Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00155 and LRK53_RS00160 are separated by 101 nucleotides LRK53_RS00160 and LRK53_RS00165 are separated by 103 nucleotides LRK53_RS00165 and LRK53_RS00170 overlap by 4 nucleotides
LRK53_RS00155: LRK53_RS00155 - GFA family protein, at 41,096 to 41,500
_RS00155
LRK53_RS00160: LRK53_RS00160 - YafY family transcriptional regulator, at 41,602 to 42,306
_RS00160
LRK53_RS00165: LRK53_RS00165 - chromosome partitioning protein ParB, at 42,410 to 43,024
_RS00165
LRK53_RS00170: LRK53_RS00170 - SulP family inorganic anion transporter, at 43,021 to 44,682
_RS00170
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 41.546 kb on + strand at 41.546 kb on + strand at 41.547 kb on - strand at 41.547 kb on - strand at 41.593 kb on + strand at 41.593 kb on + strand at 41.593 kb on + strand at 41.593 kb on + strand at 41.594 kb on - strand at 41.713 kb on + strand, within LRK53_RS00160 at 41.714 kb on - strand, within LRK53_RS00160 at 41.776 kb on + strand, within LRK53_RS00160 at 41.776 kb on + strand, within LRK53_RS00160 at 41.777 kb on - strand, within LRK53_RS00160 at 41.777 kb on - strand, within LRK53_RS00160 at 41.777 kb on - strand, within LRK53_RS00160 at 41.777 kb on - strand, within LRK53_RS00160 at 41.777 kb on - strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.971 kb on + strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.972 kb on - strand, within LRK53_RS00160 at 41.995 kb on + strand, within LRK53_RS00160 at 41.995 kb on + strand, within LRK53_RS00160 at 41.995 kb on + strand, within LRK53_RS00160 at 41.995 kb on + strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 41.996 kb on - strand, within LRK53_RS00160 at 42.070 kb on + strand, within LRK53_RS00160 at 42.070 kb on + strand, within LRK53_RS00160 at 42.070 kb on + strand, within LRK53_RS00160 at 42.070 kb on + strand, within LRK53_RS00160 at 42.071 kb on - strand, within LRK53_RS00160 at 42.071 kb on - strand, within LRK53_RS00160 at 42.265 kb on + strand at 42.265 kb on + strand at 42.265 kb on + strand at 42.265 kb on + strand at 42.266 kb on - strand at 42.266 kb on - strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.289 kb on + strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.290 kb on - strand at 42.304 kb on + strand at 42.304 kb on + strand at 42.304 kb on + strand at 42.304 kb on + strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.305 kb on - strand at 42.349 kb on - strand at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.599 kb on + strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.600 kb on - strand, within LRK53_RS00165 at 42.743 kb on + strand, within LRK53_RS00165 at 42.743 kb on + strand, within LRK53_RS00165 at 42.770 kb on + strand, within LRK53_RS00165 at 42.770 kb on + strand, within LRK53_RS00165 at 42.771 kb on - strand, within LRK53_RS00165 at 42.771 