Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04008 and MPMX19_04009 overlap by 4 nucleotides MPMX19_04009 and MPMX19_04010 are separated by 11 nucleotides
MPMX19_04008: MPMX19_04008 - Beta-peptidyl aminopeptidase BapA, at 304,479 to 305,588
_04008
MPMX19_04009: MPMX19_04009 - D-aminopeptidase, at 305,585 to 306,418
_04009
MPMX19_04010: MPMX19_04010 - Isoaspartyl peptidase, at 306,430 to 307,401
_04010
Position (kb) 305
306
307 Strain fitness (log2 ratio) -2
-1
0
1 at 304.686 kb on + strand, within MPMX19_04008 at 304.687 kb on - strand, within MPMX19_04008 at 305.396 kb on + strand, within MPMX19_04008 at 305.563 kb on + strand at 305.563 kb on + strand at 305.563 kb on + strand at 305.563 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.594 kb on + strand at 305.595 kb on - strand at 305.595 kb on - strand at 305.595 kb on - strand at 305.595 kb on - strand at 305.595 kb on - strand at 305.666 kb on + strand at 305.667 kb on - strand at 305.667 kb on - strand at 305.912 kb on + strand, within MPMX19_04009 at 305.912 kb on + strand, within MPMX19_04009 at 305.913 kb on - strand, within MPMX19_04009 at 305.996 kb on + strand, within MPMX19_04009 at 305.997 kb on - strand, within MPMX19_04009 at 305.997 kb on - strand, within MPMX19_04009 at 305.997 kb on - strand, within MPMX19_04009 at 305.997 kb on - strand, within MPMX19_04009 at 306.005 kb on + strand, within MPMX19_04009 at 306.005 kb on + strand, within MPMX19_04009 at 306.005 kb on + strand, within MPMX19_04009 at 306.005 kb on + strand, within MPMX19_04009 at 306.005 kb on + strand, within MPMX19_04009 at 306.005 kb on + strand, within MPMX19_04009 at 306.005 kb on + strand, within MPMX19_04009 at 306.005 kb on + strand, within MPMX19_04009 at 306.006 kb on - strand, within MPMX19_04009 at 306.006 kb on - strand, within MPMX19_04009 at 306.006 kb on - strand, within MPMX19_04009 at 306.871 kb on + strand, within MPMX19_04010 at 306.871 kb on + strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 306.872 kb on - strand, within MPMX19_04010 at 307.330 kb on + strand at 307.331 kb on - strand at 307.331 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 304,686 + MPMX19_04008 0.19 -1.7 304,687 - MPMX19_04008 0.19 -1.1 305,396 + MPMX19_04008 0.83 -1.5 305,563 + -0.3 305,563 + +0.1 305,563 + -0.2 305,563 + +0.2 305,594 + +0.6 305,594 + +0.1 305,594 + -0.1 305,594 + -0.9 305,594 + -1.2 305,594 + -0.3 305,594 + -0.9 305,594 + -1.3 305,594 + +0.4 305,594 + -0.3 305,594 + +0.2 305,594 + +0.6 305,594 + +0.2 305,594 + +0.6 305,594 + +0.0 305,595 - -0.9 305,595 - -1.0 305,595 - -0.5 305,595 - -0.6 305,595 - -0.8 305,666 + -0.3 305,667 - +0.6 305,667 - -2.3 305,912 + MPMX19_04009 0.39 +0.2 305,912 + MPMX19_04009 0.39 -0.0 305,913 - MPMX19_04009 0.39 -1.9 305,996 + MPMX19_04009 0.49 -0.4 305,997 - MPMX19_04009 0.49 -2.3 305,997 - MPMX19_04009 0.49 +1.0 305,997 - MPMX19_04009 0.49 -0.9 305,997 - MPMX19_04009 0.49 +1.0 306,005 + MPMX19_04009 0.50 +0.0 306,005 + MPMX19_04009 0.50 +0.4 306,005 + MPMX19_04009 0.50 -0.9 306,005 + MPMX19_04009 0.50 -1.5 306,005 + MPMX19_04009 0.50 +0.2 306,005 + MPMX19_04009 0.50 -0.8 306,005 + MPMX19_04009 0.50 -0.8 306,005 + MPMX19_04009 0.50 +0.2 306,006 - MPMX19_04009 0.50 -0.2 306,006 - MPMX19_04009 0.50 +0.4 306,006 - MPMX19_04009 0.50 -0.4 306,871 + MPMX19_04010 0.45 -1.9 306,871 + MPMX19_04010 0.45 +0.9 306,872 - MPMX19_04010 0.45 -0.3 306,872 - MPMX19_04010 0.45 -0.5 306,872 - MPMX19_04010 0.45 +0.1 306,872 - MPMX19_04010 0.45 -1.3 307,330 + +1.3 307,331 - -0.2 307,331 - -0.3
Or see this region's nucleotide sequence