Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06039 and MPMX19_06040 are separated by 48 nucleotides MPMX19_06040 and MPMX19_06041 overlap by 4 nucleotides MPMX19_06041 and MPMX19_06042 overlap by 20 nucleotides
MPMX19_06039: MPMX19_06039 - Putative multidrug export ATP-binding/permease protein, at 196,018 to 197,826
_06039
MPMX19_06040: MPMX19_06040 - Phyllosphere-induced regulator PhyR, at 197,875 to 198,276
_06040
MPMX19_06041: MPMX19_06041 - hypothetical protein, at 198,273 to 200,168
_06041
MPMX19_06042: MPMX19_06042 - hypothetical protein, at 200,149 to 200,811
_06042
Position (kb) 198
199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.368 kb on + strand, within MPMX19_06039 at 197.368 kb on + strand, within MPMX19_06039 at 197.369 kb on - strand, within MPMX19_06039 at 197.369 kb on - strand, within MPMX19_06039 at 197.458 kb on + strand, within MPMX19_06039 at 197.468 kb on + strand, within MPMX19_06039 at 197.767 kb on + strand at 197.824 kb on + strand at 197.824 kb on + strand at 197.824 kb on + strand at 197.824 kb on + strand at 197.824 kb on + strand at 197.824 kb on + strand at 197.824 kb on + strand at 197.824 kb on + strand at 197.825 kb on - strand at 197.825 kb on - strand at 197.825 kb on - strand at 197.825 kb on - strand at 197.825 kb on - strand at 197.825 kb on - strand at 197.825 kb on - strand at 197.844 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.865 kb on + strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 197.866 kb on - strand at 198.103 kb on - strand, within MPMX19_06040 at 198.118 kb on + strand, within MPMX19_06040 at 198.118 kb on + strand, within MPMX19_06040 at 198.118 kb on + strand, within MPMX19_06040 at 198.118 kb on + strand, within MPMX19_06040 at 198.118 kb on + strand, within MPMX19_06040 at 198.118 kb on + strand, within MPMX19_06040 at 198.118 kb on + strand, within MPMX19_06040 at 198.118 kb on + strand, within MPMX19_06040 at 198.118 kb on + strand, within MPMX19_06040 at 198.118 kb on + strand, within MPMX19_06040 at 198.119 kb on - strand, within MPMX19_06040 at 198.119 kb on - strand, within MPMX19_06040 at 198.119 kb on - strand, within MPMX19_06040 at 198.119 kb on - strand, within MPMX19_06040 at 198.119 kb on - strand, within MPMX19_06040 at 198.119 kb on - strand, within MPMX19_06040 at 198.119 kb on - strand, within MPMX19_06040 at 198.119 kb on - strand, within MPMX19_06040 at 198.119 kb on - strand, within MPMX19_06040 at 198.119 kb on - strand, within MPMX19_06040 at 198.119 kb on - strand, within MPMX19_06040 at 198.221 kb on + strand, within MPMX19_06040 at 198.221 kb on + strand, within MPMX19_06040 at 198.221 kb on + strand, within MPMX19_06040 at 198.221 kb on + strand, within MPMX19_06040 at 198.221 kb on + strand, within MPMX19_06040 at 198.221 kb on + strand, within MPMX19_06040 at 198.221 kb on + strand, within MPMX19_06040 at 198.221 kb on + strand, within MPMX19_06040 at 198.222 kb on - strand, within MPMX19_06040 at 198.222 kb on - strand, within MPMX19_06040 