Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06378 and MPMX19_06379 are separated by 66 nucleotides MPMX19_06379 and MPMX19_06380 are separated by 121 nucleotides MPMX19_06380 and MPMX19_06381 are separated by 425 nucleotides
MPMX19_06378: MPMX19_06378 - hypothetical protein, at 147,424 to 148,062
_06378
MPMX19_06379: MPMX19_06379 - hypothetical protein, at 148,129 to 148,584
_06379
MPMX19_06380: MPMX19_06380 - hypothetical protein, at 148,706 to 149,218
_06380
MPMX19_06381: MPMX19_06381 - putative manganese efflux pump MntP, at 149,644 to 150,210
_06381
Position (kb) 148
149
150 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 147.717 kb on + strand, within MPMX19_06378 at 147.717 kb on + strand, within MPMX19_06378 at 147.766 kb on + strand, within MPMX19_06378 at 147.767 kb on - strand, within MPMX19_06378 at 147.767 kb on - strand, within MPMX19_06378 at 147.767 kb on - strand, within MPMX19_06378 at 147.997 kb on + strand, within MPMX19_06378 at 147.997 kb on + strand, within MPMX19_06378 at 147.997 kb on + strand, within MPMX19_06378 at 147.997 kb on + strand, within MPMX19_06378 at 147.997 kb on + strand, within MPMX19_06378 at 147.997 kb on + strand, within MPMX19_06378 at 147.997 kb on + strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 147.998 kb on - strand, within MPMX19_06378 at 148.115 kb on + strand at 148.115 kb on + strand at 148.115 kb on + strand at 148.115 kb on + strand at 148.115 kb on + strand at 148.115 kb on + strand at 148.115 kb on + strand at 148.115 kb on + strand at 148.115 kb on + strand at 148.115 kb on + strand at 148.115 kb on + strand at 148.115 kb on + strand at 148.115 kb on + strand at 148.116 kb on - strand at 148.116 kb on - strand at 148.116 kb on - strand at 148.116 kb on - strand at 148.116 kb on - strand at 148.116 kb on - strand at 148.116 kb on - strand at 148.116 kb on - strand at 148.116 kb on - strand at 148.116 kb on - strand at 148.270 kb on + strand, within MPMX19_06379 at 148.270 kb on + strand, within MPMX19_06379 at 148.270 kb on + strand, within MPMX19_06379 at 148.271 kb on - strand, within MPMX19_06379 at 148.271 kb on - strand, within MPMX19_06379 at 148.512 kb on + strand, within MPMX19_06379 at 148.512 kb on + strand, within MPMX19_06379 at 148.512 kb on + strand, within MPMX19_06379 at 148.513 kb on - strand, within MPMX19_06379 at 148.648 kb on + strand at 148.648 kb on + strand at 148.648 kb on + strand at 148.648 kb on + strand at 148.649 kb on - strand at 148.649 kb on - strand at 148.649 kb on - strand at 148.649 kb on - strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.650 kb on + strand at 148.651 kb on - strand at 148.651 kb on - strand at 148.651 kb on - strand at 148.651 kb on - strand at 148.651 kb on - strand at 148.651 kb on - strand at 148.651 kb on - strand at 148.651 kb on - strand at 148.651 kb on - strand at 148.658 kb on + strand at 148.658 kb on + strand at 148.658 kb on + strand at 148.658 kb on + strand at 148.658 kb on + strand at 148.658 kb on + strand at 148.658 kb on + strand at 148.658 kb on + strand at 148.658 kb on + strand at 148.659 kb on - strand at 148.659 kb on - strand at 148.659 kb on - strand at 148.659 kb on - strand at 148.659 kb on - strand at 148.659 