Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06857

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06856 and MPMX19_06857 are separated by 22 nucleotidesMPMX19_06857 and MPMX19_06858 are separated by 248 nucleotides MPMX19_06856: MPMX19_06856 - Riboflavin transporter, at 124,735 to 125,712 _06856 MPMX19_06857: MPMX19_06857 - Monomeric sarcosine oxidase, at 125,735 to 126,898 _06857 MPMX19_06858: MPMX19_06858 - Acetophenone carboxylase gamma subunit, at 127,147 to 129,207 _06858 Position (kb) 125 126 127Strain fitness (log2 ratio) -2 -1 0 1 2at 124.963 kb on + strand, within MPMX19_06856at 124.963 kb on + strand, within MPMX19_06856at 124.964 kb on - strand, within MPMX19_06856at 124.964 kb on - strand, within MPMX19_06856at 125.038 kb on + strand, within MPMX19_06856at 125.039 kb on - strand, within MPMX19_06856at 125.080 kb on + strand, within MPMX19_06856at 125.080 kb on + strand, within MPMX19_06856at 125.080 kb on + strand, within MPMX19_06856at 125.080 kb on + strand, within MPMX19_06856at 125.081 kb on - strand, within MPMX19_06856at 125.081 kb on - strand, within MPMX19_06856at 125.081 kb on - strand, within MPMX19_06856at 125.371 kb on + strand, within MPMX19_06856at 125.371 kb on + strand, within MPMX19_06856at 125.371 kb on + strand, within MPMX19_06856at 125.371 kb on + strand, within MPMX19_06856at 125.371 kb on + strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.372 kb on - strand, within MPMX19_06856at 125.548 kb on + strand, within MPMX19_06856at 125.549 kb on - strand, within MPMX19_06856at 125.586 kb on + strand, within MPMX19_06856at 125.587 kb on - strand, within MPMX19_06856at 125.976 kb on + strand, within MPMX19_06857at 125.977 kb on - strand, within MPMX19_06857at 125.977 kb on - strand, within MPMX19_06857at 125.977 kb on - strand, within MPMX19_06857at 126.165 kb on + strand, within MPMX19_06857at 126.165 kb on + strand, within MPMX19_06857at 126.165 kb on + strand, within MPMX19_06857at 126.165 kb on + strand, within MPMX19_06857at 126.252 kb on + strand, within MPMX19_06857at 126.252 kb on + strand, within MPMX19_06857at 126.253 kb on - strand, within MPMX19_06857at 126.253 kb on - strand, within MPMX19_06857at 126.253 kb on - strand, within MPMX19_06857at 126.601 kb on - strand, within MPMX19_06857at 126.601 kb on - strand, within MPMX19_06857at 126.601 kb on - strand, within MPMX19_06857at 126.744 kb on + strand, within MPMX19_06857at 126.745 kb on - strand, within MPMX19_06857at 126.890 kb on - strandat 126.890 kb on - strandat 127.022 kb on + strandat 127.022 kb on + strandat 127.022 kb on + strandat 127.022 kb on + strandat 127.023 kb on - strandat 127.023 kb on - strandat 127.023 kb on - strandat 127.023 kb on - strandat 127.038 kb on + strandat 127.038 kb on + strandat 127.039 kb on - strandat 127.039 kb on - strandat 127.039 kb on - strandat 127.039 kb on - strandat 127.039 kb on - strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.049 kb on + strandat 127.050 kb on - strandat 127.050 kb on - strandat 127.050 kb on - strandat 127.050 kb on - strandat 127.050 kb on - strandat 127.073 kb on + strandat 127.073 kb on + strandat 127.073 kb on + strandat 127.074 kb on - strandat 127.074 kb on - strandat 127.074 kb on - strandat 127.074 kb on - strandat 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.480 kb on + strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.481 kb on - strand, within MPMX19_06858at 127.769 kb on - strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.801 kb on + strand, within MPMX19_06858at 127.802 kb on - strand, within MPMX19_06858at 127.802 kb on - strand, within MPMX19_06858at 127.802 kb on - strand, within MPMX19_06858at 127.802 kb on - strand, within MPMX19_06858

