Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00090 and LRK53_RS00095 are separated by 127 nucleotides LRK53_RS00095 and LRK53_RS00100 are separated by 318 nucleotides
LRK53_RS00090: LRK53_RS00090 - MFS transporter, at 26,790 to 28,460
_RS00090
LRK53_RS00095: LRK53_RS00095 - AMP-binding protein, at 28,588 to 30,261
_RS00095
LRK53_RS00100: LRK53_RS00100 - IS110 family transposase, at 30,580 to 31,491
_RS00100
Position (kb) 28
29
30
31 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 27.588 kb on + strand, within LRK53_RS00090 at 27.588 kb on + strand, within LRK53_RS00090 at 27.603 kb on + strand, within LRK53_RS00090 at 27.603 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.612 kb on + strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.613 kb on - strand, within LRK53_RS00090 at 27.734 kb on + strand, within LRK53_RS00090 at 27.735 kb on - strand, within LRK53_RS00090 at 27.777 kb on + strand, within LRK53_RS00090 at 27.777 kb on + strand, within LRK53_RS00090 at 27.777 kb on + strand, within LRK53_RS00090 at 27.777 kb on + strand, within LRK53_RS00090 at 27.778 kb on - strand, within LRK53_RS00090 at 27.778 kb on - strand, within LRK53_RS00090 at 27.778 kb on - strand, within LRK53_RS00090 at 27.778 kb on - strand, within LRK53_RS00090 at 27.778 kb on - strand, within LRK53_RS00090 at 27.778 kb on - strand, within LRK53_RS00090 at 27.778 kb on - strand, within LRK53_RS00090 at 27.942 kb on + strand, within LRK53_RS00090 at 27.942 kb on + strand, within LRK53_RS00090 at 27.942 kb on + strand, within LRK53_RS00090 at 27.942 kb on + strand, within LRK53_RS00090 at 27.942 kb on + strand, within LRK53_RS00090 at 27.942 kb on + strand, within LRK53_RS00090 at 27.942 kb on + strand, within LRK53_RS00090 at 27.943 kb on - strand, within LRK53_RS00090 at 27.943 kb on - strand, within LRK53_RS00090 at 27.943 kb on - strand, within LRK53_RS00090 at 27.943 kb on - strand, within LRK53_RS00090 at 27.943 kb on - strand, within LRK53_RS00090 at 27.943 kb on - strand, within LRK53_RS00090 at 27.943 kb on - strand, within LRK53_RS00090 at 27.967 kb on - strand, within LRK53_RS00090 at 27.967 kb on - strand, within LRK53_RS00090 at 27.967 kb on - strand, within LRK53_RS00090 at 28.197 kb on + strand, within LRK53_RS00090 at 28.197 kb on + strand, within LRK53_RS00090 at 28.197 kb on + strand, within LRK53_RS00090 at 28.197 kb on + strand, within LRK53_RS00090 at 28.197 kb on + strand, within LRK53_RS00090 at 28.197 kb on + strand, within LRK53_RS00090 at 28.197 kb on + strand, within LRK53_RS00090 at 28.197 kb on + strand, within LRK53_RS00090 at 28.197 kb on + strand, within LRK53_RS00090 at 28.197 kb on + strand, within LRK53_RS00090 at 28.197 kb on + strand, within LRK53_RS00090 at 28.198 kb on - strand, within LRK53_RS00090 at 28.198 kb on - strand, within LRK53_RS00090 at 28.198 kb on - strand, within LRK53_RS00090 at 28.198 kb on - strand, within LRK53_RS00090 at 28.213 kb