Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06836 and MPMX19_06837 are separated by 41 nucleotides MPMX19_06837 and MPMX19_06838 are separated by 48 nucleotides MPMX19_06838 and MPMX19_06839 are separated by 148 nucleotides
MPMX19_06836: MPMX19_06836 - Glutarate-semialdehyde dehydrogenase, at 101,184 to 102,677
_06836
MPMX19_06837: MPMX19_06837 - Putrescine--pyruvate aminotransferase, at 102,719 to 104,098
_06837
MPMX19_06838: MPMX19_06838 - hypothetical protein, at 104,147 to 104,350
_06838
MPMX19_06839: MPMX19_06839 - Glutathione import ATP-binding protein GsiA, at 104,499 to 106,148
_06839
Position (kb) 102
103
104
105 Strain fitness (log2 ratio) -2
-1
0
1
2 at 102.111 kb on + strand, within MPMX19_06836 at 102.111 kb on + strand, within MPMX19_06836 at 102.111 kb on + strand, within MPMX19_06836 at 102.111 kb on + strand, within MPMX19_06836 at 102.111 kb on + strand, within MPMX19_06836 at 102.111 kb on + strand, within MPMX19_06836 at 102.111 kb on + strand, within MPMX19_06836 at 102.111 kb on + strand, within MPMX19_06836 at 102.111 kb on + strand, within MPMX19_06836 at 102.111 kb on + strand, within MPMX19_06836 at 102.111 kb on + strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.112 kb on - strand, within MPMX19_06836 at 102.129 kb on + strand, within MPMX19_06836 at 102.129 kb on + strand, within MPMX19_06836 at 102.130 kb on - strand, within MPMX19_06836 at 102.130 kb on - strand, within MPMX19_06836 at 102.130 kb on - strand, within MPMX19_06836 at 102.130 kb on - strand, within MPMX19_06836 at 102.327 kb on + strand, within MPMX19_06836 at 102.327 kb on + strand, within MPMX19_06836 at 102.328 kb on - strand, within MPMX19_06836 at 102.328 kb on - strand, within MPMX19_06836 at 102.328 kb on - strand, within MPMX19_06836 at 102.459 kb on + strand, within MPMX19_06836 at 102.474 kb on + strand, within MPMX19_06836 at 102.528 kb on + strand at 102.654 kb on + strand at 102.654 kb on + strand at 102.655 kb on - strand at 102.655 kb on - strand at 102.655 kb on - strand at 102.655 kb on - strand at 102.655 kb on - strand at 102.655 kb on - strand at 102.655 kb on - strand at 102.655 kb on - strand at 102.655 kb on - strand at 102.655 kb on - strand at 102.655 kb on - strand at 102.845 kb on + strand at 102.845 kb on + strand at 102.846 kb on - strand at 102.846 kb on - strand at 102.846 kb on - strand at 102.846 kb on - strand at 102.846 kb on - strand at 102.896 kb on + strand, within MPMX19_06837 at 102.897 kb on - strand, within MPMX19_06837 at 102.897 kb on - strand, within MPMX19_06837 at 102.897 kb on - strand, within MPMX19_06837 at 102.897 kb on - strand, within MPMX19_06837 at 102.897 kb on - strand, within MPMX19_06837 at 102.897 kb on - strand, within MPMX19_06837 at 102.914 kb on + strand, within MPMX19_06837 at 102.968 kb on + strand, within MPMX19_06837 at 102.971 kb on + strand, within MPMX19_06837 at 102.971 kb on + strand, within MPMX19_06837 at 102.971 kb on + strand, within MPMX19_06837 at 102.971 kb on + strand, within MPMX19_06837 at 102.971 kb on + strand, within MPMX19_06837 at 102.972 kb on - strand, within MPMX19_06837 at 102.972 kb on - strand, within MPMX19_06837 at 102.972 kb on - strand, within MPMX19_06837 at 102.972 kb on - strand, within MPMX19_06837 at 102.980 kb on + strand, within MPMX19_06837 at 102.980 