kb on - strand at 148.659 kb on - strand at 148.659 kb on - strand at 148.659 kb on - strand at 148.659 kb on - strand at 148.659 kb on - strand at 148.689 kb on + strand at 148.689 kb on + strand at 148.689 kb on + strand at 148.689 kb on + strand at 148.860 kb on - strand, within MPMX19_06380 at 148.860 kb on - strand, within MPMX19_06380 at 148.860 kb on - strand, within MPMX19_06380 at 148.964 kb on + strand, within MPMX19_06380 at 148.964 kb on + strand, within MPMX19_06380 at 148.965 kb on - strand, within MPMX19_06380 at 148.965 kb on - strand, within MPMX19_06380 at 148.965 kb on - strand, within MPMX19_06380 at 148.965 kb on - strand, within MPMX19_06380 at 148.965 kb on - strand, within MPMX19_06380 at 148.965 kb on - strand, within MPMX19_06380 at 148.966 kb on + strand, within MPMX19_06380 at 148.966 kb on + strand, within MPMX19_06380 at 148.966 kb on + strand, within MPMX19_06380 at 148.966 kb on + strand, within MPMX19_06380 at 148.966 kb on + strand, within MPMX19_06380 at 148.967 kb on - strand, within MPMX19_06380 at 148.967 kb on - strand, within MPMX19_06380 at 148.967 kb on - strand, within MPMX19_06380 at 148.967 kb on - strand, within MPMX19_06380 at 149.048 kb on + strand, within MPMX19_06380 at 149.048 kb on + strand, within MPMX19_06380 at 149.048 kb on + strand, within MPMX19_06380 at 149.048 kb on + strand, within MPMX19_06380 at 149.048 kb on + strand, within MPMX19_06380 at 149.048 kb on + strand, within MPMX19_06380 at 149.049 kb on - strand, within MPMX19_06380 at 149.049 kb on - strand, within MPMX19_06380 at 149.049 kb on - strand, within MPMX19_06380 at 149.049 kb on - strand, within MPMX19_06380 at 149.049 kb on - strand, within MPMX19_06380 at 149.049 kb on - strand, within MPMX19_06380 at 149.078 kb on + strand, within MPMX19_06380 at 149.078 kb on + strand, within MPMX19_06380 at 149.079 kb on - strand, within MPMX19_06380 at 149.234 kb on + strand at 149.234 kb on + strand at 149.235 kb on - strand at 149.235 kb on - strand at 149.235 kb on - strand at 149.318 kb on + strand at 149.319 kb on - strand at 149.371 kb on - strand at 149.375 kb on + strand at 149.389 kb on + strand at 149.453 kb on + strand at 149.453 kb on + strand at 149.461 kb on + strand at 149.483 kb on + strand at 149.483 kb on + strand at 149.483 kb on + strand at 149.483 kb on + strand at 149.484 kb on - strand at 149.666 kb on + strand at 149.666 kb on + strand at 149.666 kb on + strand at 150.009 kb on - strand, within MPMX19_06381 at 150.009 kb on - strand, within MPMX19_06381
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 147,717 + MPMX19_06378 0.46 +0.7 147,717 + MPMX19_06378 0.46 -1.0 147,766 + MPMX19_06378 0.54 +0.5 147,767 - MPMX19_06378 0.54 -0.6 147,767 - MPMX19_06378 0.54 +0.7 147,767 - MPMX19_06378 0.54 +1.1 147,997 + MPMX19_06378 0.90 -0.3 147,997 + MPMX19_06378 0.90 -0.6 147,997 + MPMX19_06378 0.90 -0.5 147,997 + MPMX19_06378 0.90 +0.7 147,997 + MPMX19_06378 0.90 -1.2 147,997 + MPMX19_06378 0.90 -1.3 147,997 + MPMX19_06378 0.90 -0.7 147,998 - MPMX19_06378 0.90 -0.4 147,998 - MPMX19_06378 0.90 -1.1 147,998 - MPMX19_06378 0.90 -2.8 147,998 - MPMX19_06378 0.90 +1.7 147,998 - MPMX19_06378 0.90 -0.5 147,998 - MPMX19_06378 0.90 +0.1 147,998 - MPMX19_06378 