on - strand, within LRK53_RS00090 at 28.264 kb on - strand, within LRK53_RS00090 at 28.356 kb on - strand at 28.362 kb on + strand at 28.541 kb on - strand at 28.606 kb on + strand at 28.606 kb on + strand at 28.606 kb on + strand at 28.606 kb on + strand at 28.606 kb on + strand at 28.606 kb on + strand at 28.606 kb on + strand at 28.606 kb on + strand at 28.606 kb on + strand at 28.607 kb on - strand at 28.607 kb on - strand at 28.607 kb on - strand at 28.607 kb on - strand at 28.607 kb on - strand at 28.607 kb on - strand at 28.607 kb on - strand at 28.732 kb on + strand at 28.732 kb on + strand at 28.733 kb on - strand at 28.922 kb on - strand, within LRK53_RS00095 at 28.984 kb on + strand, within LRK53_RS00095 at 28.985 kb on - strand, within LRK53_RS00095 at 28.985 kb on - strand, within LRK53_RS00095 at 28.985 kb on - strand, within LRK53_RS00095 at 28.985 kb on - strand, within LRK53_RS00095 at 29.344 kb on + strand, within LRK53_RS00095 at 29.344 kb on + strand, within LRK53_RS00095 at 29.344 kb on + strand, within LRK53_RS00095 at 29.344 kb on + strand, within LRK53_RS00095 at 29.344 kb on + strand, within LRK53_RS00095 at 29.345 kb on - strand, within LRK53_RS00095 at 29.345 kb on - strand, within LRK53_RS00095 at 29.345 kb on - strand, within LRK53_RS00095 at 29.345 kb on - strand, within LRK53_RS00095 at 29.345 kb on - strand, within LRK53_RS00095 at 29.345 kb on - strand, within LRK53_RS00095 at 29.345 kb on - strand, within LRK53_RS00095 at 29.810 kb on - strand, within LRK53_RS00095 at 29.917 kb on + strand, within LRK53_RS00095 at 29.918 kb on - strand, within LRK53_RS00095 at 29.918 kb on - strand, within LRK53_RS00095 at 30.001 kb on + strand, within LRK53_RS00095 at 30.001 kb on + strand, within LRK53_RS00095 at 30.001 kb on + strand, within LRK53_RS00095 at 30.001 kb on + strand, within LRK53_RS00095 at 30.001 kb on + strand, within LRK53_RS00095 at 30.001 kb on + strand, within LRK53_RS00095 at 30.001 kb on + strand, within LRK53_RS00095 at 30.002 kb on - strand, within LRK53_RS00095 at 30.002 kb on - strand, within LRK53_RS00095 at 30.002 kb on - strand, within LRK53_RS00095 at 30.002 kb on - strand, within LRK53_RS00095 at 30.002 kb on - strand, within LRK53_RS00095 at 30.002 kb on - strand, within LRK53_RS00095 at 30.002 kb on - strand, within LRK53_RS00095 at 30.002 kb on - strand, within LRK53_RS00095 at 30.002 kb on - strand, within LRK53_RS00095 at 30.007 kb on + strand, within LRK53_RS00095 at 30.007 kb on + strand, within LRK53_RS00095 at 30.007 kb on + strand, within LRK53_RS00095 at 30.008 kb on - strand, within LRK53_RS00095 at 30.008 kb on - strand, within LRK53_RS00095 at 30.127 kb on + strand at 30.127 kb on + strand at 30.127 kb on + strand at 30.127 kb on + strand at 30.127 kb on + strand at 30.127 kb on + strand at 30.128 kb on - strand at 30.128 kb on - strand at 30.148 kb on + strand at 30.148 kb on + strand at 30.148 kb on + strand at 30.149 kb on - strand at 30.149 kb on - strand at 30.149 kb on - strand at 30.151 kb on + strand at 30.151 kb on + strand at 30.152 kb on - strand at 30.152 kb on - strand at 30.152 kb on - strand at 30.152 kb on - strand at 30.152 kb on - strand at 30.152 kb on - strand at 30.166 kb on + strand at 30.166 kb on + strand at 30.166 kb on + strand at 30.220 kb on + strand at 30.220 kb on + strand at 30.220 kb on + strand at 30.220 kb on + strand at 30.220 kb on + strand at 30.221 kb on - strand at 30.221 kb on - strand at 30.221 kb on - strand at 30.221 kb on - strand at 30.221 kb on - strand at 30.221 kb on - strand at 30.221 kb on - strand at 30.260 kb on - strand at 30.260 kb on - strand at 30.260 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 27,588 + LRK53_RS00090 0.48 -1.6 27,588 + LRK53_RS00090 0.48 -0.1 27,603 + LRK53_RS00090 0.49 -1.6 27,603 + LRK53_RS00090 0.49 +2.5 27,612 + LRK53_RS00090 0.49 -1.0 27,612 + LRK53_RS00090 0.49 +0.2 27,612 + LRK53_RS00090 0.49 -0.9 27,612 + LRK53_RS00090 0.49 -0.8 27,612 + LRK53_RS00090 0.49 +0.4 27,612 + LRK53_RS00090 0.49 -0.3 27,612 + LRK53_RS00090 0.49 -2.1 27,612 + LRK53_RS00090 0.49 -1.0 27,612 + LRK53_RS00090 0.49 +0.3 27,612 + LRK53_RS00090 0.49 -2.0 27,612 + LRK53_RS00090 0.49 -2.1 27,612 + LRK53_RS00090 0.49 -0.0 27,612 + LRK53_RS00090 0.49 -1.2 27,612 + LRK53_RS00090 0.49 -0.9 27,612 + LRK53_RS00090 0.49 -0.1 27,612 + LRK53_RS00090 0.49 -1.1 27,612 + LRK53_RS00090 0.49 -0.7 27,612 + LRK53_RS00090 0.49 -1.0 27,613 - LRK53_RS00090 0.49 -0.8 27,613 - LRK53_RS00090 0.49 -0.0 27,613 - LRK53_RS00090 0.49 -0.2 27,613 - LRK53_RS00090 0.49 -0.2 27,613 - LRK53_RS00090 0.49 -0.0 27,613 - LRK53_RS00090 0.49 +0.7 27,613 - LRK53_RS00090 0.49 -0.2 27,613 - LRK53_RS00090 0.49 +0.7 27,613 - LRK53_RS00090 0.49 -0.7 27,613 - LRK53_RS00090 0.49 -1.8 27,613 - LRK53_RS00090 0.49 +0.7 27,613 - LRK53_RS00090 0.49 +0.7 27,613 - LRK53_RS00090 0.49 +0.1 27,613 - LRK53_RS00090 0.49 -1.7 27,613 - LRK53_RS00090 0.49 +0.2 27,613 - LRK53_RS00090 0.49 +0.8 27,734 + LRK53_RS00090 0.56 -0.9 27,735 - LRK53_RS00090 0.57 -1.4 27,777 + LRK53_RS00090 0.59 +0.5 27,777 + LRK53_RS00090 0.59 -1.2 27,777 + LRK53_RS00090 0.59 -0.3 27,777 + LRK53_RS00090 0.59 +1.0 27,778 - LRK53_RS00090 0.59 -1.7 27,778 - LRK53_RS00090 0.59 +1.4 27,778 - LRK53_RS00090 0.59 +0.7 27,778 - LRK53_RS00090 0.59 -0.6 27,778 - LRK53_RS00090 0.59 +1.0 27,778 - LRK53_RS00090 0.59 +0.1 27,778 - LRK53_RS00090 0.59 -3.3 27,942 + LRK53_RS00090 0.69 -1.3 27,942 + LRK53_RS00090 0.69 +0.7 27,942 + LRK53_RS00090 0.69 +0.2 27,942 + LRK53_RS00090 0.69 +0.3 27,942 + LRK53_RS00090 0.69 -1.1 27,942 + LRK53_RS00090 0.69 -1.7 27,942 + LRK53_RS00090 0.69 +0.3 27,943 - LRK53_RS00090 0.69 -0.6 27,943 - LRK53_RS00090 0.69 -2.3 27,943 - LRK53_RS00090 0.69 -0.3 27,943 - LRK53_RS00090 0.69 -1.9 27,943 - LRK53_RS00090 0.69 -1.1 27,943 - LRK53_RS00090 0.69 +0.4 27,943 - LRK53_RS00090 0.69 -0.7 27,967 - LRK53_RS00090 0.70 +1.4 27,967 - LRK53_RS00090 0.70 -0.2 27,967 - LRK53_RS00090 0.70 -0.0 28,197 + LRK53_RS00090 0.84 -0.3 28,197 + LRK53_RS00090 0.84 -1.5 28,197 + LRK53_RS00090 0.84 -2.3 28,197 + LRK53_RS00090 0.84 -2.4 28,197 + LRK53_RS00090 0.84 -0.0 28,197 + LRK53_RS00090 0.84 +2.0 28,197 + LRK53_RS00090 0.84 -1.9 28,197 + LRK53_RS00090 0.84 +0.2 28,197 + LRK53_RS00090 0.84 +0.3 28,197 + LRK53_RS00090 0.84 -2.1 28,197 + LRK53_RS00090 0.84 -0.6 28,198 - LRK53_RS00090 0.84 +0.3 28,198 - LRK53_RS00090 0.84 -0.2 28,198 - LRK53_RS00090 0.84 +0.2 28,198 - LRK53_RS00090 0.84 -1.6 28,213 - LRK53_RS00090 0.85 +2.3 28,264 - LRK53_RS00090 0.88 -0.5 28,356 - +0.4 28,362 + +1.0 28,541 - -1.4 28,606 + -1.4 28,606 + +0.8 28,606 + -2.2 28,606 + -0.1 28,606 + -1.2 28,606 + +0.2 28,606 + +0.2 28,606 + +1.5 28,606 + -1.6 28,607 - -1.1 28,607 - -0.0 28,607 - -2.1 28,607 - -0.5 28,607 - -2.4 28,607 - -2.3 28,607 - +0.1 28,732 + -0.0 28,732 + -1.4 28,733 - -1.1 28,922 - LRK53_RS00095 0.20 -1.3 28,984 + LRK53_RS00095 0.24 -0.3 28,985 - LRK53_RS00095 0.24 -1.8 28,985 - LRK53_RS00095 0.24 -0.8 28,985 - LRK53_RS00095 0.24 -0.8 28,985 - LRK53_RS00095 0.24 -0.3 29,344 + LRK53_RS00095 0.45 -0.1 29,344 + LRK53_RS00095 0.45 +2.8 29,344 + LRK53_RS00095 0.45 -0.7 29,344 + LRK53_RS00095 0.45 -0.6 29,344 + LRK53_RS00095 0.45 -3.2 29,345 - LRK53_RS00095 0.45 -0.2 29,345 - LRK53_RS00095 0.45 -2.0 29,345 - LRK53_RS00095 0.45 -1.1 29,345 - LRK53_RS00095 0.45 -0.3 29,345 - LRK53_RS00095 0.45 -1.3 29,345 - LRK53_RS00095 0.45 +0.2 29,345 - LRK53_RS00095 0.45 -0.1 29,810 - LRK53_RS00095 0.73 -0.2 29,917 + LRK53_RS00095 0.79 -1.1 29,918 - LRK53_RS00095 0.79 -0.7 29,918 - LRK53_RS00095 0.79 -1.5 30,001 + LRK53_RS00095 0.84 +0.4 30,001 + LRK53_RS00095 0.84 -0.2 30,001 + LRK53_RS00095 0.84 -0.7 30,001 + LRK53_RS00095 0.84 +0.5 30,001 + LRK53_RS00095 0.84 -0.0 30,001 + LRK53_RS00095 0.84 -1.7 30,001 + LRK53_RS00095 0.84 +0.4 30,002 - LRK53_RS00095 0.84 +2.0 30,002 - LRK53_RS00095 0.84 -0.8 30,002 - LRK53_RS00095 0.84 +1.0 30,002 - LRK53_RS00095 0.84 +1.4 30,002 - LRK53_RS00095 0.84 -1.4 30,002 - LRK53_RS00095 0.84 -1.0 30,002 - LRK53_RS00095 0.84 -2.3 30,002 - LRK53_RS00095 0.84 -0.8 30,002 - LRK53_RS00095 0.84 -0.4 30,007 + LRK53_RS00095 0.85 +0.7 30,007 + LRK53_RS00095 0.85 -0.3 30,007 + LRK53_RS00095 0.85 -0.6 30,008 - LRK53_RS00095 0.85 -0.4 30,008 - LRK53_RS00095 0.85 -1.1 30,127 + -0.8 30,127 + -0.0 30,127 + -3.3 30,127 + +0.6 30,127 + -1.2 30,127 + -0.0 30,128 - -1.4 30,128 - +1.1 30,148 + +0.8 30,148 + +1.0 30,148 + -1.3 30,149 - -2.3 30,149 - -1.6 30,149 - +0.7 30,151 + -1.1 30,151 + -0.5 30,152 - -0.5 30,152 - +2.0 30,152 - +0.4 30,152 - -2.1 30,152 - -0.6 30,152 - +0.4 30,166 + -0.0 30,166 + +0.7 30,166 + -1.3 30,220 + +2.4 30,220 + -0.9 30,220 + -2.3 30,220 + +1.0 30,220 + +2.2 30,221 - -2.1 30,221 - -0.5 30,221 - -1.5 30,221 - -1.7 30,221 - +0.6 30,221 - -0.7 30,221 - -0.2 30,260 - -1.0 30,260 - -0.7 30,260 - -2.6
Or see this region's nucleotide sequence