Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04609

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04608 and MPMX19_04609 are separated by 17 nucleotidesMPMX19_04609 and MPMX19_04610 overlap by 4 nucleotidesMPMX19_04610 and MPMX19_04611 are separated by 274 nucleotides MPMX19_04608: MPMX19_04608 - 3-ketoacyl-CoA thiolase, at 993,645 to 994,847 _04608 MPMX19_04609: MPMX19_04609 - Putative short-chain type dehydrogenase/reductase, at 994,865 to 995,800 _04609 MPMX19_04610: MPMX19_04610 - putative enoyl-CoA hydratase 1, at 995,797 to 996,279 _04610 MPMX19_04611: MPMX19_04611 - hypothetical protein, at 996,554 to 997,195 _04611 Position (kb) 994 995 996Strain fitness (log2 ratio) -2 -1 0 1 2at 994.214 kb on + strand, within MPMX19_04608at 994.214 kb on + strand, within MPMX19_04608at 994.214 kb on + strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.215 kb on - strand, within MPMX19_04608at 994.339 kb on + strand, within MPMX19_04608at 994.340 kb on - strand, within MPMX19_04608at 994.369 kb on + strand, within MPMX19_04608at 994.370 kb on - strand, within MPMX19_04608at 994.370 kb on - strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.411 kb on + strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.412 kb on - strand, within MPMX19_04608at 994.796 kb on - strandat 994.828 kb on - strandat 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.043 kb on + strand, within MPMX19_04609at 995.044 kb on - strand, within MPMX19_04609at 995.044 kb on - strand, within MPMX19_04609at 995.044 kb on - strand, within MPMX19_04609at 995.280 kb on + strand, within MPMX19_04609at 995.280 kb on + strand, within MPMX19_04609at 995.343 kb on + strand, within MPMX19_04609at 995.344 kb on - strand, within MPMX19_04609at 995.344 kb on - strand, within MPMX19_04609at 995.703 kb on + strand, within MPMX19_04609at 995.894 kb on + strand, within MPMX19_04610at 995.894 kb on + strand, within MPMX19_04610at 995.895 kb on - strand, within MPMX19_04610at 995.895 kb on - strand, within MPMX19_04610at 996.008 kb on + strand, within MPMX19_04610at 996.008 kb on + strand, within MPMX19_04610at 996.009 kb on - strand, within MPMX19_04610at 996.458 kb on - strandat 996.458 kb on - strandat 996.533 kb on + strandat 996.534 kb on - strandat 996.534 kb on - strandat 996.610 kb on + strandat 996.611 kb on - strandat 996.616 kb on - strandat 996.710 kb on + strand, within MPMX19_04611at 996.710 kb on + strand, within MPMX19_04611

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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994,214 + MPMX19_04608 0.47 +0.9
994,214 + MPMX19_04608 0.47 -0.6
994,214 + MPMX19_04608 0.47 -1.0
994,215 - MPMX19_04608 0.47 -1.8
994,215 - MPMX19_04608 0.47 -0.8
994,215 - MPMX19_04608 0.47 +0.3
994,215 - MPMX19_04608 0.47 +0.5
994,215 - MPMX19_04608 0.47 -2.2
994,215 - MPMX19_04608 0.47 -1.8
994,215 - MPMX19_04608 0.47 +0.1
994,339 + MPMX19_04608 0.58 +0.8
994,340 - MPMX19_04608 0.58 -0.0
994,369 + MPMX19_04608 0.60 -0.7
994,370 - MPMX19_04608 0.60 -2.2
994,370 - MPMX19_04608 0.60 -0.7
994,411 + MPMX19_04608 0.64 -0.4
994,411 + MPMX19_04608 0.64 +0.2
994,411 + MPMX19_04608 0.64 -0.7
994,411 + MPMX19_04608 0.64 -0.5
994,411 + MPMX19_04608 0.64 -0.6
994,411 + MPMX19_04608 0.64 +0.0
994,411 + MPMX19_04608 0.64 -0.6
994,411 + MPMX19_04608 0.64 +0.6
994,411 + MPMX19_04608 0.64 +0.4
994,411 + MPMX19_04608 0.64 +1.2
994,411 + MPMX19_04608 0.64 +0.0
994,411 + MPMX19_04608 0.64 +0.3
994,411 + MPMX19_04608 0.64 +0.3
994,411 + MPMX19_04608 0.64 -2.1
994,412 - MPMX19_04608 0.64 -1.0
994,412 - MPMX19_04608 0.64 -0.0
994,412 - MPMX19_04608 0.64 -0.2
994,412 - MPMX19_04608 0.64 +0.2
994,412 - MPMX19_04608 0.64 -2.1
994,412 - MPMX19_04608 0.64 -1.0
994,412 - MPMX19_04608 0.64 -0.2
994,412 - MPMX19_04608 0.64 +0.8
994,412 - MPMX19_04608 0.64 +0.6
994,412 - MPMX19_04608 0.64 -0.7
994,412 - MPMX19_04608 0.64 +0.3
994,796 - +0.2
994,828 - -1.0
995,043 + MPMX19_04609 0.19 +0.6
995,043 + MPMX19_04609 0.19 -0.6
995,043 + MPMX19_04609 0.19 +1.3
995,043 + MPMX19_04609 0.19 -0.1
995,043 + MPMX19_04609 0.19 -1.8
995,043 + MPMX19_04609 0.19 +1.6
995,043 + MPMX19_04609 0.19 -2.1
995,043 + MPMX19_04609 0.19 -0.5
995,043 + MPMX19_04609 0.19 +1.4
995,043 + MPMX19_04609 0.19 -1.1
995,043 + MPMX19_04609 0.19 +0.0
995,043 + MPMX19_04609 0.19 -0.4
995,043 + MPMX19_04609 0.19 +0.5
995,043 + MPMX19_04609 0.19 +0.3
995,044 - MPMX19_04609 0.19 -0.9
995,044 - MPMX19_04609 0.19 -0.6
995,044 - MPMX19_04609 0.19 +1.3
995,280 + MPMX19_04609 0.44 -0.1
995,280 + MPMX19_04609 0.44 -1.9
995,343 + MPMX19_04609 0.51 -1.0
995,344 - MPMX19_04609 0.51 +0.9
995,344 - MPMX19_04609 0.51 +1.9
995,703 + MPMX19_04609 0.90 -1.4
995,894 + MPMX19_04610 0.20 -1.6
995,894 + MPMX19_04610 0.20 -0.6
995,895 - MPMX19_04610 0.20 -0.4
995,895 - MPMX19_04610 0.20 +1.5
996,008 + MPMX19_04610 0.44 +1.6
996,008 + MPMX19_04610 0.44 -2.2
996,009 - MPMX19_04610 0.44 -0.2
996,458 - +0.3
996,458 - +0.0
996,533 + -0.7
996,534 - -0.6
996,534 - +0.4
996,610 + +0.8
996,611 - +0.0
996,616 - -2.3
996,710 + MPMX19_04611 0.24 -2.0
996,710 + MPMX19_04611 0.24 +0.4

Or see this region's nucleotide sequence