Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05306 and MPMX19_05307 are separated by 325 nucleotides MPMX19_05307 and MPMX19_05308 are separated by 105 nucleotides MPMX19_05308 and MPMX19_05309 are separated by 55 nucleotides
MPMX19_05306: MPMX19_05306 - RCS-specific HTH-type transcriptional activator RclR, at 841,839 to 842,753
_05306
MPMX19_05307: MPMX19_05307 - hypothetical protein, at 843,079 to 844,722
_05307
MPMX19_05308: MPMX19_05308 - Nucleoside triphosphate pyrophosphohydrolase, at 844,828 to 845,637
_05308
MPMX19_05309: MPMX19_05309 - 4,4'-diaponeurosporenoate glycosyltransferase, at 845,693 to 846,844
_05309
Position (kb) 843
844
845 Strain fitness (log2 ratio) -2
-1
0
1
2 at 842.141 kb on + strand, within MPMX19_05306 at 842.141 kb on + strand, within MPMX19_05306 at 842.142 kb on - strand, within MPMX19_05306 at 842.510 kb on + strand, within MPMX19_05306 at 842.510 kb on + strand, within MPMX19_05306 at 842.510 kb on + strand, within MPMX19_05306 at 842.510 kb on + strand, within MPMX19_05306 at 842.510 kb on + strand, within MPMX19_05306 at 842.511 kb on - strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.571 kb on + strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.572 kb on - strand, within MPMX19_05306 at 842.646 kb on + strand, within MPMX19_05306 at 842.647 kb on - strand, within MPMX19_05306 at 842.690 kb on + strand at 842.690 kb on + strand at 842.691 kb on - strand at 842.691 kb on - strand at 842.795 kb on + strand at 842.874 kb on + strand at 842.874 kb on + strand at 842.874 kb on + strand at 842.875 kb on - strand at 842.875 kb on - strand at 842.884 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.922 kb on + strand at 842.923 kb on - strand at 842.923 kb on - strand at 842.967 kb on + strand at 842.968 kb on - strand at 842.996 kb on - strand at 842.996 kb on - strand at 842.996 kb on - strand at 842.996 kb on - strand at 843.026 kb on + strand at 843.026 kb on + strand at 843.026 kb on + strand at 843.026 kb on + strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.027 kb on - strand at 843.114 kb on + strand at 843.499 kb on + strand, within MPMX19_05307 at 843.499 kb on + strand, within MPMX19_05307 at 843.499 kb on + strand, within MPMX19_05307 at 843.499 kb on + strand, within MPMX19_05307 at 843.499 kb on + strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.500 kb on - strand, within MPMX19_05307 at 843.771 kb on + strand, within MPMX19_05307 at 843.771 kb on + strand, within MPMX19_05307 at 843.771 kb on + strand, within MPMX19_05307 at 843.771 kb on + strand, within MPMX19_05307 at 843.771 kb on + strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 843.772 kb on - strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.186 kb on + strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.187 kb on - strand, within MPMX19_05307 at 844.223 kb on - strand, within MPMX19_05307 at 844.223 kb on - strand, within MPMX19_05307 at 844.613 kb on - strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.630 kb on + strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.631 kb on - strand at 844.684 kb on - strand at 844.720 kb on + strand at 844.720 kb on + strand at 844.720 kb on + strand at 844.720 kb on + strand at 844.720 kb on + strand at 844.721 kb on - strand at 844.721 kb on - strand at 844.721 kb on - strand at 844.721 kb