Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04095 and MPMX19_04096 are separated by 30 nucleotides MPMX19_04096 and MPMX19_04097 are separated by 194 nucleotides
MPMX19_04095: MPMX19_04095 - hypothetical protein, at 400,820 to 401,341
_04095
MPMX19_04096: MPMX19_04096 - hypothetical protein, at 401,372 to 401,980
_04096
MPMX19_04097: MPMX19_04097 - IS5 family transposase ISAzs10, at 402,175 to 403,251
_04097
Position (kb) 401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 400.471 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.496 kb on + strand at 400.497 kb on - strand at 400.497 kb on - strand at 400.497 kb on - strand at 400.599 kb on + strand at 400.600 kb on - strand at 400.777 kb on + strand at 400.777 kb on + strand at 400.778 kb on - strand at 400.778 kb on - strand at 400.778 kb on - strand at 400.797 kb on + strand at 400.797 kb on + strand at 400.797 kb on + strand at 400.798 kb on - strand at 400.798 kb on - strand at 400.798 kb on - strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.819 kb on + strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.820 kb on - strand at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.970 kb on + strand, within MPMX19_04095 at 400.971 kb on - strand, within MPMX19_04095 at 400.971 kb on - strand, within MPMX19_04095 at 400.971 kb on - strand, within MPMX19_04095 at 401.168 kb on + strand, within MPMX19_04095 at 401.169 kb on - strand, within MPMX19_04095 at 401.169 kb on - strand, within MPMX19_04095 at 401.394 kb on + strand at 401.703 kb on + strand, within MPMX19_04096 at 401.703 kb on + strand, within MPMX19_04096 at 401.704 kb on - strand, within MPMX19_04096 at 401.704 kb on - strand, within MPMX19_04096 at 401.709 kb on + strand, within MPMX19_04096 at 401.709 kb on + strand, within MPMX19_04096 at 401.710 kb on - strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.796 kb on + strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.797 kb on - strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.874 kb on + strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.875 kb on - strand, within MPMX19_04096 at 401.995 kb on + strand at 401.995 kb on + strand at 401.995 kb on + strand at 401.996 kb on - strand at 401.996 kb on - strand at 401.996 kb on - strand at 401.996 kb on - strand at 402.042 kb on + strand at 402.042 kb on + strand at 402.043 kb on - strand at 402.043 kb on - strand at 402.043 kb on - strand at 402.043 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand at 402.093 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 400,471 + +0.8 400,496 + +0.5 400,496 + -1.6 400,496 + -1.0 400,496 + -0.6 400,496 + -0.1 400,496 + -2.2 400,496 + +0.8 400,497 - -1.2 400,497 - -1.3 400,497 - -0.1 400,599 + -0.5 400,600 - -0.4 400,777 + +0.7 400,777 + -1.2 400,778 - +0.7 400,778 - -0.4 400,778 - -0.0 400,797 + +0.4 400,797 + -1.0 400,797 + -0.6 400,798 - -2.4 400,798 - -0.3 400,798 - +0.6 400,819 + +0.9 400,819 + +0.7 400,819 + -2.8 400,819 + +0.5 400,819 + -0.1 400,819 + -0.3 400,819 + +0.9 400,820 - -0.0 400,820 - -0.2 400,820 - +1.0 400,820 - +1.1 400,820 - -0.0 400,820 - -1.2 400,820 - +0.3 400,820 - -0.5 400,820 - -0.4 400,820 - +1.2 400,820 - +0.8 400,820 - +0.2 400,820 - +0.6 400,820 - +0.7 400,970 + MPMX19_04095 0.29 -0.5 400,970 + MPMX19_04095 0.29 -1.6 400,970 + MPMX19_04095 0.29 +1.2 400,970 + MPMX19_04095 0.29 +1.3 400,970 + MPMX19_04095 0.29 -0.4 400,970 + MPMX19_04095 0.29 -0.7 400,971 - MPMX19_04095 0.29 -0.1 400,971 - MPMX19_04095 0.29 +0.6 400,971 - MPMX19_04095 0.29 -0.1 401,168 + MPMX19_04095 0.67 -0.6 401,169 - MPMX19_04095 0.67 +0.4 401,169 - MPMX19_04095 0.67 +0.5 401,394 + -0.0 401,703 + MPMX19_04096 0.54 +0.1 401,703 + MPMX19_04096 0.54 +2.6 401,704 - MPMX19_04096 0.55 -2.0 401,704 - MPMX19_04096 0.55 -0.6 401,709 + MPMX19_04096 0.55 +0.1 401,709 + MPMX19_04096 0.55 +1.2 401,710 - MPMX19_04096 0.56 -0.2 401,796 + MPMX19_04096 0.70 -0.6 401,796 + MPMX19_04096 0.70 -0.2 401,796 + MPMX19_04096 0.70 +1.1 401,796 + MPMX19_04096 0.70 -0.8 401,797 - MPMX19_04096 0.70 +0.9 401,797 - MPMX19_04096 0.70 -1.1 401,797 - MPMX19_04096 0.70 -0.9 401,797 - MPMX19_04096 0.70 -0.7 401,797 - MPMX19_04096 0.70 +1.2 401,797 - MPMX19_04096 0.70 -0.1 401,874 + MPMX19_04096 0.82 +1.1 401,874 + MPMX19_04096 0.82 -0.2 401,874 + MPMX19_04096 0.82 -0.1 401,874 + MPMX19_04096 0.82 +0.6 401,874 + MPMX19_04096 0.82 +1.3 401,874 + MPMX19_04096 0.82 -1.0 401,874 + MPMX19_04096 0.82 -0.6 401,874 + MPMX19_04096 0.82 -0.9 401,874 + MPMX19_04096 0.82 +0.3 401,874 + MPMX19_04096 0.82 -0.0 401,874 + MPMX19_04096 0.82 -2.0 401,875 - MPMX19_04096 0.83 -1.4 401,875 - MPMX19_04096 0.83 +0.5 401,875 - MPMX19_04096 0.83 -0.7 401,875 - MPMX19_04096 0.83 +1.8 401,875 - MPMX19_04096 0.83 +1.0 401,875 - MPMX19_04096 0.83 -1.2 401,875 - MPMX19_04096 0.83 +1.9 401,875 - MPMX19_04096 0.83 +1.2 401,875 - MPMX19_04096 0.83 -2.4 401,875 - MPMX19_04096 0.83 -1.7 401,995 + -1.3 401,995 + +0.6 401,995 + +1.0 401,996 - -0.0 401,996 - +0.9 401,996 - -0.9 401,996 - -1.1 402,042 + -0.7 402,042 + +0.6 402,043 - -1.7 402,043 - -1.4 402,043 - -0.7 402,043 - +0.8 402,093 - +0.3 402,093 - -0.6 402,093 - +0.1 402,093 - -3.2 402,093 - +0.6
Or see this region's nucleotide sequence