Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03486 and MPMX19_03487 are separated by 172 nucleotides MPMX19_03487 and MPMX19_03488 are separated by 49 nucleotides
MPMX19_03486: MPMX19_03486 - Pca regulon regulatory protein, at 898,313 to 899,170
_03486
MPMX19_03487: MPMX19_03487 - 4-hydroxy-tetrahydrodipicolinate synthase, at 899,343 to 900,275
_03487
MPMX19_03488: MPMX19_03488 - hypothetical protein, at 900,325 to 902,097
_03488
Position (kb) 899
900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 898.521 kb on + strand, within MPMX19_03486 at 898.521 kb on + strand, within MPMX19_03486 at 898.521 kb on + strand, within MPMX19_03486 at 898.521 kb on + strand, within MPMX19_03486 at 898.522 kb on - strand, within MPMX19_03486 at 898.674 kb on + strand, within MPMX19_03486 at 898.674 kb on + strand, within MPMX19_03486 at 898.674 kb on + strand, within MPMX19_03486 at 898.674 kb on + strand, within MPMX19_03486 at 898.675 kb on - strand, within MPMX19_03486 at 898.675 kb on - strand, within MPMX19_03486 at 898.675 kb on - strand, within MPMX19_03486 at 898.675 kb on - strand, within MPMX19_03486 at 898.675 kb on - strand, within MPMX19_03486 at 898.677 kb on + strand, within MPMX19_03486 at 898.677 kb on + strand, within MPMX19_03486 at 898.678 kb on - strand, within MPMX19_03486 at 898.678 kb on - strand, within MPMX19_03486 at 898.678 kb on - strand, within MPMX19_03486 at 898.746 kb on + strand, within MPMX19_03486 at 898.746 kb on + strand, within MPMX19_03486 at 898.746 kb on + strand, within MPMX19_03486 at 898.746 kb on + strand, within MPMX19_03486 at 898.746 kb on + strand, within MPMX19_03486 at 898.746 kb on + strand, within MPMX19_03486 at 898.747 kb on - strand, within MPMX19_03486 at 898.747 kb on - strand, within MPMX19_03486 at 898.818 kb on + strand, within MPMX19_03486 at 898.857 kb on + strand, within MPMX19_03486 at 898.857 kb on + strand, within MPMX19_03486 at 898.857 kb on + strand, within MPMX19_03486 at 898.857 kb on + strand, within MPMX19_03486 at 898.857 kb on + strand, within MPMX19_03486 at 898.857 kb on + strand, within MPMX19_03486 at 898.857 kb on + strand, within MPMX19_03486 at 898.858 kb on - strand, within MPMX19_03486 at 898.858 kb on - strand, within MPMX19_03486 at 898.858 kb on - strand, within MPMX19_03486 at 898.858 kb on - strand, within MPMX19_03486 at 898.858 kb on - strand, within MPMX19_03486 at 898.858 kb on - strand, within MPMX19_03486 at 898.858 kb on - strand, within MPMX19_03486 at 898.858 kb on - strand, within MPMX19_03486 at 898.863 kb on + strand, within MPMX19_03486 at 898.863 kb on + strand, within MPMX19_03486 at 898.864 kb on - strand, within MPMX19_03486 at 898.864 kb on - strand, within MPMX19_03486 at 898.896 kb on + strand, within MPMX19_03486 at 898.896 kb on + strand, within MPMX19_03486 at 898.897 kb on - strand, within MPMX19_03486 at 898.897 kb on - strand, within MPMX19_03486 at 898.897 kb on - strand, within MPMX19_03486 at 898.926 kb on + strand, within MPMX19_03486 at 898.926 kb on + strand, within