Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06243 and MPMX19_06244 are separated by 106 nucleotides MPMX19_06244 and MPMX19_06245 are separated by 98 nucleotides
MPMX19_06243: MPMX19_06243 - HTH-type transcriptional regulator PgrR, at 434,276 to 435,175
_06243
MPMX19_06244: MPMX19_06244 - 3-succinoylsemialdehyde-pyridine dehydrogenase, at 435,282 to 436,715
_06244
MPMX19_06245: MPMX19_06245 - Nucleoid occlusion protein, at 436,814 to 437,731
_06245
Position (kb) 435
436
437 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 434.352 kb on + strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.353 kb on - strand at 434.355 kb on + strand at 434.355 kb on + strand at 434.355 kb on + strand at 434.355 kb on + strand at 434.356 kb on - strand at 434.356 kb on - strand at 434.451 kb on + strand, within MPMX19_06243 at 434.451 kb on + strand, within MPMX19_06243 at 434.451 kb on + strand, within MPMX19_06243 at 434.451 kb on + strand, within MPMX19_06243 at 434.452 kb on - strand, within MPMX19_06243 at 434.452 kb on - strand, within MPMX19_06243 at 434.569 kb on - strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.655 kb on + strand, within MPMX19_06243 at 434.656 kb on - strand, within MPMX19_06243 at 434.656 kb on - strand, within MPMX19_06243 at 434.656 kb on - strand, within MPMX19_06243 at 434.829 kb on + strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 434.830 kb on - strand, within MPMX19_06243 at 435.217 kb on + strand at 435.217 kb on + strand at 435.217 kb on + strand at 435.217 kb on + strand at 435.218 kb on - strand at 435.218 kb on - strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.303 kb on + strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.304 kb on - strand at 435.305 kb on + strand at 435.555 kb on + strand, within MPMX19_06244 at 435.555 kb on + strand, within MPMX19_06244 at 435.555 kb on + strand, within MPMX19_06244 at 435.555 kb on + strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.556 kb on - strand, within MPMX19_06244 at 435.639 kb on + strand, within MPMX19_06244 at 435.639 kb on + strand, within MPMX19_06244 at 435.639 kb on + strand, within MPMX19_06244 at 435.640 kb on - strand, within MPMX19_06244 at 435.640 kb on - strand, within MPMX19_06244 at 435.640 kb on - strand, within MPMX19_06244 at 436.275 kb on + strand, within MPMX19_06244 at 436.275 kb on + strand, within MPMX19_06244 at 436.275 kb on + strand, within MPMX19_06244 at 436.275 kb on + strand, within MPMX19_06244 at 436.275 kb on + strand, within MPMX19_06244 at 436.276 kb on - strand, within MPMX19_06244 at 436.276 kb on - strand, within MPMX19_06244 at 436.455 kb on + strand, within MPMX19_06244 at 436.500 kb on + strand, within MPMX19_06244 at 436.500 kb on + strand, within MPMX19_06244 at 436.500 kb on + strand, within MPMX19_06244 at 436.501 kb on - strand, within MPMX19_06244 at 436.515 kb on + strand, within MPMX19_06244 at 436.515 kb on + strand, within MPMX19_06244 at 436.515 kb on + strand, within MPMX19_06244 at 436.515 kb on + strand, within MPMX19_06244 at 436.515 kb on + strand, within MPMX19_06244 at 436.515 kb on + strand, within MPMX19_06244 at 436.515 kb on + strand, within MPMX19_06244 at 436.515 kb on + strand, within MPMX19_06244 at 436.516 kb on - strand, within MPMX19_06244 at 436.516 kb on - strand, within MPMX19_06244 at 436.516 kb on - strand, within MPMX19_06244 at 436.516 kb on - strand, within MPMX19_06244 at 436.516 kb on - strand, within MPMX19_06244 at 436.516 kb on - strand, within MPMX19_06244 at 436.516 kb on - strand, within MPMX19_06244 at 436.516 kb on - strand, within MPMX19_06244 