at 198.222 kb on - strand, within MPMX19_06040 at 198.706 kb on + strand, within MPMX19_06041 at 198.706 kb on + strand, within MPMX19_06041 at 198.707 kb on - strand, within MPMX19_06041 at 198.707 kb on - strand, within MPMX19_06041 at 198.746 kb on - strand, within MPMX19_06041 at 198.746 kb on - strand, within MPMX19_06041 at 198.746 kb on - strand, within MPMX19_06041 at 198.746 kb on - strand, within MPMX19_06041 at 198.858 kb on + strand, within MPMX19_06041 at 198.859 kb on - strand, within MPMX19_06041 at 199.054 kb on + strand, within MPMX19_06041 at 199.054 kb on + strand, within MPMX19_06041 at 199.054 kb on + strand, within MPMX19_06041 at 199.054 kb on + strand, within MPMX19_06041 at 199.054 kb on + strand, within MPMX19_06041 at 199.054 kb on + strand, within MPMX19_06041 at 199.054 kb on + strand, within MPMX19_06041 at 199.054 kb on + strand, within MPMX19_06041 at 199.055 kb on - strand, within MPMX19_06041 at 199.055 kb on - strand, within MPMX19_06041 at 199.055 kb on - strand, within MPMX19_06041 at 199.055 kb on - strand, within MPMX19_06041 at 199.055 kb on - strand, within MPMX19_06041 at 199.055 kb on - strand, within MPMX19_06041 at 199.162 kb on + strand, within MPMX19_06041 at 199.162 kb on + strand, within MPMX19_06041 at 199.162 kb on + strand, within MPMX19_06041 at 199.163 kb on - strand, within MPMX19_06041 at 199.499 kb on + strand, within MPMX19_06041 at 199.609 kb on + strand, within MPMX19_06041 at 200.068 kb on + strand at 200.068 kb on + strand at 200.068 kb on + strand at 200.068 kb on + strand at 200.069 kb on - strand at 200.069 kb on - strand at 200.279 kb on + strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.280 kb on - strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.318 kb on + strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.319 kb on - strand, within MPMX19_06042 at 200.760 kb on + strand at 200.760 kb on + strand at 200.760 kb on + strand at 200.760 kb on + strand at 200.760 kb on + strand at 200.760 kb on + strand at 200.761 kb on - strand at 200.885 kb on + strand at 200.886 kb on - strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.920 kb on + strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.921 kb on - strand at 200.925 kb on + strand at 200.925 kb on + strand at 200.925 kb on + strand at 200.950 kb on + strand at 200.950 kb on + strand at 200.950 kb on + strand at 200.951 kb on - strand at 200.951 kb on - strand at 200.951 kb on - strand at 201.045 kb on - strand at 201.045 kb on - strand at 201.045 kb on - strand at 201.065 kb on - strand at 201.065 kb on - strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.157 kb on + strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.158 kb on - strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.159 kb on + strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand at 201.160 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 197,368 + MPMX19_06039 0.75 +2.0 197,368 + MPMX19_06039 0.75 -0.5 197,369 - MPMX19_06039 