MPMX19_03486 at 898.947 kb on + strand, within MPMX19_03486 at 898.947 kb on + strand, within MPMX19_03486 at 898.948 kb on - strand, within MPMX19_03486 at 899.298 kb on + strand at 899.298 kb on + strand at 899.298 kb on + strand at 899.298 kb on + strand at 899.298 kb on + strand at 899.298 kb on + strand at 899.298 kb on + strand at 899.298 kb on + strand at 899.298 kb on + strand at 899.298 kb on + strand at 899.299 kb on - strand at 899.299 kb on - strand at 899.299 kb on - strand at 899.299 kb on - strand at 899.299 kb on - strand at 899.299 kb on - strand at 899.299 kb on - strand at 899.299 kb on - strand at 899.299 kb on - strand at 899.299 kb on - strand at 899.374 kb on + strand at 899.374 kb on + strand at 899.374 kb on + strand at 899.375 kb on - strand at 899.375 kb on - strand at 899.746 kb on + strand, within MPMX19_03487 at 899.746 kb on + strand, within MPMX19_03487 at 899.746 kb on + strand, within MPMX19_03487 at 899.746 kb on + strand, within MPMX19_03487 at 899.746 kb on + strand, within MPMX19_03487 at 899.746 kb on + strand, within MPMX19_03487 at 899.746 kb on + strand, within MPMX19_03487 at 899.746 kb on + strand, within MPMX19_03487 at 899.746 kb on + strand, within MPMX19_03487 at 899.746 kb on + strand, within MPMX19_03487 at 899.746 kb on + strand, within MPMX19_03487 at 899.746 kb on + strand, within MPMX19_03487 at 899.747 kb on - strand, within MPMX19_03487 at 899.747 kb on - strand, within MPMX19_03487 at 899.747 kb on - strand, within MPMX19_03487 at 899.747 kb on - strand, within MPMX19_03487 at 899.747 kb on - strand, within MPMX19_03487 at 899.747 kb on - strand, within MPMX19_03487 at 899.747 kb on - strand, within MPMX19_03487 at 899.747 kb on - strand, within MPMX19_03487 at 899.747 kb on - strand, within MPMX19_03487 at 899.747 kb on - strand, within MPMX19_03487 at 899.851 kb on + strand, within MPMX19_03487 at 899.851 kb on + strand, within MPMX19_03487 at 899.851 kb on + strand, within MPMX19_03487 at 899.851 kb on + strand, within MPMX19_03487 at 899.851 kb on + strand, within MPMX19_03487 at 899.852 kb on - strand, within MPMX19_03487 at 899.852 kb on - strand, within MPMX19_03487 at 899.884 kb on + strand, within MPMX19_03487 at 899.885 kb on - strand, within MPMX19_03487 at 899.896 kb on + strand, within MPMX19_03487 at 899.897 kb on - strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.929 kb on + strand, within MPMX19_03487 at 899.930 kb on - strand, within MPMX19_03487 at 899.930 kb on - strand, within MPMX19_03487 at 899.930 kb on - strand, within MPMX19_03487 at 899.930 kb on - strand, within MPMX19_03487 at 899.930 kb on - strand, within MPMX19_03487 at 899.930 kb on - strand, within MPMX19_03487 at 899.930 kb on - strand, within MPMX19_03487 at 899.930 kb on - strand, within MPMX19_03487 at 899.930 kb on - strand, within MPMX19_03487 at 899.932 kb on + strand, within MPMX19_03487 at 899.933 kb on - strand, within MPMX19_03487 at 899.933 kb on - strand, within MPMX19_03487 at 899.933 kb on - strand, within MPMX19_03487 