Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03481

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03479 and MPMX19_03480 are separated by 142 nucleotidesMPMX19_03480 and MPMX19_03481 are separated by 53 nucleotidesMPMX19_03481 and MPMX19_03482 are separated by 14 nucleotides MPMX19_03479: MPMX19_03479 - Bifunctional NMN adenylyltransferase/Nudix hydrolase, at 891,272 to 892,405 _03479 MPMX19_03480: MPMX19_03480 - hypothetical protein, at 892,548 to 892,889 _03480 MPMX19_03481: MPMX19_03481 - hypothetical protein, at 892,943 to 893,512 _03481 MPMX19_03482: MPMX19_03482 - Gamma-glutamylputrescine oxidoreductase, at 893,527 to 894,840 _03482 Position (kb) 892 893 894Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 891.951 kb on + strand, within MPMX19_03479at 891.951 kb on + strand, within MPMX19_03479at 891.951 kb on + strand, within MPMX19_03479at 891.951 kb on + strand, within MPMX19_03479at 891.951 kb on + strand, within MPMX19_03479at 891.951 kb on + strand, within MPMX19_03479at 891.952 kb on - strand, within MPMX19_03479at 891.952 kb on - strand, within MPMX19_03479at 891.954 kb on + strand, within MPMX19_03479at 891.954 kb on + strand, within MPMX19_03479at 891.954 kb on + strand, within MPMX19_03479at 891.954 kb on + strand, within MPMX19_03479at 891.954 kb on + strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 891.955 kb on - strand, within MPMX19_03479at 892.084 kb on - strand, within MPMX19_03479at 892.084 kb on - strand, within MPMX19_03479at 892.442 kb on + strandat 892.462 kb on + strandat 892.549 kb on + strandat 892.549 kb on + strandat 892.549 kb on + strandat 892.550 kb on - strandat 892.591 kb on + strand, within MPMX19_03480at 892.591 kb on + strand, within MPMX19_03480at 892.591 kb on + strand, within MPMX19_03480at 892.591 kb on + strand, within MPMX19_03480at 892.591 kb on + strand, within MPMX19_03480at 892.591 kb on + strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.592 kb on - strand, within MPMX19_03480at 892.593 kb on - strand, within MPMX19_03480at 892.846 kb on + strand, within MPMX19_03480at 892.846 kb on + strand, within MPMX19_03480at 892.846 kb on + strand, within MPMX19_03480at 892.846 kb on + strand, within MPMX19_03480at 892.846 kb on + strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 892.847 kb on - strand, within MPMX19_03480at 893.184 kb on + strand, within MPMX19_03481at 893.184 kb on + strand, within MPMX19_03481at 893.184 kb on + strand, within MPMX19_03481at 893.184 kb on + strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.185 kb on - strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.235 kb on + strand, within MPMX19_03481at 893.236 kb on - strand, within MPMX19_03481at 893.280 kb on + strand, within MPMX19_03481at 893.280 kb on + strand, within MPMX19_03481at 893.280 kb on + strand, within MPMX19_03481at 893.280 kb on + strand, within MPMX19_03481at 893.281 kb on - strand, within MPMX19_03481at 893.281 kb on - strand, within MPMX19_03481at 893.281 kb on - strand, within MPMX19_03481at 893.281 kb on - strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.313 kb on + strand, within MPMX19_03481at 893.586 kb on + strandat 893.586 kb on + strandat 893.587 kb on - strandat 893.587 kb on - strandat 893.587 kb on - strandat 893.587 kb on - strandat 893.588 kb on + strandat 893.588 kb on + strandat 893.588 kb on + strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.589 kb on - strandat 893.619 kb on + strandat 893.801 kb