Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05039 and MPMX19_05040 are separated by 238 nucleotides MPMX19_05040 and MPMX19_05041 overlap by 4 nucleotides
MPMX19_05039: MPMX19_05039 - ATP synthase subunit beta, at 523,443 to 524,906
_05039
MPMX19_05040: MPMX19_05040 - hypothetical protein, at 525,145 to 525,705
_05040
MPMX19_05041: MPMX19_05041 - 1,3,6,8-tetrahydroxynaphthalene synthase, at 525,702 to 526,760
_05041
Position (kb) 525
526 Strain fitness (log2 ratio) -2
-1
0
1
2 at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.085 kb on + strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.086 kb on - strand at 525.146 kb on + strand at 525.251 kb on + strand, within MPMX19_05040 at 525.252 kb on - strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.308 kb on + strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.309 kb on - strand, within MPMX19_05040 at 525.469 kb on + strand, within MPMX19_05040 at 525.470 kb on - strand, within MPMX19_05040 at 525.470 kb on - strand, within MPMX19_05040 at 525.566 kb on + strand, within MPMX19_05040 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.044 kb on + strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.045 kb on - strand, within MPMX19_05041 at 526.573 kb on + strand, within MPMX19_05041 at 526.573 kb on + strand, within MPMX19_05041 at 526.573 kb on + strand, within MPMX19_05041 at 526.574 kb on - strand, within MPMX19_05041 at 526.704 kb on + strand at 526.704 kb on + strand at 526.704 kb on + strand at 526.704 kb on + strand at 526.705 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 525,085 + +0.1 525,085 + -0.2 525,085 + -2.3 525,085 + -1.1 525,085 + -1.1 525,085 + +0.2 525,085 + -0.3 525,085 + +0.3 525,085 + +0.9 525,086 - +2.3 525,086 - +0.8 525,086 - -0.1 525,086 - +1.3 525,086 - -0.5 525,086 - -0.1 525,086 - -0.5 525,086 - +1.5 525,086 - -0.0 525,086 - -1.1 525,086 - -0.3 525,086 - +0.2 525,146 + +0.2 525,251 + MPMX19_05040 0.19 -0.7 525,252 - MPMX19_05040 0.19 -0.6 525,308 + MPMX19_05040 0.29 -0.9 525,308 + MPMX19_05040 0.29 +1.5 525,308 + MPMX19_05040 0.29 -0.1 525,308 + MPMX19_05040 0.29 +0.8 525,308 + MPMX19_05040 0.29 -1.1 525,308 + MPMX19_05040 0.29 -0.1 525,308 + MPMX19_05040 0.29 +0.2 525,308 + MPMX19_05040 0.29 +0.5 525,308 + MPMX19_05040 0.29 -0.0 525,308 + MPMX19_05040 0.29 -1.2 525,309 - MPMX19_05040 0.29 -0.1 525,309 - MPMX19_05040 0.29 +0.2 525,309 - MPMX19_05040 0.29 +0.7 525,309 - MPMX19_05040 0.29 +0.7 525,309 - MPMX19_05040 0.29 -0.2 525,469 + MPMX19_05040 0.58 +1.2 525,470 - MPMX19_05040 0.58 +2.1 525,470 - MPMX19_05040 0.58 +1.2 525,566 + MPMX19_05040 0.75 +0.5 526,044 + MPMX19_05041 0.32 +0.2 526,044 + MPMX19_05041 0.32 +0.8 526,044 + MPMX19_05041 0.32 -1.3 526,044 + MPMX19_05041 0.32 -0.1 526,044 + MPMX19_05041 0.32 -1.3 526,044 + MPMX19_05041 0.32 -1.5 526,044 + MPMX19_05041 0.32 -0.5 526,044 + MPMX19_05041 0.32 +2.0 526,045 - MPMX19_05041 0.32 -0.5 526,045 - MPMX19_05041 0.32 -0.9 526,045 - MPMX19_05041 0.32 -0.2 526,045 - MPMX19_05041 0.32 +0.1 526,045 - MPMX19_05041 0.32 -0.2 526,045 - MPMX19_05041 0.32 +0.9 526,045 - MPMX19_05041 0.32 +0.2 526,045 - MPMX19_05041 0.32 -0.5 526,045 - MPMX19_05041 0.32 -0.8 526,045 - MPMX19_05041 0.32 -0.7 526,573 + MPMX19_05041 0.82 -1.7 526,573 + MPMX19_05041 0.82 -1.7 526,573 + MPMX19_05041 0.82 -2.4 526,574 - MPMX19_05041 0.82 +2.4 526,704 + -1.3 526,704 + -0.1 526,704 + -0.4 526,704 + +0.1 526,705 - +0.3
Or see this region's nucleotide sequence