at 436.516 kb on - strand, within MPMX19_06244 at 436.516 kb on - strand, within MPMX19_06244 at 436.653 kb on + strand at 436.654 kb on - strand at 436.713 kb on + strand at 436.713 kb on + strand at 436.815 kb on + strand at 436.815 kb on + strand at 436.815 kb on + strand at 436.815 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 434,352 + +0.1 434,353 - -0.9 434,353 - -0.3 434,353 - +0.9 434,353 - -0.0 434,353 - +0.0 434,353 - +1.0 434,353 - -2.0 434,355 + -1.0 434,355 + -0.0 434,355 + -0.7 434,355 + -0.8 434,356 - -1.6 434,356 - +0.4 434,451 + MPMX19_06243 0.19 -1.5 434,451 + MPMX19_06243 0.19 -0.1 434,451 + MPMX19_06243 0.19 -1.3 434,451 + MPMX19_06243 0.19 -1.3 434,452 - MPMX19_06243 0.20 +1.3 434,452 - MPMX19_06243 0.20 -1.6 434,569 - MPMX19_06243 0.33 +0.4 434,655 + MPMX19_06243 0.42 +2.1 434,655 + MPMX19_06243 0.42 +0.3 434,655 + MPMX19_06243 0.42 +0.2 434,655 + MPMX19_06243 0.42 -1.4 434,655 + MPMX19_06243 0.42 +0.7 434,655 + MPMX19_06243 0.42 -0.2 434,656 - MPMX19_06243 0.42 +0.0 434,656 - MPMX19_06243 0.42 +0.3 434,656 - MPMX19_06243 0.42 -0.0 434,829 + MPMX19_06243 0.61 +0.1 434,830 - MPMX19_06243 0.62 +0.7 434,830 - MPMX19_06243 0.62 +0.1 434,830 - MPMX19_06243 0.62 -0.3 434,830 - MPMX19_06243 0.62 -0.8 434,830 - MPMX19_06243 0.62 +0.5 434,830 - MPMX19_06243 0.62 -2.0 434,830 - MPMX19_06243 0.62 -0.0 435,217 + -0.1 435,217 + +0.2 435,217 + -1.5 435,217 + +0.1 435,218 - -0.4 435,218 - +0.2 435,303 + -0.3 435,303 + +0.9 435,303 + -1.0 435,303 + -1.1 435,303 + -0.6 435,303 + -1.1 435,303 + -0.6 435,303 + -0.0 435,303 + +1.0 435,303 + +0.7 435,303 + -0.8 435,303 + +0.0 435,303 + -1.9 435,303 + -0.2 435,303 + -0.3 435,303 + -1.5 435,303 + -2.2 435,303 + -1.8 435,304 - -1.5 435,304 - -1.3 435,304 - +0.2 435,304 - -2.7 435,304 - -1.3 435,304 - -2.5 435,304 - -0.6 435,304 - -0.5 435,304 - +0.2 435,304 - -0.6 435,304 - +0.1 435,304 - -2.5 435,304 - -0.0 435,304 - -1.6 435,304 - +1.2 435,304 - -0.4 435,304 - +0.1 435,304 - +0.1 435,304 - -3.5 435,305 + +0.1 435,555 + MPMX19_06244 0.19 -0.5 435,555 + MPMX19_06244 0.19 +0.2 435,555 + MPMX19_06244 0.19 +1.1 435,555 + MPMX19_06244 0.19 -1.9 435,556 - MPMX19_06244 0.19 +0.5 435,556 - MPMX19_06244 0.19 -0.5 435,556 - MPMX19_06244 0.19 +0.3 435,556 - MPMX19_06244 0.19 +0.5 435,639 + MPMX19_06244 0.25 -2.3 435,639 + MPMX19_06244 0.25 +0.5 435,639 + MPMX19_06244 0.25 +0.4 435,640 - MPMX19_06244 0.25 -0.5 435,640 - MPMX19_06244 0.25 -3.2 435,640 - MPMX19_06244 0.25 +0.1 436,275 + MPMX19_06244 0.69 +0.4 436,275 + MPMX19_06244 0.69 -0.8 436,275 + MPMX19_06244 0.69 -2.3 436,275 + MPMX19_06244 0.69 -1.0 436,275 + MPMX19_06244 0.69 -1.6 436,276 - MPMX19_06244 0.69 +0.5 436,276 - MPMX19_06244 0.69 -0.8 436,455 + MPMX19_06244 0.82 +1.5 436,500 + MPMX19_06244 0.85 +1.5 436,500 + MPMX19_06244 0.85 +0.9 436,500 + MPMX19_06244 0.85 +0.1 436,501 - MPMX19_06244 0.85 -0.5 436,515 + MPMX19_06244 0.86 -1.4 436,515 + MPMX19_06244 0.86 -0.0 436,515 + MPMX19_06244 0.86 -0.2 436,515 + MPMX19_06244 0.86 -0.1 436,515 + MPMX19_06244 0.86 -1.0 436,515 + MPMX19_06244 0.86 +0.2 436,515 + MPMX19_06244 0.86 -1.8 436,515 + MPMX19_06244 0.86 -0.5 436,516 - MPMX19_06244 0.86 +1.3 436,516 - MPMX19_06244 0.86 -0.4 436,516 - MPMX19_06244 0.86 +1.4 436,516 - MPMX19_06244 0.86 -0.6 436,516 - MPMX19_06244 0.86 -0.9 436,516 - MPMX19_06244 0.86 +0.3 436,516 - MPMX19_06244 0.86 -0.1 436,516 - MPMX19_06244 0.86 -2.3 436,516 - MPMX19_06244 0.86 -0.1 436,516 - MPMX19_06244 0.86 -1.7 436,653 + -1.6 436,654 - +1.5 436,713 + -0.3 436,713 + -0.7 436,815 + -0.1 436,815 + -1.0 436,815 + +0.8 436,815 + +0.9
Or see this region's nucleotide sequence