at 899.933 kb on - strand, within MPMX19_03487 at 899.933 kb on - strand, within MPMX19_03487 at 900.002 kb on - strand, within MPMX19_03487 at 900.002 kb on - strand, within MPMX19_03487 at 900.002 kb on - strand, within MPMX19_03487 at 900.004 kb on + strand, within MPMX19_03487 at 900.119 kb on - strand, within MPMX19_03487 at 900.365 kb on + strand at 900.365 kb on + strand at 900.365 kb on + strand at 900.365 kb on + strand at 900.365 kb on + strand at 900.366 kb on - strand at 900.366 kb on - strand at 900.366 kb on - strand at 900.366 kb on - strand at 900.366 kb on - strand at 900.366 kb on - strand at 900.366 kb on - strand at 900.366 kb on - strand at 900.490 kb on + strand at 900.491 kb on - strand at 900.491 kb on - strand at 900.491 kb on - strand at 900.491 kb on - strand at 900.641 kb on + strand, within MPMX19_03488 at 900.641 kb on + strand, within MPMX19_03488 at 900.641 kb on + strand, within MPMX19_03488 at 900.641 kb on + strand, within MPMX19_03488 at 900.641 kb on + strand, within MPMX19_03488 at 900.642 kb on - strand, within MPMX19_03488 at 900.642 kb on - strand, within MPMX19_03488 at 900.642 kb on - strand, within MPMX19_03488 at 900.642 kb on - strand, within MPMX19_03488 at 900.642 kb on - strand, within MPMX19_03488 at 900.677 kb on + strand, within MPMX19_03488 at 900.677 kb on + strand, within MPMX19_03488 at 900.677 kb on + strand, within MPMX19_03488 at 900.677 kb on + strand, within MPMX19_03488 at 900.677 kb on + strand, within MPMX19_03488 at 900.677 kb on + strand, within MPMX19_03488 at 900.678 kb on - strand, within MPMX19_03488 at 900.678 kb on - strand, within MPMX19_03488 at 900.678 kb on - strand, within MPMX19_03488 at 900.678 kb on - strand, within MPMX19_03488 at 900.678 kb on - strand, within MPMX19_03488 at 900.678 kb on - strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.752 kb on + strand, within MPMX19_03488 at 900.753 kb on - strand, within MPMX19_03488 at 900.753 kb on - strand, within MPMX19_03488 at 900.753 kb on - strand, within MPMX19_03488 at 900.753 kb on - strand, within MPMX19_03488 at 900.753 kb on - strand, within MPMX19_03488 at 900.753 kb on - strand, within MPMX19_03488 at 900.753 kb on - strand, within MPMX19_03488 at 900.753 kb on - strand, within MPMX19_03488 at 900.962 kb on + strand, within MPMX19_03488 at 900.962 kb on + strand, within MPMX19_03488 at 900.962 kb on + strand, within MPMX19_03488 at 901.265 kb on + strand, within MPMX19_03488 at 901.265 kb on + strand, within MPMX19_03488 at 901.265 kb on + strand, within MPMX19_03488 at 901.266 kb on - strand, within MPMX19_03488 at 901.266 kb on - strand, within MPMX19_03488
