Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04138 and MPMX19_04139 are separated by 95 nucleotides MPMX19_04139 and MPMX19_04140 are separated by 35 nucleotides MPMX19_04140 and MPMX19_04141 are separated by 17 nucleotides MPMX19_04141 and MPMX19_04142 overlap by 8 nucleotides
MPMX19_04138: MPMX19_04138 - hypothetical protein, at 450,213 to 450,674
_04138
MPMX19_04139: MPMX19_04139 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 450,770 to 451,420
_04139
MPMX19_04140: MPMX19_04140 - 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase, at 451,456 to 452,289
_04140
MPMX19_04141: MPMX19_04141 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 452,307 to 453,026
_04141
MPMX19_04142: MPMX19_04142 - hypothetical protein, at 453,019 to 453,804
_04142
Position (kb) 451
452
453 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 450.465 kb on + strand, within MPMX19_04138 at 450.493 kb on - strand, within MPMX19_04138 at 450.502 kb on - strand, within MPMX19_04138 at 451.208 kb on + strand, within MPMX19_04139 at 451.208 kb on + strand, within MPMX19_04139 at 451.208 kb on + strand, within MPMX19_04139 at 451.208 kb on + strand, within MPMX19_04139 at 451.208 kb on + strand, within MPMX19_04139 at 451.208 kb on + strand, within MPMX19_04139 at 451.208 kb on + strand, within MPMX19_04139 at 451.208 kb on + strand, within MPMX19_04139 at 451.208 kb on + strand, within MPMX19_04139 at 451.208 kb on + strand, within MPMX19_04139 at 451.209 kb on - strand, within MPMX19_04139 at 451.209 kb on - strand, within MPMX19_04139 at 451.209 kb on - strand, within MPMX19_04139 at 451.402 kb on + strand at 451.402 kb on + strand at 451.402 kb on + strand at 451.402 kb on + strand at 451.402 kb on + strand at 451.403 kb on - strand at 451.403 kb on - strand at 451.403 kb on - strand at 451.403 kb on - strand at 451.403 kb on - strand at 451.403 kb on - strand at 451.406 kb on + strand at 451.407 kb on - strand at 451.437 kb on + strand at 451.759 kb on + strand, within MPMX19_04140 at 451.759 kb on + strand, within MPMX19_04140 at 451.759 kb on + strand, within MPMX19_04140 at 451.760 kb on - strand, within MPMX19_04140 at 451.760 kb on - strand, within MPMX19_04140 at 451.760 kb on - strand, within MPMX19_04140 at 451.760 kb on - strand, within MPMX19_04140 at 451.812 kb on + strand, within MPMX19_04140 at 451.812 kb on + strand, within MPMX19_04140 at 451.812 kb on + strand, within MPMX19_04140 at 451.813 kb on - strand, within MPMX19_04140 at 451.813 kb on - strand, within MPMX19_04140 at 451.813 kb on - strand, within MPMX19_04140 at 451.891 kb on + strand, within MPMX19_04140 at 451.891 kb on + strand, within MPMX19_04140 at 451.891 kb on + strand, within MPMX19_04140 at 451.892 kb on - strand, within MPMX19_04140 at 451.892 kb on - strand, within MPMX19_04140 at 451.892 kb on - strand, within MPMX19_04140 at 451.892 kb on - strand, within MPMX19_04140 at 451.892 kb on - strand, within MPMX19_04140 at 451.892 kb on - strand, within MPMX19_04140 at 451.892 kb on - strand, within MPMX19_04140 at 451.987 kb on + strand, within MPMX19_04140 at 451.988 kb on - strand, within MPMX19_04140 at 452.050 kb on + strand, within MPMX19_04140 at 452.050 kb on + strand, within MPMX19_04140 at 452.051 kb on - strand, within MPMX19_04140 at 452.051 kb on - strand, within MPMX19_04140 at 452.051 kb on - strand, within MPMX19_04140 at 452.051 kb on - strand, within MPMX19_04140 at 452.326 kb on + strand at 452.326 kb on + strand at 452.326 kb on + strand at 452.327 kb on - strand at 452.327 kb on - strand at 452.328 kb on - strand at 452.368 kb on + strand at 452.368 kb on + strand at 452.368 kb on + strand at 452.368 kb on + strand at 452.368 kb on + strand at 452.368 kb on + strand at 452.368 kb on + strand at 452.369 kb on - strand at 452.369 kb on - strand at 452.369 kb on - strand at 452.369 kb on - strand at 452.369 kb on - strand at 452.369 kb on - strand at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.401 kb on + strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.402 kb on - strand, within MPMX19_04141 at 452.539 kb on + strand, within MPMX19_04141 at 452.539 kb on + strand, within MPMX19_04141 at 452.539 kb on + strand, within MPMX19_04141 at 452.540 kb on - strand, within MPMX19_04141 at 452.540 kb on - strand, within MPMX19_04141 at 452.540 kb on - strand, within MPMX19_04141 at 452.800 kb on + strand, within MPMX19_04141 at 452.800 kb on + strand, within MPMX19_04141 at 452.800 kb on + strand, within MPMX19_04141 at 452.801 kb on - strand, within MPMX19_04141 at 452.801 kb on - strand, within MPMX19_04141 at 452.801 kb on - strand, within MPMX19_04141 at 452.801 kb on - strand, within MPMX19_04141 at 452.801 kb on - strand, within MPMX19_04141 at 452.956 kb on + strand at 452.956 kb on + strand at 452.962 kb on + strand at 452.962 kb on + strand at 452.962 kb on + strand at 452.963 kb on - strand at 452.963 kb on - strand at 452.963 kb on - strand at 452.963 kb on - strand at 452.963 kb on - strand at 452.963 kb on - strand at 453.107 kb on + strand, within MPMX19_04142 at 453.107 kb on + strand, within MPMX19_04142 at 453.107 kb on + strand, within MPMX19_04142 at 453.107 kb on + strand, within MPMX19_04142 at 453.107 kb on + strand, within MPMX19_04142 at 453.107 kb on + strand, within MPMX19_04142 at 453.107 kb on + strand, within MPMX19_04142 at 453.108 kb on - strand, within MPMX19_04142 at 453.108 kb on - strand, within MPMX19_04142 at 453.108 kb on - strand, within MPMX19_04142 at 453.108 kb on - strand, within MPMX19_04142 at 453.236 kb on + strand, within MPMX19_04142 at 453.236 kb on + strand, within MPMX19_04142 at 453.236 kb on + strand, within MPMX19_04142 at 453.237 kb on - strand, within MPMX19_04142 at 453.237 kb on - strand, within MPMX19_04142 at 453.237 kb on - strand, within MPMX19_04142
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 450,465 + MPMX19_04138 0.55 +1.9 450,493 - MPMX19_04138 0.61 +0.4 450,502 - MPMX19_04138 0.63 -0.4 451,208 + MPMX19_04139 0.67 -0.8 451,208 + MPMX19_04139 0.67 +1.2 451,208 + MPMX19_04139 0.67 +0.6 451,208 + MPMX19_04139 0.67 -0.2 451,208 + MPMX19_04139 0.67 -0.2 451,208 + MPMX19_04139 0.67 -1.1 451,208 + MPMX19_04139 0.67 +1.6 451,208 + MPMX19_04139 0.67 -1.0 451,208 + MPMX19_04139 0.67 -0.2 451,208 + MPMX19_04139 0.67 +0.5 451,209 - MPMX19_04139 0.67 -2.2 451,209 - MPMX19_04139 0.67 -2.1 451,209 - MPMX19_04139 0.67 -0.7 451,402 + -2.4 451,402 + -0.6 451,402 + -0.9 451,402 + +0.3 451,402 + -0.3 451,403 - +0.1 451,403 - -0.8 451,403 - +0.3 451,403 - -1.8 451,403 - +0.9 451,403 - -1.1 451,406 + +0.9 451,407 - -0.2 451,437 + -1.6 451,759 + MPMX19_04140 0.36 +0.9 451,759 + MPMX19_04140 0.36 +0.4 451,759 + MPMX19_04140 0.36 -0.8 451,760 - MPMX19_04140 0.36 -0.5 451,760 - MPMX19_04140 0.36 +0.6 451,760 - MPMX19_04140 