on + strand, within MPMX19_03482at 893.802 kb on - strand, within MPMX19_03482at 893.969 kb on + strand, within MPMX19_03482at 893.969 kb on + strand, within MPMX19_03482at 893.969 kb on + strand, within MPMX19_03482at 893.969 kb on + strand, within MPMX19_03482at 893.969 kb on + strand, within MPMX19_03482at 893.969 kb on + strand, within MPMX19_03482at 893.969 kb on + strand, within MPMX19_03482at 893.970 kb on - strand, within MPMX19_03482at 893.970 kb on - strand, within MPMX19_03482at 893.970 kb on - strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.059 kb on + strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.060 kb on - strand, within MPMX19_03482at 894.113 kb on + strand, within MPMX19_03482at 894.285 kb on - strand, within MPMX19_03482at 894.285 kb on - strand, within MPMX19_03482at 894.285 kb on - strand, within MPMX19_03482at 894.285 kb on - strand, within MPMX19_03482at 894.335 kb on + strand, within MPMX19_03482at 894.335 kb on + strand, within MPMX19_03482at 894.336 kb on - strand, within MPMX19_03482at 894.336 kb on - strand, within MPMX19_03482at 894.380 kb on + strand, within MPMX19_03482at 894.380 kb on + strand, within MPMX19_03482at 894.380 kb on + strand, within MPMX19_03482at 894.380 kb on + strand, within MPMX19_03482at 894.381 kb on - strand, within MPMX19_03482at 894.381 kb on - strand, within MPMX19_03482at 894.381 kb on - strand, within MPMX19_03482at 894.381 kb on - strand, within MPMX19_03482at 894.381 kb on - strand, within MPMX19_03482at 894.381 kb on - strand, within MPMX19_03482at 894.392 kb on + strand, within MPMX19_03482at 894.392 kb on + strand, within MPMX19_03482at 894.392 kb on + strand, within MPMX19_03482at 894.392 kb on + strand, within MPMX19_03482at 894.392 kb on + strand, within MPMX19_03482at 894.393 kb on - strand, within MPMX19_03482at 894.398 kb on + strand, within MPMX19_03482at 894.398 kb on + strand, within MPMX19_03482at 894.398 kb on + strand, within MPMX19_03482at 894.398 kb on + strand, within MPMX19_03482at 894.398 kb on + strand, within MPMX19_03482at 894.399 kb on - strand, within MPMX19_03482at 894.399 kb on - strand, within MPMX19_03482

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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891,951 + MPMX19_03479 0.60 -0.2
891,951 + MPMX19_03479 0.60 +0.5
891,951 + MPMX19_03479 0.60 +0.2
891,951 + MPMX19_03479 0.60 +1.5
891,951 + MPMX19_03479 0.60 +0.2
891,951 + MPMX19_03479 0.60 -1.4
891,952 - MPMX19_03479 0.60 +1.3
891,952 - MPMX19_03479 0.60 +1.7
891,954 + MPMX19_03479 0.60 +0.0
891,954 + MPMX19_03479 0.60 -2.0
891,954 + MPMX19_03479 0.60 +0.3
891,954 + MPMX19_03479 0.60 -3.5
891,954 + MPMX19_03479 0.60 +0.6
891,955 - MPMX19_03479 0.60 -2.0
891,955 - MPMX19_03479 0.60 +0.3
891,955 - MPMX19_03479 0.60 +1.9
891,955 - MPMX19_03479 0.60 +0.0
891,955 - MPMX19_03479 0.60 -1.5
891,955 - MPMX19_03479 0.60 +0.9
891,955 - MPMX19_03479 0.60 -0.9
891,955 - MPMX19_03479 0.60 +0.2
891,955 - MPMX19_03479 0.60 +0.6
891,955 - MPMX19_03479 0.60 +0.7
892,084 - MPMX19_03479 0.72 -0.1
892,084 - MPMX19_03479 0.72 +0.5
892,442 + -1.3
892,462 + +0.8
892,549 + -0.1
892,549 + -0.7
892,549 + -0.3
892,550 - +0.1
892,591 + MPMX19_03480 0.13 -0.5
892,591 + MPMX19_03480 0.13 +0.0
892,591 + MPMX19_03480 0.13 -1.0
892,591 + MPMX19_03480 0.13 -1.7
892,591 + MPMX19_03480 0.13 -0.1
892,591 + MPMX19_03480 0.13 +0.5
892,592 - MPMX19_03480 0.13 +0.0
892,592 - MPMX19_03480 0.13 +0.9
892,592 - MPMX19_03480 0.13 +0.6