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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124,963 + MPMX19_06856 0.23 +0.2
124,963 + MPMX19_06856 0.23 +0.6
124,964 - MPMX19_06856 0.23 +0.5
124,964 - MPMX19_06856 0.23 -0.6
125,038 + MPMX19_06856 0.31 -0.5
125,039 - MPMX19_06856 0.31 +0.5
125,080 + MPMX19_06856 0.35 -0.3
125,080 + MPMX19_06856 0.35 -0.1
125,080 + MPMX19_06856 0.35 +0.7
125,080 + MPMX19_06856 0.35 -1.1
125,081 - MPMX19_06856 0.35 -0.1
125,081 - MPMX19_06856 0.35 -0.5
125,081 - MPMX19_06856 0.35 +1.8
125,371 + MPMX19_06856 0.65 +1.3
125,371 + MPMX19_06856 0.65 +0.7
125,371 + MPMX19_06856 0.65 -2.3
125,371 + MPMX19_06856 0.65 -0.4
125,371 + MPMX19_06856 0.65 -0.5
125,372 - MPMX19_06856 0.65 +0.3
125,372 - MPMX19_06856 0.65 +0.3
125,372 - MPMX19_06856 0.65 +0.8
125,372 - MPMX19_06856 0.65 -0.1
125,372 - MPMX19_06856 0.65 +1.1
125,372 - MPMX19_06856 0.65 -0.7
125,372 - MPMX19_06856 0.65 +0.5
125,372 - MPMX19_06856 0.65 -0.1
125,548 + MPMX19_06856 0.83 -0.2
125,549 - MPMX19_06856 0.83 -2.1
125,586 + MPMX19_06856 0.87 +1.4
125,587 - MPMX19_06856 0.87 +0.4
125,976 + MPMX19_06857 0.21 -0.5
125,977 - MPMX19_06857 0.21 +0.5
125,977 - MPMX19_06857 0.21 +0.7
125,977 - MPMX19_06857 0.21 -0.5
126,165 + MPMX19_06857 0.37 -0.5
126,165 + MPMX19_06857 0.37 +0.5
126,165 + MPMX19_06857 0.37 -0.5
126,165 + MPMX19_06857 0.37 +1.2
126,252 + MPMX19_06857 0.44 -1.4
126,252 + MPMX19_06857 0.44 +0.1
126,253 - MPMX19_06857 0.45 +0.6
126,253 - MPMX19_06857 0.45 +0.2
126,253 - MPMX19_06857 0.45 -1.1
126,601 - MPMX19_06857 0.74 +0.9
126,601 - MPMX19_06857 0.74 +0.8
126,601 - MPMX19_06857 0.74 +0.2
126,744 + MPMX19_06857 0.87 +0.7
126,745 - MPMX19_06857 0.87 -0.3
126,890 - +0.5
126,890 - +0.3
127,022 + +0.6
127,022 + -0.4
127,022 + +0.4
127,022 + -0.1
127,023 - +2.2
127,023 - +0.1
127,023 - -0.8
127,023 - -0.6
127,038 + +1.2
127,038 + -1.1
127,039 - +0.7
127,039 - +0.4
127,039 - -1.2
127,039 - +1.5
127,039 - -1.3
127,049 + +1.1
127,049 + -0.3
127,049 + +1.2
127,049 + +0.0
127,049 + -1.1
127,049 + +0.0
127,049 + +1.5
127,049 + +0.3
127,049 + -1.5
127,050 - -2.1
127,050 - +0.3
127,050 - +0.4
127,050 - -1.6
127,050 - -0.5
127,073 + +1.1
127,073 + -0.1
127,073 + +0.5
127,074 - -0.7
127,074 - -1.1
127,074 - -0.2
127,074 - -0.7
127,480 + MPMX19_06858 0.16 -0.5
127,480 + MPMX19_06858 0.16 -0.0
127,480 + MPMX19_06858 0.16 -0.7
127,480 + MPMX19_06858 0.16 -2.4
127,480 + MPMX19_06858 0.16 +0.2
127,480 + MPMX19_06858 0.16 +0.2
127,480 + MPMX19_06858 0.16 -0.3
127,480 + MPMX19_06858 0.16 +1.2
127,480 + MPMX19_06858 0.16 +1.0
127,480 + MPMX19_06858 0.16 +0.3
127,480 + MPMX19_06858 0.16 -0.3
127,480 + MPMX19_06858 0.16 -0.1
127,480 + MPMX19_06858 0.16 -1.6
127,481 - MPMX19_06858 0.16 +2.0
127,481 - MPMX19_06858 0.16 +1.2
127,481 - MPMX19_06858 0.16 +0.9
127,481 - MPMX19_06858 0.16 +0.2
127,481 - MPMX19_06858 0.16 +0.5
127,481 - MPMX19_06858 0.16 +0.4
127,481 - MPMX19_06858 0.16 +0.2
127,481 - MPMX19_06858 0.16 -0.5
127,481 - MPMX19_06858 0.16 -0.1
127,481 - MPMX19_06858 0.16 +0.5
127,481 - MPMX19_06858 0.16 -0.9
127,481 - MPMX19_06858 0.16 -1.5
127,769 - MPMX19_06858 0.30 +0.3
127,801 + MPMX19_06858 0.32 -1.3
127,801 + MPMX19_06858 0.32 +0.0
127,801 + MPMX19_06858 0.32 +0.6
127,801 + MPMX19_06858 0.32 +0.8
127,801 + MPMX19_06858 0.32 +0.4
127,801 + MPMX19_06858 0.32 -2.1
127,801 + MPMX19_06858 0.32 -0.8
127,801 + MPMX19_06858 0.32 -0.1
127,802 - MPMX19_06858 0.32 -0.3
127,802 - MPMX19_06858 0.32 +0.0
127,802 - MPMX19_06858 0.32 +0.0
127,802 - MPMX19_06858 0.32 -1.9

Or see this region's nucleotide sequence