Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05061 and MPMX19_05062 are separated by 336 nucleotides MPMX19_05062 and MPMX19_05063 are separated by 145 nucleotides MPMX19_05063 and MPMX19_05064 are separated by 174 nucleotides MPMX19_05064 and MPMX19_05065 are separated by 1 nucleotides
MPMX19_05061: MPMX19_05061 - hypothetical protein, at 544,886 to 545,275
_05061
MPMX19_05062: MPMX19_05062 - Sulfur carrier protein TusA, at 545,612 to 545,839
_05062
MPMX19_05063: MPMX19_05063 - Histone deacetylase-like amidohydrolase, at 545,985 to 546,974
_05063
MPMX19_05064: MPMX19_05064 - Exodeoxyribonuclease 7 small subunit, at 547,149 to 547,427
_05064
MPMX19_05065: MPMX19_05065 - Farnesyl diphosphate synthase, at 547,429 to 548,331
_05065
Position (kb) 545
546
547 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 544.992 kb on + strand, within MPMX19_05061 at 544.992 kb on + strand, within MPMX19_05061 at 544.993 kb on - strand, within MPMX19_05061 at 544.993 kb on - strand, within MPMX19_05061 at 544.993 kb on - strand, within MPMX19_05061 at 544.993 kb on - strand, within MPMX19_05061 at 544.993 kb on - strand, within MPMX19_05061 at 545.046 kb on + strand, within MPMX19_05061 at 545.046 kb on + strand, within MPMX19_05061 at 545.047 kb on - strand, within MPMX19_05061 at 545.047 kb on - strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.049 kb on + strand, within MPMX19_05061 at 545.050 kb on - strand, within MPMX19_05061 at 545.050 kb on - strand, within MPMX19_05061 at 545.050 kb on - strand, within MPMX19_05061 at 545.050 kb on - strand, within MPMX19_05061 at 545.050 kb on - strand, within MPMX19_05061 at 545.050 kb on - strand, within MPMX19_05061 at 545.050 kb on - strand, within MPMX19_05061 at 545.050 kb on - strand, within MPMX19_05061 at 545.050 kb on - strand, within MPMX19_05061 at 545.050 kb on - strand, within MPMX19_05061 at 545.281 kb on + strand at 545.281 kb on + strand at 545.356 kb on + strand at 545.356 kb on + strand at 545.356 kb on + strand at 545.361 kb on + strand at 545.361 kb on + strand at 545.364 kb on + strand at 545.365 kb on - strand at 545.366 kb on + strand at 545.367 kb on - strand at 545.367 kb on - strand at 545.373 kb on - strand at 545.439 kb on + strand at 545.440 kb on - strand at 545.440 kb on - strand at 545.511 kb on + strand at 545.511 kb on + strand at 545.512 kb on - strand at 545.599 kb on + strand at 545.632 kb on + strand at 545.632 kb on + strand at 545.632 kb on + strand at 545.633 kb on - strand at 545.633 kb on - strand at 545.633 kb on - strand at 545.633 kb on - strand at 545.704 kb on + strand, within MPMX19_05062 at 545.884 kb on - strand at 545.884 kb on - strand at 545.884 kb on - strand at 545.960 kb on + strand at 545.960 kb on + strand at 545.960 kb on + strand at 545.960 kb on + strand at 545.961 kb on - strand at 545.961 kb on - strand at 545.970 kb on - strand at 545.970 kb on - strand at 545.970 kb on - strand at 546.029 kb on - strand at 546.029 kb on - strand at 546.062 kb on + strand