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 898,521 + MPMX19_03486 0.24 -0.3 898,521 + MPMX19_03486 0.24 +0.8 898,521 + MPMX19_03486 0.24 +0.0 898,521 + MPMX19_03486 0.24 -1.2 898,522 - MPMX19_03486 0.24 -2.3 898,674 + MPMX19_03486 0.42 +1.5 898,674 + MPMX19_03486 0.42 -1.7 898,674 + MPMX19_03486 0.42 -1.7 898,674 + MPMX19_03486 0.42 -0.8 898,675 - MPMX19_03486 0.42 -1.4 898,675 - MPMX19_03486 0.42 +0.6 898,675 - MPMX19_03486 0.42 +0.8 898,675 - MPMX19_03486 0.42 -1.5 898,675 - MPMX19_03486 0.42 -0.3 898,677 + MPMX19_03486 0.42 +1.3 898,677 + MPMX19_03486 0.42 -2.3 898,678 - MPMX19_03486 0.43 -1.3 898,678 - MPMX19_03486 0.43 -0.3 898,678 - MPMX19_03486 0.43 -0.3 898,746 + MPMX19_03486 0.50 +0.8 898,746 + MPMX19_03486 0.50 -0.3 898,746 + MPMX19_03486 0.50 -0.5 898,746 + MPMX19_03486 0.50 -1.1 898,746 + MPMX19_03486 0.50 +0.2 898,746 + MPMX19_03486 0.50 +0.8 898,747 - MPMX19_03486 0.51 +0.0 898,747 - MPMX19_03486 0.51 +0.5 898,818 + MPMX19_03486 0.59 +0.2 898,857 + MPMX19_03486 0.63 -0.1 898,857 + MPMX19_03486 0.63 -0.4 898,857 + MPMX19_03486 0.63 +0.1 898,857 + MPMX19_03486 0.63 +1.1 898,857 + MPMX19_03486 0.63 +1.0 898,857 + MPMX19_03486 0.63 -0.4 898,857 + MPMX19_03486 0.63 +0.5 898,858 - MPMX19_03486 0.64 -1.3 898,858 - MPMX19_03486 0.64 -0.2 898,858 - MPMX19_03486 0.64 -0.5 898,858 - MPMX19_03486 0.64 +0.3 898,858 - MPMX19_03486 0.64 -2.1 898,858 - MPMX19_03486 0.64 -0.2 898,858 - MPMX19_03486 0.64 -0.9 898,858 - MPMX19_03486 0.64 -2.6 898,863 + MPMX19_03486 0.64 +0.5 898,863 + MPMX19_03486 0.64 -2.2 898,864 - MPMX19_03486 0.64 -1.0 898,864 - MPMX19_03486 0.64 -0.4 898,896 + MPMX19_03486 0.68 +0.5 898,896 + MPMX19_03486 0.68 -1.2 898,897 - MPMX19_03486 0.68 -0.3 898,897 - MPMX19_03486 0.68 -1.3 898,897 - MPMX19_03486 0.68 -0.5 898,926 + MPMX19_03486 0.71 -0.2 898,926 + MPMX19_03486 0.71 -0.9 898,947 + MPMX19_03486 0.74 +1.5 898,947 + MPMX19_03486 0.74 -0.1 898,948 - MPMX19_03486 0.74 +0.3 899,298 + -0.9 899,298 + -0.3 899,298 + +0.2 899,298 + +0.9 899,298 + -1.5 899,298 + +0.5 899,298 + -0.1 899,298 + -0.5 899,298 + -0.7 899,298 + -1.1 899,299 - -0.7 899,299 - +0.0 899,299 - +1.5 899,299 - -0.5 899,299 - -1.0 899,299 - -1.9 899,299 - +0.3 899,299 - +0.4 899,299 - -0.3 899,299 - +1.9 899,374 + +1.2 899,374 + -0.1 899,374 + -0.5 899,375 - +0.0 899,375 - -0.1 899,746 + MPMX19_03487 0.43 +0.9 899,746 + MPMX19_03487 0.43 -0.5 899,746 + MPMX19_03487 0.43 -1.2 899,746 + MPMX19_03487 0.43 -0.4 899,746 + MPMX19_03487 0.43 +0.6 899,746 + MPMX19_03487 0.43 +0.5 899,746 + MPMX19_03487 0.43 -0.3 899,746 + MPMX19_03487 0.43 +0.5 899,746 + MPMX19_03487 0.43 -0.5 899,746 + MPMX19_03487 0.43 -1.4 899,746 + MPMX19_03487 0.43 -0.7 899,746 + MPMX19_03487 0.43 -0.9 899,747 - MPMX19_03487 0.43 +0.1 899,747 - MPMX19_03487 0.43 -0.2 899,747 - MPMX19_03487 0.43 +1.1 899,747 - MPMX19_03487 0.43 +0.4 899,747 - MPMX19_03487 0.43 -0.5 899,747 - MPMX19_03487 0.43 -1.7 899,747 - MPMX19_03487 0.43 -0.2 899,747 - MPMX19_03487 0.43 +0.1 899,747 - MPMX19_03487 0.43 -0.5 899,747 - MPMX19_03487 0.43 -0.3 899,851 + MPMX19_03487 0.54 -2.9 899,851 + MPMX19_03487 0.54 -2.7 899,851 + MPMX19_03487 0.54 -2.6 899,851 + MPMX19_03487 0.54 +0.1 899,851 + MPMX19_03487 0.54 -2.8 899,852 - MPMX19_03487 0.55 -0.4 899,852 - MPMX19_03487 0.55 -1.0 899,884 + MPMX19_03487 0.58 -1.5 899,885 - MPMX19_03487 0.58 -0.5 899,896 + MPMX19_03487 0.59 -0.7 899,897 - MPMX19_03487 0.59 -0.9 899,929 + MPMX19_03487 0.63 +0.6 899,929 + MPMX19_03487 0.63 +1.0 899,929 + MPMX19_03487 0.63 +0.3 899,929 + MPMX19_03487 0.63 -1.5 899,929 + MPMX19_03487 0.63 -0.1 899,929 + MPMX19_03487 0.63 -0.1 899,929 + MPMX19_03487 0.63 -0.8 899,929 + MPMX19_03487 0.63 -0.3 899,929 + MPMX19_03487 0.63 -0.2 899,929 + MPMX19_03487 0.63 +0.5 899,929 + MPMX19_03487 0.63 -0.6 899,929 + MPMX19_03487 0.63 -0.7 899,930 - MPMX19_03487 0.63 -0.3 899,930 - MPMX19_03487 0.63 +0.6 899,930 - MPMX19_03487 0.63 -0.4 899,930 - MPMX19_03487 0.63 +0.5 899,930 - MPMX19_03487 0.63 -1.0 899,930 - MPMX19_03487 0.63 +0.7 899,930 - MPMX19_03487 0.63 -0.1 899,930 - MPMX19_03487 0.63 +0.0 899,930 - MPMX19_03487 0.63 +0.1 899,932 + MPMX19_03487 0.63 -1.9 899,933 - MPMX19_03487 0.63 +0.8 899,933 - MPMX19_03487 0.63 +0.1 899,933 - MPMX19_03487 0.63 -0.8 899,933 - MPMX19_03487 0.63 +0.6 899,933 - MPMX19_03487 0.63 +1.0 900,002 - MPMX19_03487 0.71 -0.7 900,002 - MPMX19_03487 0.71 +0.5 900,002 - MPMX19_03487 0.71 +0.4 900,004 + MPMX19_03487 0.71 -0.1 900,119 - MPMX19_03487 0.83 -0.5 900,365 + +0.2 900,365 + -1.4 900,365 + +0.9 900,365 + -1.1 900,365 + -1.3 900,366 - -0.1 900,366 - +0.7 900,366 - -1.2 900,366 - -0.9 900,366 - -0.5 900,366 - +0.6 900,366 - -0.9 900,366 - +0.9 900,490 + +0.2 900,491 - -0.5 900,491 - -0.4 900,491 - +0.7 900,491 - -0.2 900,641 + MPMX19_03488 0.18 +0.8 900,641 + MPMX19_03488 0.18 +0.3 900,641 + MPMX19_03488 0.18 -1.3 900,641 + MPMX19_03488 0.18 +0.7 900,641 + MPMX19_03488 0.18 +0.3 900,642 - MPMX19_03488 0.18 -1.5 900,642 - MPMX19_03488 0.18 -1.5 900,642 - MPMX19_03488 0.18 -1.2 900,642 - MPMX19_03488 0.18 +0.0 900,642 - MPMX19_03488 0.18 -2.0 900,677 + MPMX19_03488 0.20 +0.2 900,677 + MPMX19_03488 0.20 +0.9 900,677 + MPMX19_03488 0.20 -0.9 900,677 + MPMX19_03488 0.20 -0.3 900,677 + MPMX19_03488 0.20 -0.1 900,677 + MPMX19_03488 0.20 +2.6 900,678 - MPMX19_03488 0.20 -0.3 900,678 - MPMX19_03488 0.20 -0.9 900,678 - MPMX19_03488 0.20 -0.3 900,678 - MPMX19_03488 0.20 +1.5 900,678 - MPMX19_03488 0.20 +0.1 900,678 - MPMX19_03488 0.20 -1.7 900,752 + MPMX19_03488 0.24 +0.9 900,752 + MPMX19_03488 0.24 -1.1 900,752 + MPMX19_03488 0.24 -0.3 900,752 + MPMX19_03488 0.24 -0.9 900,752 + MPMX19_03488 0.24 -0.3 900,752 + MPMX19_03488 0.24 +0.9 900,752 + MPMX19_03488 0.24 +0.3 900,752 + MPMX19_03488 0.24 +0.8 900,752 + MPMX19_03488 0.24 -1.1 900,752 + MPMX19_03488 0.24 -0.7 900,752 + MPMX19_03488 0.24 -2.3 900,752 + MPMX19_03488 0.24 +1.2 900,752 + MPMX19_03488 0.24 +0.0 900,753 - MPMX19_03488 0.24 -1.0 900,753 - MPMX19_03488 0.24 +0.0 900,753 - MPMX19_03488 0.24 -0.1 900,753 - MPMX19_03488 0.24 +0.1 900,753 - MPMX19_03488 0.24 -0.0 900,753 - MPMX19_03488 0.24 -1.9 900,753 - MPMX19_03488 0.24 -0.1 900,753 - MPMX19_03488 0.24 +0.1 900,962 + MPMX19_03488 0.36 -0.1 900,962 + MPMX19_03488 0.36 +1.2 900,962 + MPMX19_03488 0.36 -0.9 901,265 + MPMX19_03488 0.53 -2.6 901,265 + MPMX19_03488 0.53 +0.9 901,265 + MPMX19_03488 0.53 -1.3 901,266 - MPMX19_03488 0.53 -2.1 901,266 - MPMX19_03488 0.53 -0.2
Or see this region's nucleotide sequence