0.36 -0.5 451,760 - MPMX19_04140 0.36 +1.0 451,812 + MPMX19_04140 0.43 -0.6 451,812 + MPMX19_04140 0.43 +0.0 451,812 + MPMX19_04140 0.43 +0.9 451,813 - MPMX19_04140 0.43 +1.0 451,813 - MPMX19_04140 0.43 +1.0 451,813 - MPMX19_04140 0.43 -0.2 451,891 + MPMX19_04140 0.52 +0.8 451,891 + MPMX19_04140 0.52 +0.9 451,891 + MPMX19_04140 0.52 +0.2 451,892 - MPMX19_04140 0.52 -0.9 451,892 - MPMX19_04140 0.52 -1.1 451,892 - MPMX19_04140 0.52 -0.0 451,892 - MPMX19_04140 0.52 +0.1 451,892 - MPMX19_04140 0.52 +0.2 451,892 - MPMX19_04140 0.52 +2.2 451,892 - MPMX19_04140 0.52 -0.1 451,987 + MPMX19_04140 0.64 +0.3 451,988 - MPMX19_04140 0.64 +0.7 452,050 + MPMX19_04140 0.71 +0.3 452,050 + MPMX19_04140 0.71 +0.8 452,051 - MPMX19_04140 0.71 +0.6 452,051 - MPMX19_04140 0.71 -1.9 452,051 - MPMX19_04140 0.71 -1.2 452,051 - MPMX19_04140 0.71 +0.9 452,326 + -0.3 452,326 + -0.6 452,326 + +0.7 452,327 - -0.5 452,327 - -0.2 452,328 - +0.7 452,368 + -0.0 452,368 + +1.4 452,368 + -1.3 452,368 + -0.7 452,368 + -1.3 452,368 + -0.3 452,368 + +0.9 452,369 - -1.0 452,369 - -0.4 452,369 - +0.3 452,369 - -1.3 452,369 - +0.8 452,369 - -0.9 452,401 + MPMX19_04141 0.13 +0.2 452,401 + MPMX19_04141 0.13 -0.9 452,401 + MPMX19_04141 0.13 -1.8 452,401 + MPMX19_04141 0.13 +0.8 452,401 + MPMX19_04141 0.13 -0.0 452,401 + MPMX19_04141 0.13 +1.0 452,401 + MPMX19_04141 0.13 -0.2 452,401 + MPMX19_04141 0.13 -0.5 452,401 + MPMX19_04141 0.13 +1.1 452,401 + MPMX19_04141 0.13 -1.0 452,401 + MPMX19_04141 0.13 -1.2 452,401 + MPMX19_04141 0.13 -0.5 452,401 + MPMX19_04141 0.13 +0.0 452,401 + MPMX19_04141 0.13 +0.1 452,401 + MPMX19_04141 0.13 -0.4 452,401 + MPMX19_04141 0.13 -0.7 452,401 + MPMX19_04141 0.13 -0.4 452,402 - MPMX19_04141 0.13 -1.7 452,402 - MPMX19_04141 0.13 -0.8 452,402 - MPMX19_04141 0.13 -0.6 452,402 - MPMX19_04141 0.13 +0.3 452,402 - MPMX19_04141 0.13 +0.1 452,402 - MPMX19_04141 0.13 +0.4 452,402 - MPMX19_04141 0.13 -0.2 452,402 - MPMX19_04141 0.13 -0.9 452,402 - MPMX19_04141 0.13 -0.0 452,402 - MPMX19_04141 0.13 -0.4 452,402 - MPMX19_04141 0.13 +0.3 452,402 - MPMX19_04141 0.13 -1.2 452,402 - MPMX19_04141 0.13 -1.3 452,402 - MPMX19_04141 0.13 +0.4 452,402 - MPMX19_04141 0.13 -0.8 452,539 + MPMX19_04141 0.32 -0.0 452,539 + MPMX19_04141 0.32 +1.4 452,539 + MPMX19_04141 0.32 -3.8 452,540 - MPMX19_04141 0.32 +0.1 452,540 - MPMX19_04141 0.32 -2.5 452,540 - MPMX19_04141 0.32 -2.2 452,800 + MPMX19_04141 0.68 +0.8 452,800 + MPMX19_04141 0.68 +0.2 452,800 + MPMX19_04141 0.68 +1.3 452,801 - MPMX19_04141 0.69 -0.8 452,801 - MPMX19_04141 0.69 +1.0 452,801 - MPMX19_04141 0.69 -1.1 452,801 - MPMX19_04141 0.69 +0.8 452,801 - MPMX19_04141 0.69 +0.7 452,956 + -0.9 452,956 + +2.2 452,962 + +1.6 452,962 + -0.9 452,962 + -0.0 452,963 - -0.2 452,963 - -0.1 452,963 - +0.8 452,963 - -0.6 452,963 - -0.9 452,963 - -0.1 453,107 + MPMX19_04142 0.11 -1.6 453,107 + MPMX19_04142 0.11 +1.8 453,107 + MPMX19_04142 0.11 +0.4 453,107 + MPMX19_04142 0.11 -0.7 453,107 + MPMX19_04142 0.11 +0.6 453,107 + MPMX19_04142 0.11 -0.2 453,107 + MPMX19_04142 0.11 -0.7 453,108 - MPMX19_04142 0.11 +0.1 453,108 - MPMX19_04142 0.11 -0.2 453,108 - MPMX19_04142 0.11 +1.6 453,108 - MPMX19_04142 0.11 -0.4 453,236 + MPMX19_04142 0.28 -0.2 453,236 + MPMX19_04142 0.28 -1.2 453,236 + MPMX19_04142 0.28 -2.0 453,237 - MPMX19_04142 0.28 -1.5 453,237 - MPMX19_04142 0.28 -0.0 453,237 - MPMX19_04142 0.28 -1.5
Or see this region's nucleotide sequence