kb on + strand, within MPMX19_06837 at 102.981 kb on - strand, within MPMX19_06837 at 102.981 kb on - strand, within MPMX19_06837 at 102.981 kb on - strand, within MPMX19_06837 at 103.115 kb on + strand, within MPMX19_06837 at 103.115 kb on + strand, within MPMX19_06837 at 103.116 kb on - strand, within MPMX19_06837 at 103.118 kb on + strand, within MPMX19_06837 at 103.118 kb on + strand, within MPMX19_06837 at 103.118 kb on + strand, within MPMX19_06837 at 103.118 kb on + strand, within MPMX19_06837 at 103.118 kb on + strand, within MPMX19_06837 at 103.119 kb on - strand, within MPMX19_06837 at 103.175 kb on + strand, within MPMX19_06837 at 103.176 kb on - strand, within MPMX19_06837 at 103.277 kb on + strand, within MPMX19_06837 at 103.277 kb on + strand, within MPMX19_06837 at 103.278 kb on - strand, within MPMX19_06837 at 103.280 kb on + strand, within MPMX19_06837 at 103.280 kb on + strand, within MPMX19_06837 at 103.280 kb on + strand, within MPMX19_06837 at 103.280 kb on + strand, within MPMX19_06837 at 103.280 kb on + strand, within MPMX19_06837 at 103.281 kb on - strand, within MPMX19_06837 at 103.281 kb on - strand, within MPMX19_06837 at 103.281 kb on - strand, within MPMX19_06837 at 103.281 kb on - strand, within MPMX19_06837 at 103.551 kb on - strand, within MPMX19_06837 at 103.601 kb on + strand, within MPMX19_06837 at 103.601 kb on + strand, within MPMX19_06837 at 103.601 kb on + strand, within MPMX19_06837 at 103.601 kb on + strand, within MPMX19_06837 at 103.602 kb on - strand, within MPMX19_06837 at 103.602 kb on - strand, within MPMX19_06837 at 103.697 kb on + strand, within MPMX19_06837 at 103.697 kb on + strand, within MPMX19_06837 at 103.697 kb on + strand, within MPMX19_06837 at 103.698 kb on - strand, within MPMX19_06837 at 103.698 kb on - strand, within MPMX19_06837 at 103.698 kb on - strand, within MPMX19_06837 at 103.698 kb on - strand, within MPMX19_06837 at 103.736 kb on - strand, within MPMX19_06837 at 103.794 kb on - strand, within MPMX19_06837 at 104.148 kb on + strand at 104.148 kb on + strand at 104.148 kb on + strand at 104.148 kb on + strand at 104.148 kb on + strand at 104.149 kb on - strand at 104.149 kb on - strand at 104.149 kb on - strand at 104.238 kb on + strand, within MPMX19_06838 at 104.239 kb on - strand, within MPMX19_06838 at 104.239 kb on - strand, within MPMX19_06838 at 104.394 kb on - strand at 104.394 kb on - strand at 104.397 kb on + strand at 104.397 kb on + strand at 104.397 kb on + strand at 104.397 kb on + strand at 104.397 kb on + strand at 104.397 kb on + strand at 104.398 kb on - strand at 104.414 kb on - strand at 104.421 kb on + strand at 104.421 kb on + strand at 104.421 kb on + strand at 104.421 kb on + strand at 104.421 kb on + strand at 104.422 kb on - strand at 104.422 kb on - strand at 104.422 kb on - strand at 104.422 kb on - strand at 104.590 kb on + strand at 104.650 kb on + strand at 104.713 kb on + strand, within MPMX19_06839 at 104.713 kb on + strand, within MPMX19_06839 at 104.713 kb on + strand, within MPMX19_06839 at 104.713 kb on + strand, within MPMX19_06839 at 104.713 kb on + strand, within MPMX19_06839 at 104.713 kb on + strand, within MPMX19_06839 at 104.713 kb on + strand, within MPMX19_06839 at 104.713 kb on + strand, within MPMX19_06839 at 104.714 kb on - strand, within MPMX19_06839 