kb on - strand, within LRK53_RS00165 at 42.771 kb on - strand, within LRK53_RS00165 at 42.903 kb on - strand, within LRK53_RS00165 at 42.992 kb on + strand at 42.992 kb on + strand at 42.993 kb on - strand at 42.993 kb on - strand at 42.993 kb on - strand at 43.126 kb on + strand at 43.126 kb on + strand at 43.126 kb on + strand at 43.126 kb on + strand at 43.127 kb on - strand at 43.127 kb on - strand at 43.127 kb on - strand at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.691 kb on + strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.692 kb on - strand, within LRK53_RS00170 at 43.786 kb on + strand, within LRK53_RS00170 at 43.786 kb on + strand, within LRK53_RS00170 at 43.787 kb on - strand, within LRK53_RS00170 at 43.787 kb on - strand, within LRK53_RS00170 at 43.787 kb on - strand, within LRK53_RS00170 at 43.787 kb on - strand, within LRK53_RS00170 at 43.787 kb on - strand, within LRK53_RS00170 at 43.798 kb on + strand, within LRK53_RS00170 at 43.798 kb on + strand, within LRK53_RS00170 at 43.798 kb on + strand, within LRK53_RS00170 at 43.798 kb on + strand, within LRK53_RS00170 at 43.798 kb on + strand, within LRK53_RS00170 at 43.799 kb on - strand, within LRK53_RS00170 at 43.799 kb on - strand, within LRK53_RS00170 at 43.881 kb on + strand, within LRK53_RS00170 at 43.881 kb on + strand, within LRK53_RS00170 at 43.882 kb on - strand, within LRK53_RS00170
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 41,546 + -1.6 41,546 + +1.4 41,547 - -0.6 41,547 - -2.6 41,593 + -1.1 41,593 + -0.0 41,593 + +0.4 41,593 + +0.2 41,594 - -2.1 41,713 + LRK53_RS00160 0.16 -0.8 41,714 - LRK53_RS00160 0.16 -0.5 41,776 + LRK53_RS00160 0.25 -0.0 41,776 + LRK53_RS00160 0.25 +1.4 41,777 - LRK53_RS00160 0.25 -0.3 41,777 - LRK53_RS00160 0.25 -0.3 41,777 - LRK53_RS00160 0.25 -1.3 41,777 - LRK53_RS00160 0.25 -1.6 41,777 - LRK53_RS00160 0.25 -1.0 41,971 + LRK53_RS00160 0.52 -0.1 41,971 + LRK53_RS00160 0.52 +0.2 41,971 + LRK53_RS00160 0.52 -1.5 41,971 + LRK53_RS00160 0.52 -1.7 41,971 + LRK53_RS00160 0.52 -1.3 41,971 + LRK53_RS00160 0.52 -1.6 41,972 - LRK53_RS00160 0.52 -0.3 41,972 - LRK53_RS00160 0.52 -1.7 41,972 - LRK53_RS00160 0.52 -1.2 41,972 - LRK53_RS00160 0.52 -2.1 41,972 - LRK53_RS00160 0.52 +0.2 41,972 - LRK53_RS00160 0.52 -0.9 41,995 + LRK53_RS00160 0.56 +0.0 41,995 + LRK53_RS00160 0.56 +0.3 41,995 + LRK53_RS00160 0.56 -1.2 41,995 + LRK53_RS00160 0.56 +2.5 41,996 - LRK53_RS00160 0.56 -1.7 41,996 - LRK53_RS00160 0.56 -0.5 41,996 - LRK53_RS00160 0.56 +3.0 41,996 - LRK53_RS00160 0.56 -0.8 41,996 - LRK53_RS00160 0.56 +0.5 41,996 - LRK53_RS00160 0.56 +1.2 42,070 + LRK53_RS00160 0.66 +1.4 42,070 + LRK53_RS00160 0.66 +0.7 42,070 + LRK53_RS00160 0.66 -0.9 42,070 + LRK53_RS00160 0.66 -2.0 42,071 - LRK53_RS00160 0.67 -0.8 42,071 - LRK53_RS00160 0.67 -1.0 42,265 + +1.2 42,265 + +0.5 42,265 + -0.3 42,265 + +0.4 42,266 - -0.2 42,266 - +0.1 42,289 + +0.2 42,289 + -2.1 42,289 + -0.0 42,289 + -0.6 42,289 + -0.5 42,289 + -1.0 42,289 + -0.3 42,290 - -2.2 42,290 - -1.9 42,290 - -1.1 42,290 - -0.7 42,290 - -1.7 42,290 - -0.5 42,290 - +0.2 42,304 + -2.4 42,304 + -1.0 42,304 + +1.4 42,304 + -1.0 42,305 - -1.4 42,305 - -1.1 42,305 - +1.2 42,305 - +1.2 42,305 - -1.3 42,349 - -0.7 42,599 + LRK53_RS00165 0.31 -0.2 42,599 + LRK53_RS00165 0.31 -1.7 42,599 + LRK53_RS00165 0.31 +1.0 42,599 + LRK53_RS00165 0.31 -0.6 42,599 + LRK53_RS00165 0.31 -1.4 42,599 + LRK53_RS00165 0.31 -1.0 42,599 + LRK53_RS00165 0.31 -2.1 42,599 + LRK53_RS00165 0.31 +0.1 42,599 + LRK53_RS00165 0.31 -2.7 42,600 - LRK53_RS00165 0.31 -2.2 42,600 - LRK53_RS00165 0.31 -0.0 42,600 - LRK53_RS00165 0.31 -2.1 42,600 - LRK53_RS00165 0.31 +0.4 42,600 - LRK53_RS00165 0.31 -0.6 42,600 - LRK53_RS00165 0.31 +0.0 42,600 - LRK53_RS00165 0.31 +0.1 42,600 - LRK53_RS00165 0.31 -0.4 42,600 - LRK53_RS00165 0.31 -1.7 42,600 - LRK53_RS00165 0.31 -1.6 42,743 + LRK53_RS00165 0.54 -1.1 42,743 + LRK53_RS00165 0.54 +0.1 42,770 + LRK53_RS00165 0.59 -0.8 42,770 + LRK53_RS00165 0.59 -1.6 42,771 - LRK53_RS00165 0.59 -0.8 42,771 - LRK53_RS00165 0.59 -0.2 42,771 - LRK53_RS00165 0.59 -0.2 42,903 - LRK53_RS00165 0.80 -0.9 42,992 + -1.0 42,992 + +0.2 42,993 - -1.0 42,993 - -0.1 42,993 - -1.3 43,126 + -0.5 43,126 + +2.5 43,126 + -1.0 43,126 + -2.2 43,127 - +0.7 43,127 - -0.9 43,127 - -1.1 43,691 + LRK53_RS00170 0.40 -0.5 43,691 + LRK53_RS00170 0.40 -0.2 43,691 + LRK53_RS00170 0.40 -1.6 43,691 + LRK53_RS00170 0.40 -0.9 43,691 + LRK53_RS00170 0.40 +1.0 43,691 + LRK53_RS00170 0.40 -1.0 43,691 + LRK53_RS00170 0.40 -2.2 43,691 + LRK53_RS00170 0.40 -0.7 43,691 + LRK53_RS00170 0.40 -2.9 43,692 - LRK53_RS00170 0.40 +3.2 43,692 - LRK53_RS00170 0.40 -0.9 43,692 - LRK53_RS00170 0.40 -3.1 43,692 - LRK53_RS00170 0.40 -0.6 43,692 - LRK53_RS00170 0.40 -0.4 43,692 - LRK53_RS00170 0.40 -1.1 43,692 - LRK53_RS00170 0.40 -1.2 43,692 - LRK53_RS00170 0.40 -1.8 43,692 - LRK53_RS00170 0.40 -0.6 43,692 - LRK53_RS00170 0.40 -0.1 43,692 - LRK53_RS00170 0.40 +0.3 43,692 - LRK53_RS00170 0.40 -1.6 43,692 - LRK53_RS00170 0.40 -0.5 43,692 - LRK53_RS00170 0.40 -0.2 43,692 - LRK53_RS00170 0.40 +0.2 43,692 - LRK53_RS00170 0.40 -1.6 43,692 - LRK53_RS00170 0.40 -1.5 43,692 - LRK53_RS00170 0.40 -2.3 43,786 + LRK53_RS00170 0.46 -1.1 43,786 + LRK53_RS00170 0.46 -0.9 43,787 - LRK53_RS00170 0.46 -3.0 43,787 - LRK53_RS00170 0.46 -0.8 43,787 - LRK53_RS00170 0.46 -0.0 43,787 - LRK53_RS00170 0.46 +0.5 43,787 - LRK53_RS00170 0.46 -1.3 43,798 + LRK53_RS00170 0.47 +1.3 43,798 + LRK53_RS00170 0.47 +0.2 43,798 + LRK53_RS00170 0.47 -0.7 43,798 + LRK53_RS00170 0.47 +0.7 43,798 + LRK53_RS00170 0.47 -0.4 43,799 - LRK53_RS00170 0.47 -0.6 43,799 - LRK53_RS00170 0.47 -1.3 43,881 + LRK53_RS00170 0.52 +0.8 43,881 + LRK53_RS00170 0.52 +0.7 43,882 - LRK53_RS00170 0.52 -1.0
Or see this region's nucleotide sequence