0.75 -0.6 197,369 - MPMX19_06039 0.75 +0.1 197,458 + MPMX19_06039 0.80 +0.0 197,468 + MPMX19_06039 0.80 -0.2 197,767 + -0.6 197,824 + -0.6 197,824 + -0.3 197,824 + +0.3 197,824 + -0.4 197,824 + +0.7 197,824 + -1.5 197,824 + +1.0 197,824 + -0.7 197,825 - -0.2 197,825 - -0.3 197,825 - -1.7 197,825 - -2.2 197,825 - -0.0 197,825 - -0.8 197,825 - -0.7 197,844 + -0.9 197,865 + -0.1 197,865 + -1.8 197,865 + -0.3 197,865 + +1.4 197,865 + +0.6 197,865 + +1.0 197,865 + -0.6 197,865 + -0.4 197,865 + -1.5 197,865 + -0.3 197,865 + -0.3 197,865 + +0.6 197,865 + +0.8 197,865 + +0.2 197,865 + -0.4 197,865 + -1.0 197,865 + -0.0 197,865 + -2.4 197,865 + -0.0 197,865 + -1.5 197,865 + +1.3 197,865 + -1.0 197,865 + -0.1 197,865 + +0.2 197,865 + +2.1 197,866 - -0.1 197,866 - -0.3 197,866 - -1.3 197,866 - +0.3 197,866 - +0.1 197,866 - -0.4 197,866 - +0.1 197,866 - +0.0 197,866 - -1.0 197,866 - +0.9 197,866 - -1.8 197,866 - +0.3 197,866 - +1.3 197,866 - -1.1 197,866 - -1.6 197,866 - +1.4 197,866 - +0.1 197,866 - -0.1 197,866 - +0.8 197,866 - -0.7 197,866 - +0.4 198,103 - MPMX19_06040 0.57 +0.4 198,118 + MPMX19_06040 0.60 +0.6 198,118 + MPMX19_06040 0.60 +0.8 198,118 + MPMX19_06040 0.60 +0.5 198,118 + MPMX19_06040 0.60 +0.6 198,118 + MPMX19_06040 0.60 -1.4 198,118 + MPMX19_06040 0.60 -0.5 198,118 + MPMX19_06040 0.60 -0.5 198,118 + MPMX19_06040 0.60 +1.1 198,118 + MPMX19_06040 0.60 -1.3 198,118 + MPMX19_06040 0.60 +0.6 198,119 - MPMX19_06040 0.61 +0.3 198,119 - MPMX19_06040 0.61 +0.8 198,119 - MPMX19_06040 0.61 -0.3 198,119 - MPMX19_06040 0.61 +0.1 198,119 - MPMX19_06040 0.61 -1.4 198,119 - MPMX19_06040 0.61 +0.2 198,119 - MPMX19_06040 0.61 +0.3 198,119 - MPMX19_06040 0.61 +0.2 198,119 - MPMX19_06040 0.61 +1.1 198,119 - MPMX19_06040 0.61 -0.2 198,119 - MPMX19_06040 0.61 -1.2 198,221 + MPMX19_06040 0.86 +0.9 198,221 + MPMX19_06040 0.86 -0.7 198,221 + MPMX19_06040 0.86 -1.0 198,221 + MPMX19_06040 0.86 +0.7 198,221 + MPMX19_06040 0.86 +0.3 198,221 + MPMX19_06040 0.86 +0.8 198,221 + MPMX19_06040 0.86 -0.0 198,221 + MPMX19_06040 0.86 -1.8 198,222 - MPMX19_06040 0.86 -0.3 198,222 - MPMX19_06040 0.86 -0.3 198,222 - MPMX19_06040 0.86 -0.0 198,706 + MPMX19_06041 0.23 +1.0 198,706 + MPMX19_06041 0.23 -2.9 198,707 - MPMX19_06041 0.23 -0.6 198,707 - MPMX19_06041 0.23 +0.3 198,746 - MPMX19_06041 0.25 -0.1 198,746 - MPMX19_06041 0.25 +0.6 198,746 - MPMX19_06041 0.25 -0.8 198,746 - MPMX19_06041 0.25 +1.3 198,858 + MPMX19_06041 0.31 -0.8 198,859 - MPMX19_06041 0.31 -0.3 199,054 + MPMX19_06041 0.41 -0.0 199,054 + MPMX19_06041 0.41 -0.2 199,054 + MPMX19_06041 0.41 -0.8 199,054 + MPMX19_06041 0.41 -1.4 199,054 + MPMX19_06041 0.41 -1.3 199,054 + MPMX19_06041 0.41 -0.6 199,054 + MPMX19_06041 0.41 +0.7 199,054 + MPMX19_06041 0.41 -0.4 199,055 - MPMX19_06041 0.41 -0.4 199,055 - MPMX19_06041 0.41 +1.2 199,055 - MPMX19_06041 0.41 -0.7 199,055 - MPMX19_06041 0.41 -0.8 199,055 - MPMX19_06041 0.41 -2.4 199,055 - MPMX19_06041 0.41 +1.3 199,162 + MPMX19_06041 0.47 -1.6 199,162 + MPMX19_06041 0.47 +0.4 199,162 + MPMX19_06041 0.47 +0.5 199,163 - MPMX19_06041 0.47 -0.9 199,499 + MPMX19_06041 0.65 +0.6 199,609 + MPMX19_06041 0.70 +0.1 200,068 + +1.3 200,068 + +1.0 200,068 + -1.3 200,068 + -1.1 200,069 - +0.2 200,069 - +0.3 200,279 + MPMX19_06042 0.20 -0.2 200,280 - MPMX19_06042 0.20 -0.8 200,280 - MPMX19_06042 0.20 -0.4 200,280 - MPMX19_06042 0.20 +0.7 200,280 - MPMX19_06042 0.20 -1.9 200,280 - MPMX19_06042 0.20 -1.0 200,280 - MPMX19_06042 0.20 -1.6 200,280 - MPMX19_06042 0.20 -0.0 200,280 - MPMX19_06042 0.20 -0.0 200,280 - MPMX19_06042 0.20 +0.3 200,280 - MPMX19_06042 0.20 +0.9 200,280 - MPMX19_06042 0.20 +0.1 200,318 + MPMX19_06042 0.25 -0.9 200,318 + MPMX19_06042 0.25 +0.0 200,318 + MPMX19_06042 0.25 +1.0 200,318 + MPMX19_06042 0.25 +1.1 200,318 + MPMX19_06042 0.25 +1.2 200,318 + MPMX19_06042 0.25 +1.3 200,318 + MPMX19_06042 0.25 +0.6 200,319 - MPMX19_06042 0.26 -0.1 200,319 - MPMX19_06042 0.26 -1.0 200,319 - MPMX19_06042 0.26 -0.1 200,319 - MPMX19_06042 0.26 -1.9 200,319 - MPMX19_06042 0.26 -0.0 200,319 - MPMX19_06042 0.26 -0.4 200,319 - MPMX19_06042 0.26 +0.1 200,760 + -2.0 200,760 + +0.6 200,760 + +0.6 200,760 + -2.1 200,760 + -0.8 200,760 + +0.5 200,761 - -0.3 200,885 + -1.1 200,886 - -1.0 200,920 + -0.8 200,920 + -1.6 200,920 + -1.4 200,920 + -1.6 200,920 + +0.6 200,920 + -0.2 200,920 + -0.1 200,920 + -0.0 200,920 + +0.4 200,920 + -0.0 200,920 + -0.1 200,920 + -0.6 200,920 + +0.6 200,921 - +0.3 200,921 - -1.4 200,921 - -1.0 200,921 - -2.1 200,921 - +0.3 200,921 - -1.0 200,921 - -0.4 200,921 - -1.5 200,921 - -1.4 200,921 - -0.3 200,921 - -1.3 200,921 - -1.3 200,921 - -2.7 200,921 - +1.3 200,921 - +0.7 200,921 - +0.6 200,921 - -1.1 200,921 - -0.6 200,925 + +0.6 200,925 + -1.4 200,925 + +0.6 200,950 + +0.8 200,950 + +0.6 200,950 + +0.6 200,951 - -0.2 200,951 - +0.4 200,951 - -0.6 201,045 - -0.1 201,045 - +0.2 201,045 - -1.4 201,065 - -1.8 201,065 - -1.3 201,157 + +0.4 201,157 + -0.7 201,157 + +0.6 201,157 + +0.8 201,157 + -0.4 201,157 + -0.2 201,157 + -0.9 201,157 + -0.9 201,157 + +0.4 201,157 + +0.1 201,157 + +1.6 201,157 + +1.3 201,157 + -1.7 201,157 + -0.1 201,157 + -1.0 201,157 + -0.0 201,157 + +1.4 201,157 + +1.1 201,157 + -1.6 201,157 + -1.3 201,157 + +0.7 201,158 - +0.3 201,158 - +0.1 201,158 - -0.9 201,158 - -1.4 201,158 - -0.4 201,158 - -1.8 201,158 - -0.4 201,158 - -1.7 201,158 - -0.4 201,158 - -0.4 201,158 - +0.1 201,158 - -2.5 201,158 - -0.9 201,158 - -2.1 201,158 - +0.1 201,158 - +0.7 201,158 - +0.2 201,158 - +0.3 201,158 - -1.0 201,158 - -1.3 201,158 - -0.8 201,158 - -0.6 201,159 + +1.0 201,159 + -0.3 201,159 + +0.1 201,159 + -1.0 201,159 + -0.3 201,159 + +0.8 201,159 + -1.3 201,159 + -1.1 201,159 + +0.2 201,159 + +0.6 201,159 + +0.6 201,159 + -0.7 201,159 + -1.1 201,159 + -0.4 201,159 + +0.9 201,160 - -0.3 201,160 - -1.3 201,160 - -0.2 201,160 - +1.6 201,160 - +0.4 201,160 - -1.3 201,160 - -2.5 201,160 - -0.4 201,160 - -0.4 201,160 - +1.6 201,160 - -1.5 201,160 - -2.6 201,160 - -1.0 201,160 - -0.4 201,160 - -0.6
Or see this region's nucleotide sequence