Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04732

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_04731 and MPMX19_04732 overlap by 8 nucleotidesMPMX19_04732 and MPMX19_04733 are separated by 100 nucleotidesMPMX19_04733 and MPMX19_04734 overlap by 22 nucleotides MPMX19_04731: MPMX19_04731 - hypothetical protein, at 122,581 to 123,630 _04731 MPMX19_04732: MPMX19_04732 - hypothetical protein, at 123,623 to 124,513 _04732 MPMX19_04733: MPMX19_04733 - hypothetical protein, at 124,614 to 125,357 _04733 MPMX19_04734: MPMX19_04734 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 125,336 to 125,701 _04734 Position (kb) 123 124 125Strain fitness (log2 ratio) -3 -2 -1 0 1at 122.855 kb on + strand, within MPMX19_04731at 122.856 kb on - strand, within MPMX19_04731at 122.979 kb on - strand, within MPMX19_04731at 122.979 kb on - strand, within MPMX19_04731at 123.002 kb on + strand, within MPMX19_04731at 123.002 kb on + strand, within MPMX19_04731at 123.003 kb on - strand, within MPMX19_04731at 123.003 kb on - strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.086 kb on + strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.087 kb on - strand, within MPMX19_04731at 123.314 kb on + strand, within MPMX19_04731at 123.315 kb on - strand, within MPMX19_04731at 123.315 kb on - strand, within MPMX19_04731at 123.315 kb on - strand, within MPMX19_04731at 123.726 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.816 kb on + strand, within MPMX19_04732at 123.817 kb on - strand, within MPMX19_04732at 123.817 kb on - strand, within MPMX19_04732at 123.817 kb on - strand, within MPMX19_04732at 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.578 kb on + strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.579 kb on - strandat 124.734 kb on - strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.776 kb on + strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.777 kb on - strand, within MPMX19_04733at 124.912 kb on + strand, within MPMX19_04733at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.448 kb on + strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734at 125.449 kb on - strand, within MPMX19_04734

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
remove
122,855 + MPMX19_04731 0.26 -2.3
122,856 - MPMX19_04731 0.26 -0.0
122,979 - MPMX19_04731 0.38 +0.0
122,979 - MPMX19_04731 0.38 +1.1
123,002 + MPMX19_04731 0.40 -0.0
123,002 + MPMX19_04731 0.40 +0.5
123,003 - MPMX19_04731 0.40 -0.8
123,003 - MPMX19_04731 0.40 -1.1
123,086 + MPMX19_04731 0.48 -0.2
123,086 + MPMX19_04731 0.48 +0.3
123,086 + MPMX19_04731 0.48 +0.1
123,086 + MPMX19_04731 0.48 -0.4
123,087 - MPMX19_04731 0.48 +0.2
123,087 - MPMX19_04731 0.48 +0.5
123,087 - MPMX19_04731 0.48 +0.4
123,087 - MPMX19_04731 0.48 -1.1
123,087 - MPMX19_04731 0.48 +0.9
123,314 + MPMX19_04731 0.70 +0.4
123,315 - MPMX19_04731 0.70 -0.5
123,315 - MPMX19_04731 0.70 +0.5
123,315 - MPMX19_04731 0.70 +1.2
123,726 + MPMX19_04732 0.12 -1.0
123,816 + MPMX19_04732 0.22 +0.1
123,816 + MPMX19_04732 0.22 +0.3
123,816 + MPMX19_04732 0.22 +1.2
123,816 + MPMX19_04732 0.22 -1.1
123,816 + MPMX19_04732 0.22 -0.3
123,816 + MPMX19_04732 0.22 +1.6
123,817 - MPMX19_04732 0.22 -0.4
123,817 - MPMX19_04732 0.22 -0.1
123,817 - MPMX19_04732 0.22 -2.0
124,578 + -0.8
124,578 + -1.1
124,578 + +0.2
124,578 + +0.1
124,578 + -0.6
124,578 + +0.8
124,579 - -0.2
124,579 - -0.4
124,579 - -2.2
124,579 - -0.7
124,579 - -1.1
124,579 - +0.2
124,579 - -3.0
124,734 - MPMX19_04733 0.16 +0.7
124,776 + MPMX19_04733 0.22 -1.4
124,776 + MPMX19_04733 0.22 -0.9
124,776 + MPMX19_04733 0.22 -0.7
124,776 + MPMX19_04733 0.22 -0.7
124,776 + MPMX19_04733 0.22 -1.3
124,776 + MPMX19_04733 0.22 -0.7
124,776 + MPMX19_04733 0.22 +0.4
124,776 + MPMX19_04733 0.22 -0.5
124,776 + MPMX19_04733 0.22 -2.1
124,776 + MPMX19_04733 0.22 -0.3
124,776 + MPMX19_04733 0.22 +0.1
124,777 - MPMX19_04733 0.22 +0.5
124,777 - MPMX19_04733 0.22 +0.3
124,777 - MPMX19_04733 0.22 +0.3
124,777 - MPMX19_04733 0.22 +1.3
124,777 - MPMX19_04733 0.22 -0.6
124,777 - MPMX19_04733 0.22 -0.1
124,777 - MPMX19_04733 0.22 -1.2
124,777 - MPMX19_04733 0.22 -0.6
124,777 - MPMX19_04733 0.22 -2.0
124,777 - MPMX19_04733 0.22 -0.6
124,777 - MPMX19_04733 0.22 +0.9
124,777 - MPMX19_04733 0.22 +1.1
124,777 - MPMX19_04733 0.22 +0.4
124,777 - MPMX19_04733 0.22 -0.1
124,912 + MPMX19_04733 0.40 +0.5
125,448 + MPMX19_04734 0.31 -1.2
125,448 + MPMX19_04734 0.31 -1.0
125,448 + MPMX19_04734 0.31 -2.2
125,448 + MPMX19_04734 0.31 +1.7
125,448 + MPMX19_04734 0.31 -0.0
125,448 + MPMX19_04734 0.31 -1.6
125,448 + MPMX19_04734 0.31 +0.8
125,449 - MPMX19_04734 0.31 +0.7
125,449 - MPMX19_04734 0.31 +0.5
125,449 - MPMX19_04734 0.31 -0.5
125,449 - MPMX19_04734 0.31 -0.8
125,449 - MPMX19_04734 0.31 -0.5

Or see this region's nucleotide sequence