0.90 +0.1 147,998 - MPMX19_06378 0.90 -0.3 147,998 - MPMX19_06378 0.90 +0.6 147,998 - MPMX19_06378 0.90 -0.1 147,998 - MPMX19_06378 0.90 -0.3 147,998 - MPMX19_06378 0.90 -2.0 147,998 - MPMX19_06378 0.90 -0.7 148,115 + -0.4 148,115 + -0.9 148,115 + -2.3 148,115 + +0.1 148,115 + -0.8 148,115 + -0.1 148,115 + -0.8 148,115 + +0.5 148,115 + +0.8 148,115 + +1.3 148,115 + +0.2 148,115 + +1.8 148,115 + -0.4 148,116 - +0.3 148,116 - -0.2 148,116 - +1.7 148,116 - -0.3 148,116 - -0.2 148,116 - -0.5 148,116 - -0.8 148,116 - +1.7 148,116 - +1.3 148,116 - +0.5 148,270 + MPMX19_06379 0.31 -2.2 148,270 + MPMX19_06379 0.31 +0.2 148,270 + MPMX19_06379 0.31 -1.0 148,271 - MPMX19_06379 0.31 -2.2 148,271 - MPMX19_06379 0.31 +0.4 148,512 + MPMX19_06379 0.84 -0.6 148,512 + MPMX19_06379 0.84 +0.0 148,512 + MPMX19_06379 0.84 -0.0 148,513 - MPMX19_06379 0.84 -0.7 148,648 + +0.7 148,648 + +0.1 148,648 + -1.7 148,648 + -0.7 148,649 - -1.9 148,649 - +0.5 148,649 - -0.6 148,649 - -1.3 148,650 + -0.6 148,650 + -1.4 148,650 + -0.0 148,650 + +0.1 148,650 + +0.1 148,650 + +0.1 148,650 + -0.5 148,650 + +0.3 148,650 + -0.5 148,650 + -1.3 148,650 + -1.1 148,650 + +1.3 148,650 + -0.2 148,651 - -0.6 148,651 - -0.5 148,651 - -1.0 148,651 - +0.2 148,651 - -0.7 148,651 - -0.9 148,651 - -0.2 148,651 - +0.1 148,651 - -0.1 148,658 + -0.0 148,658 + +1.8 148,658 + +1.9 148,658 + +0.8 148,658 + -0.2 148,658 + -0.2 148,658 + +0.3 148,658 + +0.3 148,658 + -0.8 148,659 - +0.9 148,659 - -0.5 148,659 - -0.1 148,659 - -0.9 148,659 - -0.5 148,659 - -0.3 148,659 - -0.9 148,659 - +0.5 148,659 - +0.1 148,659 - +1.4 148,659 - -1.3 148,689 + -0.7 148,689 + -0.2 148,689 + -1.2 148,689 + -0.3 148,860 - MPMX19_06380 0.30 -0.5 148,860 - MPMX19_06380 0.30 +0.7 148,860 - MPMX19_06380 0.30 -0.5 148,964 + MPMX19_06380 0.50 +0.3 148,964 + MPMX19_06380 0.50 +0.2 148,965 - MPMX19_06380 0.50 -2.3 148,965 - MPMX19_06380 0.50 +1.7 148,965 - MPMX19_06380 0.50 -0.2 148,965 - MPMX19_06380 0.50 -0.2 148,965 - MPMX19_06380 0.50 +0.7 148,965 - MPMX19_06380 0.50 +0.1 148,966 + MPMX19_06380 0.51 +1.0 148,966 + MPMX19_06380 0.51 -1.0 148,966 + MPMX19_06380 0.51 -1.7 148,966 + MPMX19_06380 0.51 -0.3 148,966 + MPMX19_06380 0.51 -0.8 148,967 - MPMX19_06380 0.51 +1.1 148,967 - MPMX19_06380 0.51 +0.7 148,967 - MPMX19_06380 0.51 -0.4 148,967 - MPMX19_06380 0.51 -0.7 149,048 + MPMX19_06380 0.67 -0.6 149,048 + MPMX19_06380 0.67 -1.0 149,048 + MPMX19_06380 0.67 -0.2 149,048 + MPMX19_06380 0.67 -0.2 149,048 + MPMX19_06380 0.67 -0.2 149,048 + MPMX19_06380 0.67 -0.3 149,049 - MPMX19_06380 0.67 +0.4 149,049 - MPMX19_06380 0.67 -2.6 149,049 - MPMX19_06380 0.67 -0.2 149,049 - MPMX19_06380 0.67 +0.7 149,049 - MPMX19_06380 0.67 +1.1 149,049 - MPMX19_06380 0.67 -0.9 149,078 + MPMX19_06380 0.73 -1.3 149,078 + MPMX19_06380 0.73 -1.1 149,079 - MPMX19_06380 0.73 -1.6 149,234 + -0.3 149,234 + -0.3 149,235 - +0.7 149,235 - -1.8 149,235 - -0.0 149,318 + -1.3 149,319 - -0.3 149,371 - -0.1 149,375 + -1.2 149,389 + -1.2 149,453 + -1.3 149,453 + +1.1 149,461 + -0.3 149,483 + -0.1 149,483 + +0.3 149,483 + -1.0 149,483 + -1.6 149,484 - +0.2 149,666 + -1.2 149,666 + +1.2 149,666 + -0.1 150,009 - MPMX19_06381 0.64 +0.1 150,009 - MPMX19_06381 0.64 -1.0
Or see this region's nucleotide sequence