on - strand at 844.721 kb on - strand at 844.734 kb on + strand at 844.734 kb on + strand at 844.735 kb on - strand at 844.735 kb on - strand at 844.784 kb on - strand at 844.915 kb on + strand, within MPMX19_05308 at 844.915 kb on + strand, within MPMX19_05308 at 844.915 kb on + strand, within MPMX19_05308 at 844.915 kb on + strand, within MPMX19_05308 at 844.915 kb on + strand, within MPMX19_05308 at 844.916 kb on - strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.951 kb on + strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 844.952 kb on - strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.032 kb on + strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.033 kb on - strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.035 kb on + strand, within MPMX19_05308 at 845.036 kb on - strand, within MPMX19_05308 at 845.036 kb on - strand, within MPMX19_05308 at 845.036 kb on - strand, within MPMX19_05308 at 845.646 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 842,141 + MPMX19_05306 0.33 +2.1 842,141 + MPMX19_05306 0.33 +0.5 842,142 - MPMX19_05306 0.33 -0.4 842,510 + MPMX19_05306 0.73 -0.5 842,510 + MPMX19_05306 0.73 -1.7 842,510 + MPMX19_05306 0.73 -0.1 842,510 + MPMX19_05306 0.73 -0.5 842,510 + MPMX19_05306 0.73 -0.6 842,511 - MPMX19_05306 0.73 -0.5 842,571 + MPMX19_05306 0.80 -1.7 842,571 + MPMX19_05306 0.80 -0.3 842,571 + MPMX19_05306 0.80 -0.1 842,571 + MPMX19_05306 0.80 -0.6 842,571 + MPMX19_05306 0.80 -0.4 842,571 + MPMX19_05306 0.80 +1.9 842,571 + MPMX19_05306 0.80 +0.0 842,571 + MPMX19_05306 0.80 +0.6 842,571 + MPMX19_05306 0.80 +1.0 842,571 + MPMX19_05306 0.80 +0.9 842,571 + MPMX19_05306 0.80 -1.0 842,571 + MPMX19_05306 0.80 -0.1 842,572 - MPMX19_05306 0.80 +0.1 842,572 - MPMX19_05306 0.80 +0.2 842,572 - MPMX19_05306 0.80 -1.0 842,572 - MPMX19_05306 0.80 -1.6 842,572 - MPMX19_05306 0.80 -0.9 842,572 - MPMX19_05306 0.80 +1.1 842,572 - MPMX19_05306 0.80 -0.2 842,572 - MPMX19_05306 0.80 -2.0 842,572 - MPMX19_05306 0.80 -1.7 842,572 - MPMX19_05306 0.80 +0.9 842,572 - MPMX19_05306 0.80 +0.1 842,572 - MPMX19_05306 0.80 +0.5 842,572 - MPMX19_05306 0.80 +0.0 842,646 + MPMX19_05306 0.88 -0.9 842,647 - MPMX19_05306 0.88 -1.0 842,690 + +0.1 842,690 + +0.3 842,691 - +0.5 842,691 - -0.3 842,795 + -2.2 842,874 + -0.5 842,874 + -0.3 842,874 + -0.9 842,875 - +0.3 842,875 - +0.3 842,884 + -1.2 842,922 + +2.0 842,922 + -1.0 842,922 + -1.2 842,922 + -0.5 842,922 + -1.7 842,922 + -0.4 842,922 + +0.6 842,922 + -0.9 842,923 - -0.8 842,923 - -1.3 842,967 + -1.9 842,968 - -0.9 842,996 - +0.5 842,996 - -0.6 842,996 - +0.4 842,996 - -1.1 843,026 + +1.2 843,026 + -2.6 843,026 + -0.1 843,026 + -0.8 843,027 - -1.7 843,027 - +0.2 843,027 - -0.5 843,027 - +0.2 843,027 - -1.3 843,027 - -0.7 843,027 - -1.1 843,027 - -0.2 843,027 - -1.3 843,027 - +0.8 843,027 - +0.5 843,027 - -0.9 843,027 - +1.2 843,114 + -1.6 843,499 + MPMX19_05307 0.26 -2.0 843,499 + MPMX19_05307 0.26 +0.1 843,499 + MPMX19_05307 0.26 -0.3 843,499 + MPMX19_05307 0.26 +1.2 843,499 + MPMX19_05307 0.26 -1.2 843,500 - MPMX19_05307 0.26 +0.1 843,500 - MPMX19_05307 0.26 -2.0 843,500 - MPMX19_05307 0.26 +0.5 843,500 - MPMX19_05307 0.26 +0.7 843,500 - MPMX19_05307 0.26 +0.2 843,500 - MPMX19_05307 0.26 -0.5 843,500 - MPMX19_05307 0.26 -0.9 843,500 - MPMX19_05307 0.26 +1.1 843,771 + MPMX19_05307 0.42 -0.0 843,771 + MPMX19_05307 0.42 -1.0 