 60.671 kb on + strand, within LRK53_RS18430 at 60.671 kb on + strand, within LRK53_RS18430 at 60.671 kb on + strand, within LRK53_RS18430 at 60.672 kb on - strand, within LRK53_RS18430 at 60.897 kb on - strand, within LRK53_RS18430 at 61.076 kb on + strand, within LRK53_RS18430 at 61.206 kb on + strand, within LRK53_RS18430 at 61.206 kb on + strand, within LRK53_RS18430 at 61.250 kb on + strand, within LRK53_RS18430 at 61.250 kb on + strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.523 kb on + strand at 61.523 kb on + strand at 61.523 kb on + strand at 61.523 kb on + strand at 61.523 kb on + strand at 61.524 kb on - strand at 61.524 kb on - strand at 61.524 kb on - strand at 61.595 kb on - strand at 61.652 kb on + strand at 61.652 kb on + strand at 61.664 kb on + strand at 61.664 kb on + strand at 61.664 kb on + strand at 61.664 kb on + strand at 61.665 kb on - strand at 61.665 kb on - strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.720 kb on + strand at 61.721 kb on - strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.741 kb on + strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.742 kb on - strand at 61.832 kb on - strand at 61.832 kb on - strand at 62.017 kb on + strand at 62.018 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.053 kb on - strand at 62.115 kb on + strand at 62.149 kb on + strand, within LRK53_RS18435 at 62.278 kb on + strand, within LRK53_RS18435 at 62.278 kb on + strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.279 kb on - strand, within LRK53_RS18435 at 62.413 kb on + strand, within LRK53_RS18435 at 62.414 kb on - strand, within LRK53_RS18435
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 59,499 - LRK53_RS18420 0.54 -0.7 59,570 + LRK53_RS18420 0.67 -1.0 59,654 + LRK53_RS18420 0.83 -2.3 59,654 + LRK53_RS18420 0.83 +2.2 59,655 - LRK53_RS18420 0.83 -1.1 59,655 - LRK53_RS18420 0.83 +0.2 59,655 - LRK53_RS18420 0.83 -3.0 59,656 + LRK53_RS18420 0.84 -1.2 59,656 + LRK53_RS18420 0.84 +0.1 59,656 + LRK53_RS18420 0.84 +1.0 59,656 + LRK53_RS18420 0.84 +1.1 59,656 + LRK53_RS18420 0.84 -1.4 59,656 + LRK53_RS18420 0.84 -0.7 59,656 + LRK53_RS18420 0.84 -0.1 59,656 + LRK53_RS18420 0.84 -0.7 59,657 - LRK53_RS18420 0.84 -1.4 59,657 - LRK53_RS18420 0.84 +0.4 59,657 - LRK53_RS18420 0.84 -1.3 59,657 - LRK53_RS18420 0.84 -0.9 59,694 + -0.9 59,694 + -0.1 59,694 + +2.5 59,694 + -1.1 59,695 - +1.2 59,695 - +1.3 59,695 - -0.4 59,695 - -1.4 59,695 - +0.3 59,695 - -0.8 59,773 - -1.5 59,955 + LRK53_RS18425 0.20 -0.6 59,955 + LRK53_RS18425 0.20 -1.9 59,956 - LRK53_RS18425 0.21 -1.1 59,956 - LRK53_RS18425 0.21 -1.7 59,978 + LRK53_RS18425 0.25 -0.7 60,005 + LRK53_RS18425 0.30 -1.0 60,033 + LRK53_RS18425 0.35 -2.2 60,033 + LRK53_RS18425 0.35 +1.9 60,033 + LRK53_RS18425 0.35 -1.7 60,033 + LRK53_RS18425 0.35 +0.2 60,033 + LRK53_RS18425 0.35 +1.1 60,033 + LRK53_RS18425 0.35 -1.7 60,033 + LRK53_RS18425 0.35 -0.7 60,033 + LRK53_RS18425 0.35 -0.5 60,033 + LRK53_RS18425 0.35 -2.2 60,033 + LRK53_RS18425 0.35 +0.1 60,033 + LRK53_RS18425 0.35 -1.1 60,033 + LRK53_RS18425 0.35 -0.7 60,033 + LRK53_RS18425 0.35 -0.9 60,034 - LRK53_RS18425 0.35 +0.2 60,034 - LRK53_RS18425 0.35 -1.2 60,034 - LRK53_RS18425 0.35 +0.2 60,034 - LRK53_RS18425 0.35 +0.5 60,034 - LRK53_RS18425 0.35 -2.0 60,034 - LRK53_RS18425 0.35 -0.2 60,034 - LRK53_RS18425 0.35 +0.9 60,034 - LRK53_RS18425 0.35 +0.5 60,034 - LRK53_RS18425 0.35 +0.1 60,034 - LRK53_RS18425 0.35 -1.2 60,034 - LRK53_RS18425 0.35 -0.1 60,425 + -1.1 60,426 - -0.7 60,593 + LRK53_RS18430 0.12 -0.9 60,593 + LRK53_RS18430 0.12 +0.9 60,594 - LRK53_RS18430 0.12 -1.1 60,594 - LRK53_RS18430 0.12 +0.2 60,671 + LRK53_RS18430 0.20 -0.4 60,671 + LRK53_RS18430 0.20 -1.5 60,671 + LRK53_RS18430 0.20 +0.1 60,672 - LRK53_RS18430 0.20 -0.1 60,897 - LRK53_RS18430 0.44 -0.3 61,076 + LRK53_RS18430 0.63 -1.0 61,206 + LRK53_RS18430 0.77 +0.4 61,206 + LRK53_RS18430 0.77 -1.1 61,250 + LRK53_RS18430 0.82 -0.4 61,250 + LRK53_RS18430 0.82 -2.1 61,251 - LRK53_RS18430 0.82 +1.5 61,251 - LRK53_RS18430 0.82 +0.3 61,251 - LRK53_RS18430 0.82 +2.3 61,251 - LRK53_RS18430 0.82 -2.2 61,523 + +1.1 61,523 + -1.2 61,523 + +0.3 61,523 + -1.7 61,523 + -1.2 61,524 - -1.0 61,524 - -3.5 61,524 - -2.4 61,595 - -1.1 61,652 + -1.2 61,652 + -0.7 61,664 + +0.0 61,664 + +0.6 61,664 + -0.1 61,664 + -0.3 61,665 - +0.5 61,665 - -0.7 61,720 + -1.9 61,720 + +0.2 61,720 + -0.2 61,720 + +1.1 61,720 + -0.1 61,721 - -1.1 61,741 + -0.7 61,741 + +0.3 61,741 + -0.9 61,741 + -0.0 61,741 + -1.2 61,741 + -0.7 61,741 + -1.2 61,742 - +0.1 61,742 - -1.7 61,742 - -1.0 61,742 - -2.4 61,742 - -1.1 61,742 - -2.1 61,742 - -1.9 61,742 - +1.3 61,742 - +0.0 61,742 - +0.1 61,742 - -1.4 61,742 - +0.3 61,742 - -0.5 61,742 - -2.2 61,832 - -0.9 61,832 - -2.3 62,017 + +0.3 62,018 - +1.2 62,053 - -0.2 62,053 - +0.8 62,053 - -0.9 62,053 - +0.2 62,115 + -0.1 62,149 + LRK53_RS18435 0.12 +1.7 62,278 + LRK53_RS18435 0.21 -1.7 62,278 + LRK53_RS18435 0.21 -2.0 62,279 - LRK53_RS18435 0.21 -1.7 62,279 - LRK53_RS18435 0.21 -0.2 62,279 - LRK53_RS18435 0.21 -1.8 62,279 - LRK53_RS18435 0.21 -1.4 62,413 + LRK53_RS18435 0.31 +1.4 62,414 - LRK53_RS18435 0.31 +0.6
Or see this region's nucleotide sequence