at 104.714 kb on - strand, within MPMX19_06839 at 104.714 kb on - strand, within MPMX19_06839 at 104.714 kb on - strand, within MPMX19_06839 at 104.714 kb on - strand, within MPMX19_06839 at 104.714 kb on - strand, within MPMX19_06839 at 104.714 kb on - strand, within MPMX19_06839 at 104.714 kb on - strand, within MPMX19_06839 at 104.714 kb on - strand, within MPMX19_06839 at 104.714 kb on - strand, within MPMX19_06839 at 104.971 kb on + strand, within MPMX19_06839 at 104.971 kb on + strand, within MPMX19_06839 at 104.971 kb on + strand, within MPMX19_06839 at 104.971 kb on + strand, within MPMX19_06839 at 104.971 kb on + strand, within MPMX19_06839 at 104.971 kb on + strand, within MPMX19_06839 at 104.971 kb on + strand, within MPMX19_06839 at 104.971 kb on + strand, within MPMX19_06839 at 104.971 kb on + strand, within MPMX19_06839 at 104.972 kb on - strand, within MPMX19_06839 at 104.972 kb on - strand, within MPMX19_06839 at 104.972 kb on - strand, within MPMX19_06839 at 104.972 kb on - strand, within MPMX19_06839 at 104.972 kb on - strand, within MPMX19_06839 at 104.972 kb on - strand, within MPMX19_06839 at 104.972 kb on - strand, within MPMX19_06839 at 104.972 kb on - strand, within MPMX19_06839
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 102,111 + MPMX19_06836 0.62 +0.4 102,111 + MPMX19_06836 0.62 +1.3 102,111 + MPMX19_06836 0.62 -0.9 102,111 + MPMX19_06836 0.62 -1.1 102,111 + MPMX19_06836 0.62 +0.4 102,111 + MPMX19_06836 0.62 -0.6 102,111 + MPMX19_06836 0.62 +0.5 102,111 + MPMX19_06836 0.62 +1.0 102,111 + MPMX19_06836 0.62 -0.2 102,111 + MPMX19_06836 0.62 -1.5 102,111 + MPMX19_06836 0.62 +0.0 102,112 - MPMX19_06836 0.62 -0.4 102,112 - MPMX19_06836 0.62 -0.0 102,112 - MPMX19_06836 0.62 -0.2 102,112 - MPMX19_06836 0.62 +0.6 102,112 - MPMX19_06836 0.62 +1.4 102,112 - MPMX19_06836 0.62 -0.5 102,112 - MPMX19_06836 0.62 +0.4 102,112 - MPMX19_06836 0.62 +0.3 102,112 - MPMX19_06836 0.62 -0.5 102,112 - MPMX19_06836 0.62 +0.2 102,112 - MPMX19_06836 0.62 -0.9 102,112 - MPMX19_06836 0.62 -0.8 102,112 - MPMX19_06836 0.62 +1.1 102,112 - MPMX19_06836 0.62 -1.4 102,112 - MPMX19_06836 0.62 -2.5 102,129 + MPMX19_06836 0.63 -0.2 102,129 + MPMX19_06836 0.63 +0.3 102,130 - MPMX19_06836 0.63 -1.3 102,130 - MPMX19_06836 0.63 +2.5 102,130 - MPMX19_06836 0.63 -2.4 102,130 - MPMX19_06836 0.63 -0.8 102,327 + MPMX19_06836 0.77 -0.6 102,327 + MPMX19_06836 0.77 -0.9 102,328 - MPMX19_06836 0.77 +0.4 102,328 - MPMX19_06836 0.77 -2.2 102,328 - MPMX19_06836 0.77 +0.4 102,459 + MPMX19_06836 0.85 +0.4 102,474 + MPMX19_06836 0.86 -1.2 102,528 + +0.5 102,654 + -0.6 102,654 + -0.3 102,655 - -1.6 102,655 - -0.7 102,655 - -0.6 102,655 - -0.1 102,655 - -0.7 102,655 - +0.3 102,655 - +0.2 102,655 - -1.3 102,655 - -0.6 102,655 - -0.8 102,655 - -1.3 102,845 + -1.3 102,845 + -0.2 102,846 - +0.2 102,846 - -0.0 102,846 - -0.8 102,846 - +0.5 102,846 - +0.8 102,896 + MPMX19_06837 0.13 +1.4 102,897 - MPMX19_06837 0.13 +0.8 102,897 - MPMX19_06837 0.13 +0.7 102,897 - MPMX19_06837 0.13 -0.3 102,897 - MPMX19_06837 0.13 +0.4 102,897 - MPMX19_06837 0.13 -0.5 102,897 - MPMX19_06837 0.13 +0.7 102,914 + MPMX19_06837 0.14 +0.5 102,968 + MPMX19_06837 0.18 -0.6 102,971 + MPMX19_06837 0.18 -0.2 102,971 + MPMX19_06837 0.18 +0.4 102,971 + MPMX19_06837 0.18 +0.8 102,971 + MPMX19_06837 0.18 -0.2 102,971 + MPMX19_06837 