843,771 + MPMX19_05307 0.42 +0.7 843,771 + MPMX19_05307 0.42 +0.2 843,771 + MPMX19_05307 0.42 -0.0 843,772 - MPMX19_05307 0.42 +0.1 843,772 - MPMX19_05307 0.42 -1.5 843,772 - MPMX19_05307 0.42 -0.9 843,772 - MPMX19_05307 0.42 +1.3 843,772 - MPMX19_05307 0.42 +0.8 843,772 - MPMX19_05307 0.42 +0.2 843,772 - MPMX19_05307 0.42 -0.1 843,772 - MPMX19_05307 0.42 +1.1 843,772 - MPMX19_05307 0.42 +0.9 844,186 + MPMX19_05307 0.67 +0.7 844,186 + MPMX19_05307 0.67 +0.8 844,186 + MPMX19_05307 0.67 +0.6 844,186 + MPMX19_05307 0.67 +1.0 844,186 + MPMX19_05307 0.67 +0.0 844,186 + MPMX19_05307 0.67 -1.1 844,186 + MPMX19_05307 0.67 -2.2 844,186 + MPMX19_05307 0.67 +0.0 844,186 + MPMX19_05307 0.67 +0.5 844,187 - MPMX19_05307 0.67 -1.2 844,187 - MPMX19_05307 0.67 +0.0 844,187 - MPMX19_05307 0.67 -1.5 844,187 - MPMX19_05307 0.67 -0.5 844,187 - MPMX19_05307 0.67 +0.9 844,187 - MPMX19_05307 0.67 +1.2 844,187 - MPMX19_05307 0.67 -1.4 844,223 - MPMX19_05307 0.70 -1.1 844,223 - MPMX19_05307 0.70 -0.3 844,613 - -1.2 844,630 + +0.0 844,630 + +0.5 844,630 + -0.6 844,630 + -0.4 844,630 + -1.1 844,630 + +0.2 844,630 + +1.1 844,630 + +0.5 844,630 + -0.2 844,630 + -0.9 844,630 + +0.3 844,631 - -0.9 844,631 - -0.5 844,631 - -0.3 844,631 - +0.1 844,631 - -0.4 844,631 - -0.1 844,631 - -0.3 844,631 - -0.3 844,631 - +0.5 844,631 - -0.5 844,684 - +0.5 844,720 + -1.7 844,720 + -1.0 844,720 + -0.9 844,720 + -0.2 844,720 + -0.9 844,721 - +1.0 844,721 - +1.3 844,721 - -0.5 844,721 - -0.2 844,721 - -0.6 844,734 + -1.1 844,734 + +0.0 844,735 - +0.7 844,735 - -0.5 844,784 - +0.6 844,915 + MPMX19_05308 0.11 +0.1 844,915 + MPMX19_05308 0.11 -0.6 844,915 + MPMX19_05308 0.11 -0.9 844,915 + MPMX19_05308 0.11 -2.5 844,915 + MPMX19_05308 0.11 -0.7 844,916 - MPMX19_05308 0.11 +0.6 844,951 + MPMX19_05308 0.15 +1.1 844,951 + MPMX19_05308 0.15 +0.6 844,951 + MPMX19_05308 0.15 -1.2 844,951 + MPMX19_05308 0.15 +2.5 844,951 + MPMX19_05308 0.15 -1.2 844,951 + MPMX19_05308 0.15 +0.5 844,951 + MPMX19_05308 0.15 -1.9 844,951 + MPMX19_05308 0.15 -1.5 844,951 + MPMX19_05308 0.15 -0.9 844,951 + MPMX19_05308 0.15 +0.3 844,952 - MPMX19_05308 0.15 -0.2 844,952 - MPMX19_05308 0.15 +0.4 844,952 - MPMX19_05308 0.15 +0.6 844,952 - MPMX19_05308 0.15 -0.2 844,952 - MPMX19_05308 0.15 +1.1 844,952 - MPMX19_05308 0.15 -0.7 844,952 - MPMX19_05308 0.15 +0.6 844,952 - MPMX19_05308 0.15 +0.1 844,952 - MPMX19_05308 0.15 -0.5 845,032 + MPMX19_05308 0.25 +0.0 845,032 + MPMX19_05308 0.25 -0.7 845,032 + MPMX19_05308 0.25 +0.2 845,032 + MPMX19_05308 0.25 -0.3 845,032 + MPMX19_05308 0.25 -0.3 845,032 + MPMX19_05308 0.25 -0.6 845,032 + MPMX19_05308 0.25 +0.2 845,032 + MPMX19_05308 0.25 -1.1 845,032 + MPMX19_05308 0.25 +1.5 845,033 - MPMX19_05308 0.25 -0.6 845,033 - MPMX19_05308 0.25 +0.3 845,033 - MPMX19_05308 0.25 +0.8 845,033 - MPMX19_05308 0.25 -1.6 845,033 - MPMX19_05308 0.25 -2.1 845,033 - MPMX19_05308 0.25 +2.2 845,033 - MPMX19_05308 0.25 -0.3 845,033 - MPMX19_05308 0.25 +0.1 845,033 - MPMX19_05308 0.25 -0.3 845,033 - MPMX19_05308 0.25 -0.1 845,035 + MPMX19_05308 0.26 +0.9 845,035 + MPMX19_05308 0.26 -1.5 845,035 + MPMX19_05308 0.26 -1.1 845,035 + MPMX19_05308 0.26 -1.6 845,035 + MPMX19_05308 0.26 +0.1 845,035 + MPMX19_05308 0.26 -0.6 845,036 - MPMX19_05308 0.26 -0.2 845,036 - MPMX19_05308 0.26 -1.4 845,036 - MPMX19_05308 0.26 +1.5 845,646 + +0.5
Or see this region's nucleotide sequence