Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06789

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06788 and MPMX19_06789 are separated by 40 nucleotidesMPMX19_06789 and MPMX19_06790 are separated by 53 nucleotides MPMX19_06788: MPMX19_06788 - putative protein YiaX1, at 53,322 to 54,305 _06788 MPMX19_06789: MPMX19_06789 - Octopine catabolism/uptake operon regulatory protein OccR, at 54,346 to 55,242 _06789 MPMX19_06790: MPMX19_06790 - D-amino acid dehydrogenase, at 55,296 to 56,621 _06790 Position (kb) 54 55 56Strain fitness (log2 ratio) -1 0 1at 54.066 kb on + strand, within MPMX19_06788at 54.067 kb on - strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.177 kb on + strand, within MPMX19_06788at 54.178 kb on - strand, within MPMX19_06788at 54.280 kb on + strandat 54.310 kb on + strandat 54.311 kb on - strandat 54.311 kb on - strandat 54.311 kb on - strandat 54.312 kb on + strandat 54.312 kb on + strandat 54.312 kb on + strandat 54.313 kb on - strandat 54.313 kb on - strandat 54.988 kb on + strand, within MPMX19_06789at 54.988 kb on + strand, within MPMX19_06789at 54.988 kb on + strand, within MPMX19_06789at 54.989 kb on - strand, within MPMX19_06789at 54.989 kb on - strand, within MPMX19_06789at 55.519 kb on + strand, within MPMX19_06790at 55.520 kb on - strand, within MPMX19_06790at 55.520 kb on - strand, within MPMX19_06790at 55.520 kb on - strand, within MPMX19_06790

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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54,066 + MPMX19_06788 0.76 +0.6
54,067 - MPMX19_06788 0.76 -0.5
54,177 + MPMX19_06788 0.87 -0.4
54,177 + MPMX19_06788 0.87 +0.1
54,177 + MPMX19_06788 0.87 -1.3
54,177 + MPMX19_06788 0.87 +0.7
54,177 + MPMX19_06788 0.87 +1.0
54,178 - MPMX19_06788 0.87 +0.5
54,280 + +0.2
54,310 + -0.1
54,311 - +0.9
54,311 - +0.5
54,311 - -1.5
54,312 + -0.4
54,312 + +0.1
54,312 + +0.0
54,313 - -0.2
54,313 - -0.1
54,988 + MPMX19_06789 0.72 -0.3
54,988 + MPMX19_06789 0.72 -0.9
54,988 + MPMX19_06789 0.72 -0.5
54,989 - MPMX19_06789 0.72 -0.4
54,989 - MPMX19_06789 0.72 -0.1
55,519 + MPMX19_06790 0.17 -0.5
55,520 - MPMX19_06790 0.17 -1.1
55,520 - MPMX19_06790 0.17 +0.1
55,520 - MPMX19_06790 0.17 -1.3

Or see this region's nucleotide sequence