Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06765 and MPMX19_06766 are separated by 222 nucleotides MPMX19_06766 and MPMX19_06767 overlap by 4 nucleotides
MPMX19_06765: MPMX19_06765 - Hydrogen peroxide-inducible genes activator, at 31,100 to 32,032
_06765
MPMX19_06766: MPMX19_06766 - Bicarbonate transport ATP-binding protein CmpC, at 32,255 to 33,187
_06766
MPMX19_06767: MPMX19_06767 - hypothetical protein, at 33,184 to 34,701
_06767
Position (kb) 32
33
34 Strain fitness (log2 ratio) -2
-1
0
1 at 31.593 kb on + strand, within MPMX19_06765 at 31.594 kb on - strand, within MPMX19_06765 at 31.594 kb on - strand, within MPMX19_06765 at 32.136 kb on + strand at 32.136 kb on + strand at 32.137 kb on - strand at 32.137 kb on - strand at 32.137 kb on - strand at 32.160 kb on + strand at 32.160 kb on + strand at 32.160 kb on + strand at 32.161 kb on - strand at 32.265 kb on + strand at 32.265 kb on + strand at 32.265 kb on + strand at 32.266 kb on - strand at 32.435 kb on + strand, within MPMX19_06766 at 33.262 kb on + strand at 33.262 kb on + strand at 33.263 kb on - strand at 33.475 kb on + strand, within MPMX19_06767 at 33.475 kb on + strand, within MPMX19_06767 at 33.475 kb on + strand, within MPMX19_06767 at 33.475 kb on + strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.476 kb on - strand, within MPMX19_06767 at 33.478 kb on + strand, within MPMX19_06767 at 33.478 kb on + strand, within MPMX19_06767 at 33.478 kb on + strand, within MPMX19_06767 at 33.478 kb on + strand, within MPMX19_06767 at 33.479 kb on - strand, within MPMX19_06767 at 33.479 kb on - strand, within MPMX19_06767 at 33.503 kb on - strand, within MPMX19_06767 at 33.503 kb on - strand, within MPMX19_06767 at 33.503 kb on - strand, within MPMX19_06767 at 33.565 kb on + strand, within MPMX19_06767 at 33.566 kb on - strand, within MPMX19_06767 at 33.647 kb on - strand, within MPMX19_06767 at 33.647 kb on - strand, within MPMX19_06767 at 33.647 kb on - strand, within MPMX19_06767 at 33.736 kb on + strand, within MPMX19_06767 at 33.737 kb on - strand, within MPMX19_06767 at 33.794 kb on - strand, within MPMX19_06767 at 33.811 kb on + strand, within MPMX19_06767 at 33.812 kb on - strand, within MPMX19_06767 at 33.838 kb on + strand, within MPMX19_06767 at 33.838 kb on + strand, within MPMX19_06767 at 33.838 kb on + strand, within MPMX19_06767 at 33.838 kb on + strand, within MPMX19_06767 at 33.839 kb on - strand, within MPMX19_06767 at 33.839 kb on - strand, within MPMX19_06767
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 31,593 + MPMX19_06765 0.53 -0.3 31,594 - MPMX19_06765 0.53 -0.2 31,594 - MPMX19_06765 0.53 -1.1 32,136 + +0.5 32,136 + -0.4 32,137 - +0.6 32,137 - -0.1 32,137 - -0.5 32,160 + -0.3 32,160 + -0.1 32,160 + +0.5 32,161 - -1.5 32,265 + -0.1 32,265 + +0.9 32,265 + -1.1 32,266 - -0.1 32,435 + MPMX19_06766 0.19 -2.1 33,262 + -1.4 33,262 + +0.7 33,263 - +1.5 33,475 + MPMX19_06767 0.19 +0.4 33,475 + MPMX19_06767 0.19 -2.1 33,475 + MPMX19_06767 0.19 -1.0 33,475 + MPMX19_06767 0.19 -1.6 33,476 - MPMX19_06767 0.19 -0.9 33,476 - MPMX19_06767 0.19 +1.2 33,476 - MPMX19_06767 0.19 -0.2 33,476 - MPMX19_06767 0.19 +0.5 33,476 - MPMX19_06767 0.19 +0.1 33,476 - MPMX19_06767 0.19 -0.5 33,478 + MPMX19_06767 0.19 -0.1 33,478 + MPMX19_06767 0.19 +0.9 33,478 + MPMX19_06767 0.19 -1.9 33,478 + MPMX19_06767 0.19 -1.1 33,479 - MPMX19_06767 0.19 -0.5 33,479 - MPMX19_06767 0.19 +1.2 33,503 - MPMX19_06767 0.21 -1.5 33,503 - MPMX19_06767 0.21 -1.6 33,503 - MPMX19_06767 0.21 +0.2 33,565 + MPMX19_06767 0.25 -1.3 33,566 - MPMX19_06767 0.25 +1.7 33,647 - MPMX19_06767 0.31 -0.1 33,647 - MPMX19_06767 0.31 +0.5 33,647 - MPMX19_06767 0.31 -0.2 33,736 + MPMX19_06767 0.36 -0.8 33,737 - MPMX19_06767 0.36 -1.3 33,794 - MPMX19_06767 0.40 -1.5 33,811 + MPMX19_06767 0.41 -0.4 33,812 - MPMX19_06767 0.41 -1.5 33,838 + MPMX19_06767 0.43 -1.3 33,838 + MPMX19_06767 0.43 +1.2 33,838 + MPMX19_06767 0.43 +0.9 33,838 + MPMX19_06767 0.43 -0.7 33,839 - MPMX19_06767 0.43 -1.4 33,839 - MPMX19_06767 0.43 -0.1
Or see this region's nucleotide sequence