at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on + strand, within MPMX19_05063 at 546.585 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.586 kb on - strand, within MPMX19_05063 at 546.612 kb on + strand, within MPMX19_05063 at 546.612 kb on + strand, within MPMX19_05063 at 546.613 kb on - strand, within MPMX19_05063 at 546.613 kb on - strand, within MPMX19_05063 at 546.649 kb on - strand, within MPMX19_05063 at 546.912 kb on + strand at 546.912 kb on + strand at 546.912 kb on + strand at 546.912 kb on + strand at 546.912 kb on + strand at 546.913 kb on - strand at 546.913 kb on - strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.966 kb on + strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 546.967 kb on - strand at 547.022 kb on - strand at 547.039 kb on + strand at 547.039 kb on + strand at 547.039 kb on + strand at 547.040 kb on - strand at 547.040 kb on - strand at 547.040 kb on - strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.061 kb on + strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.062 kb on - strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.122 kb on + strand at 547.302 kb on + strand, within MPMX19_05064 at 547.302 kb on + strand, within MPMX19_05064 at 547.381 kb on + strand, within MPMX19_05064 at 547.381 kb on + strand, within MPMX19_05064 at 547.434 kb on + strand at 547.434 kb on + strand at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065 at 547.681 kb on + strand, within MPMX19_05065
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 544,992 + MPMX19_05061 0.27 -0.1 544,992 + MPMX19_05061 0.27 +1.7 544,993 - MPMX19_05061 0.27 -2.0 544,993 - MPMX19_05061 0.27 +1.0 544,993 - MPMX19_05061 0.27 +0.1 544,993 - MPMX19_05061 0.27 +3.1 544,993 - MPMX19_05061 0.27 -0.3 545,046 + MPMX19_05061 0.41 -1.5 545,046 + MPMX19_05061 0.41 +0.8 545,047 - MPMX19_05061 0.41 -0.1 545,047 - MPMX19_05061 0.41 -0.9 545,049 + MPMX19_05061 0.42 +0.3 545,049 + MPMX19_05061 0.42 +0.8 545,049 + MPMX19_05061 0.42 +0.7 545,049 + MPMX19_05061 0.42 -0.3 545,049 + MPMX19_05061 0.42 -0.5 545,049 + MPMX19_05061 0.42 -2.0 545,049 + MPMX19_05061 0.42 +2.4 545,049 + MPMX19_05061 0.42 -0.8 545,049 + MPMX19_05061 0.42 +0.8 545,049 + MPMX19_05061 0.42 -1.0 545,049 + MPMX19_05061 0.42 -0.7 545,049 + MPMX19_05061 0.42 -2.3 545,049 + MPMX19_05061 0.42 -1.3 545,049 + MPMX19_05061 0.42 -0.6 545,049 + MPMX19_05061 0.42 -1.6 545,049 + MPMX19_05061 0.42 -1.4 545,049 + MPMX19_05061 0.42 -0.8 545,049 + MPMX19_05061 0.42 -0.4 545,050 - MPMX19_05061 0.42 +0.6 545,050 - MPMX19_05061 0.42 -1.1 545,050 - MPMX19_05061 0.42 -0.5 545,050 - MPMX19_05061 0.42 +1.0 545,050 - MPMX19_05061 0.42 +0.3 545,050 - MPMX19_05061 0.42 +0.6 545,050 - MPMX19_05061 0.42 +0.6 545,050 - MPMX19_05061 0.42 +0.4 545,050 - MPMX19_05061 0.42 +0.5 545,050 - MPMX19_05061 0.42 -0.2 545,281 + -0.3 545,281 + -1.3 545,356 + -0.8 545,356 + -0.7 545,356 + -0.0 545,361 + -1.6 545,361 + -1.0 545,364 + +0.9 545,365 - +0.1 545,366 + +0.8 545,367 - -1.0 545,367 - -1.2 545,373 - +1.5 545,439 + -0.5 545,440 - -0.3 545,440 - -0.6 545,511 + -0.1 545,511 + -0.7 545,512 - -1.0 545,599 + -0.2 545,632 + -1.0 545,632 + -0.8 545,632 + -0.3 545,633 - +1.1 545,633 - -0.1 545,633 - +0.8 545,633 - -0.6 545,704 + MPMX19_05062 0.40 -0.1 545,884 - -0.0 545,884 - -0.4 545,884 - +0.1 545,960 + -1.7 545,960 + -0.1 545,960 + -0.0 545,960 + +0.7 545,961 - +0.1 545,961 - +1.5 545,970 - +0.1 545,970 - +0.9 545,970 - -0.5 546,029 - -0.1 546,029 - +0.8 546,062 + -0.8 546,585 + MPMX19_05063 0.61 -1.0 546,585 + MPMX19_05063 0.61 -0.5 546,585 + MPMX19_05063 0.61 +0.9 546,585 + MPMX19_05063 0.61 -0.7 546,585 + MPMX19_05063 0.61 -1.1 546,585 + MPMX19_05063 0.61 +0.1 546,585 + MPMX19_05063 0.61 -0.0 546,585 + MPMX19_05063 0.61 -0.8 546,585 + MPMX19_05063 0.61 -0.8 546,585 + MPMX19_05063 0.61 -0.8 546,585 + MPMX19_05063 0.61 +2.8 546,585 - MPMX19_05063 0.61 +1.1 546,586 - MPMX19_05063 0.61 +0.0 546,586 - MPMX19_05063 0.61 -2.6 546,586 - MPMX19_05063 0.61 -2.5 546,586 - MPMX19_05063 0.61 -1.0 546,586 - MPMX19_05063 0.61 +2.5 546,586 - MPMX19_05063 0.61 +0.9 546,586 - MPMX19_05063 0.61 -0.5 546,586 - MPMX19_05063 0.61 -1.1 546,612 + MPMX19_05063 0.63 -0.3 546,612 + MPMX19_05063 0.63 -0.3 546,613 - MPMX19_05063 0.63 -0.7 546,613 - MPMX19_05063 0.63 -0.1 546,649 - MPMX19_05063 0.67 -0.1 546,912 + -0.3 546,912 + -1.8 546,912 + -0.2 546,912 + -1.0 546,912 + +0.7 546,913 - +0.9 546,913 - -0.1 546,966 + -1.1 546,966 + -0.8 546,966 + -1.7 546,966 + +0.1 546,966 + -0.6 546,966 + -0.9 546,966 + -0.1 546,966 + +0.3 546,966 + -1.7 546,966 + -0.5 546,966 + +0.6 546,966 + +0.9 546,966 + -0.3 546,966 + +0.5 546,966 + +1.3 546,966 + -1.5 546,966 + +0.5 546,966 + +2.2 546,966 + -1.1 546,966 + +0.2 546,966 + +0.7 546,966 + -0.7 546,966 + +0.5 546,967 - -0.1 546,967 - -1.1 546,967 - +0.8 546,967 - +0.7 546,967 - +1.2 546,967 - +0.5 546,967 - -0.3 546,967 - +1.2 546,967 - -0.9 546,967 - -1.9 546,967 - -0.2 546,967 - -0.7 546,967 - -1.4 546,967 - -2.6 546,967 - -0.4 546,967 - +0.2 546,967 - +0.2 546,967 - -0.3 546,967 - +0.2 546,967 - -0.3 546,967 - -0.1 546,967 - -1.7 546,967 - +0.2 546,967 - +0.4 546,967 - -0.9 546,967 - -1.3 546,967 - +0.6 546,967 - +0.9 547,022 - -0.2 547,039 + -2.0 547,039 + +0.9 547,039 + +0.7 547,040 - -0.1 547,040 - -1.3 547,040 - +0.7 547,061 + +1.0 547,061 + -0.5 547,061 + +0.8 547,061 + -1.1 547,061 + -0.2 547,061 + -0.3 547,061 + -0.0 547,061 + -0.7 547,061 + +0.5 547,061 + -0.7 547,061 + -1.5 547,061 + -0.1 547,062 - -3.0 547,062 - +1.5 547,062 - +1.1 547,062 - -0.5 547,062 - -0.2 547,062 - +0.6 547,062 - +0.5 547,062 - -1.7 547,062 - +0.5 547,122 + +0.2 547,122 + +0.1 547,122 + -1.8 547,122 + -1.1 547,122 + -0.4 547,122 + -0.1 547,122 + -1.7 547,122 + -2.6 547,122 + -0.2 547,122 + -1.0 547,302 + MPMX19_05064 0.55 -0.5 547,302 + MPMX19_05064 0.55 +1.3 547,381 + MPMX19_05064 0.83 +1.5 547,381 + MPMX19_05064 0.83 -0.8 547,434 + +1.1 547,434 + +2.1 547,681 + MPMX19_05065 0.28 -2.2 547,681 + MPMX19_05065 0.28 -0.4 547,681 + MPMX19_05065 0.28 +2.1 547,681 + MPMX19_05065 0.28 -0.5 547,681 + MPMX19_05065 0.28 -0.1
Or see this region's nucleotide sequence