0.18 -0.2 102,972 - MPMX19_06837 0.18 +0.1 102,972 - MPMX19_06837 0.18 +1.2 102,972 - MPMX19_06837 0.18 -0.1 102,972 - MPMX19_06837 0.18 +1.5 102,980 + MPMX19_06837 0.19 -1.2 102,980 + MPMX19_06837 0.19 +1.0 102,981 - MPMX19_06837 0.19 +0.3 102,981 - MPMX19_06837 0.19 -0.3 102,981 - MPMX19_06837 0.19 +1.8 103,115 + MPMX19_06837 0.29 +0.7 103,115 + MPMX19_06837 0.29 -1.1 103,116 - MPMX19_06837 0.29 -1.6 103,118 + MPMX19_06837 0.29 -0.6 103,118 + MPMX19_06837 0.29 -1.6 103,118 + MPMX19_06837 0.29 +1.6 103,118 + MPMX19_06837 0.29 +1.2 103,118 + MPMX19_06837 0.29 -0.5 103,119 - MPMX19_06837 0.29 +0.2 103,175 + MPMX19_06837 0.33 -0.7 103,176 - MPMX19_06837 0.33 +0.1 103,277 + MPMX19_06837 0.40 -0.5 103,277 + MPMX19_06837 0.40 -0.3 103,278 - MPMX19_06837 0.41 +0.8 103,280 + MPMX19_06837 0.41 -1.0 103,280 + MPMX19_06837 0.41 -1.8 103,280 + MPMX19_06837 0.41 +0.1 103,280 + MPMX19_06837 0.41 -1.1 103,280 + MPMX19_06837 0.41 +1.3 103,281 - MPMX19_06837 0.41 +0.1 103,281 - MPMX19_06837 0.41 +0.4 103,281 - MPMX19_06837 0.41 +0.7 103,281 - MPMX19_06837 0.41 -0.1 103,551 - MPMX19_06837 0.60 +0.6 103,601 + MPMX19_06837 0.64 -1.8 103,601 + MPMX19_06837 0.64 +0.1 103,601 + MPMX19_06837 0.64 -1.7 103,601 + MPMX19_06837 0.64 +0.8 103,602 - MPMX19_06837 0.64 -1.8 103,602 - MPMX19_06837 0.64 +1.1 103,697 + MPMX19_06837 0.71 -1.1 103,697 + MPMX19_06837 0.71 +0.6 103,697 + MPMX19_06837 0.71 -0.7 103,698 - MPMX19_06837 0.71 +0.7 103,698 - MPMX19_06837 0.71 +0.5 103,698 - MPMX19_06837 0.71 -1.8 103,698 - MPMX19_06837 0.71 +0.8 103,736 - MPMX19_06837 0.74 +0.3 103,794 - MPMX19_06837 0.78 +0.9 104,148 + +0.1 104,148 + +0.2 104,148 + +2.1 104,148 + -0.8 104,148 + -1.0 104,149 - +0.0 104,149 - +0.7 104,149 - +0.4 104,238 + MPMX19_06838 0.45 +1.7 104,239 - MPMX19_06838 0.45 -1.6 104,239 - MPMX19_06838 0.45 +1.2 104,394 - +0.0 104,394 - +1.2 104,397 + -0.5 104,397 + +0.3 104,397 + +0.8 104,397 + +1.0 104,397 + -0.3 104,397 + -0.8 104,398 - -1.1 104,414 - -0.2 104,421 + +0.2 104,421 + -0.7 104,421 + -0.5 104,421 + -1.5 104,421 + +1.5 104,422 - -1.3 104,422 - -0.3 104,422 - +1.3 104,422 - -0.1 104,590 + -0.2 104,650 + -0.2 104,713 + MPMX19_06839 0.13 +0.3 104,713 + MPMX19_06839 0.13 -0.8 104,713 + MPMX19_06839 0.13 +0.0 104,713 + MPMX19_06839 0.13 +1.4 104,713 + MPMX19_06839 0.13 +0.7 104,713 + MPMX19_06839 0.13 -0.3 104,713 + MPMX19_06839 0.13 +0.4 104,713 + MPMX19_06839 0.13 -0.2 104,714 - MPMX19_06839 0.13 -0.0 104,714 - MPMX19_06839 0.13 -0.6 104,714 - MPMX19_06839 0.13 +0.6 104,714 - MPMX19_06839 0.13 +0.7 104,714 - MPMX19_06839 0.13 +2.3 104,714 - MPMX19_06839 0.13 +0.5 104,714 - MPMX19_06839 0.13 +0.3 104,714 - MPMX19_06839 0.13 -0.2 104,714 - MPMX19_06839 0.13 +0.9 104,714 - MPMX19_06839 0.13 +0.3 104,971 + MPMX19_06839 0.29 -0.6 104,971 + MPMX19_06839 0.29 -1.3 104,971 + MPMX19_06839 0.29 -1.3 104,971 + MPMX19_06839 0.29 -1.1 104,971 + MPMX19_06839 0.29 +0.6 104,971 + MPMX19_06839 0.29 +0.3 104,971 + MPMX19_06839 0.29 -1.3 104,971 + MPMX19_06839 0.29 +0.3 104,971 + MPMX19_06839 0.29 -1.3 104,972 - MPMX19_06839 0.29 -1.4 104,972 - MPMX19_06839 0.29 -1.3 104,972 - MPMX19_06839 0.29 +0.4 104,972 - MPMX19_06839 0.29 +0.4 104,972 - MPMX19_06839 0.29 +0.4 104,972 - MPMX19_06839 0.29 -0.4 104,972 - MPMX19_06839 0.29 -0.2 104,972 - MPMX19_06839 0.29 +0.1
Or see this region's nucleotide sequence