892,592 - MPMX19_03480 0.13 -0.3
892,592 - MPMX19_03480 0.13 -0.7
892,592 - MPMX19_03480 0.13 +1.0
892,592 - MPMX19_03480 0.13 -1.5
892,593 - MPMX19_03480 0.13 -1.7
892,846 + MPMX19_03480 0.87 -1.7
892,846 + MPMX19_03480 0.87 -1.2
892,846 + MPMX19_03480 0.87 +0.2
892,846 + MPMX19_03480 0.87 -1.2
892,846 + MPMX19_03480 0.87 +0.0
892,847 - MPMX19_03480 0.87 -0.2
892,847 - MPMX19_03480 0.87 +0.3
892,847 - MPMX19_03480 0.87 +1.2
892,847 - MPMX19_03480 0.87 -1.9
892,847 - MPMX19_03480 0.87 -0.7
892,847 - MPMX19_03480 0.87 +1.6
892,847 - MPMX19_03480 0.87 -0.8
893,184 + MPMX19_03481 0.42 +2.5
893,184 + MPMX19_03481 0.42 +0.1
893,184 + MPMX19_03481 0.42 +0.8
893,184 + MPMX19_03481 0.42 -1.0
893,185 - MPMX19_03481 0.42 +0.7
893,185 - MPMX19_03481 0.42 -0.7
893,185 - MPMX19_03481 0.42 -0.2
893,185 - MPMX19_03481 0.42 -0.5
893,185 - MPMX19_03481 0.42 -0.9
893,185 - MPMX19_03481 0.42 +0.0
893,185 - MPMX19_03481 0.42 -0.6
893,185 - MPMX19_03481 0.42 -0.3
893,235 + MPMX19_03481 0.51 -0.9
893,235 + MPMX19_03481 0.51 -0.4
893,235 + MPMX19_03481 0.51 +0.0
893,235 + MPMX19_03481 0.51 +0.2
893,235 + MPMX19_03481 0.51 +0.1
893,235 + MPMX19_03481 0.51 -0.2
893,236 - MPMX19_03481 0.51 -1.4
893,280 + MPMX19_03481 0.59 +0.1
893,280 + MPMX19_03481 0.59 -0.1
893,280 + MPMX19_03481 0.59 -1.1
893,280 + MPMX19_03481 0.59 -0.0
893,281 - MPMX19_03481 0.59 -1.9
893,281 - MPMX19_03481 0.59 -0.5
893,281 - MPMX19_03481 0.59 -1.1
893,281 - MPMX19_03481 0.59 -1.4
893,313 + MPMX19_03481 0.65 -1.1
893,313 + MPMX19_03481 0.65 +2.2
893,313 + MPMX19_03481 0.65 -0.7
893,313 + MPMX19_03481 0.65 -0.3
893,313 + MPMX19_03481 0.65 -1.9
893,313 + MPMX19_03481 0.65 -0.3
893,313 + MPMX19_03481 0.65 +0.1
893,586 + -1.1
893,586 + -1.3
893,587 - -1.3
893,587 - -1.9
893,587 - +0.5
893,587 - -0.1
893,588 + +0.8
893,588 + +1.1
893,588 + -1.9
893,589 - +0.1
893,589 - +1.2
893,589 - +0.6
893,589 - +0.1
893,589 - +0.1
893,589 - +1.9
893,589 - -1.7
893,589 - +0.5
893,589 - -0.6
893,619 + +0.8
893,801 + MPMX19_03482 0.21 -0.9
893,802 - MPMX19_03482 0.21 +2.5
893,969 + MPMX19_03482 0.34 -0.7
893,969 + MPMX19_03482 0.34 -1.3
893,969 + MPMX19_03482 0.34 -0.3
893,969 + MPMX19_03482 0.34 +0.3
893,969 + MPMX19_03482 0.34 -1.0
893,969 + MPMX19_03482 0.34 +0.2
893,969 + MPMX19_03482 0.34 -1.0
893,970 - MPMX19_03482 0.34 -3.0
893,970 - MPMX19_03482 0.34 -1.2
893,970 - MPMX19_03482 0.34 +0.9
894,059 + MPMX19_03482 0.40 -0.7
894,059 + MPMX19_03482 0.40 +0.2
894,059 + MPMX19_03482 0.40 -0.3
894,059 + MPMX19_03482 0.40 -0.0
894,059 + MPMX19_03482 0.40 +0.0
894,059 + MPMX19_03482 0.40 -2.3
894,059 + MPMX19_03482 0.40 -0.7
894,059 + MPMX19_03482 0.40 +0.2
894,059 + MPMX19_03482 0.40 +0.7
894,059 + MPMX19_03482 0.40 -0.9
894,059 + MPMX19_03482 0.40 +0.2
894,059 + MPMX19_03482 0.40 -0.0
894,059 + MPMX19_03482 0.40 +0.7
894,059 + MPMX19_03482 0.40 -0.5
894,059 + MPMX19_03482 0.40 -0.6
894,059 + MPMX19_03482 0.40 +1.1
894,059 + MPMX19_03482 0.40 -0.9
894,059 + MPMX19_03482 0.40 +0.1
894,059 + MPMX19_03482 0.40 -0.1
894,059 + MPMX19_03482 0.40 -1.9
894,059 + MPMX19_03482 0.40 +0.8
894,059 + MPMX19_03482 0.40 -0.3
894,060 - MPMX19_03482 0.41 +0.5
894,060 - MPMX19_03482 0.41 -0.4
894,060 - MPMX19_03482 0.41 -0.2
894,060 - MPMX19_03482 0.41 +0.3
894,060 - MPMX19_03482 0.41 -0.4
894,060 - MPMX19_03482 0.41 -0.8
894,060 - MPMX19_03482 0.41 +0.3
894,060 - MPMX19_03482 0.41 -0.3
894,060 - MPMX19_03482 0.41 -0.8
894,060 - MPMX19_03482 0.41 +0.1
894,060 - MPMX19_03482 0.41 +0.8
894,060 - MPMX19_03482 0.41 -0.1
894,060 - MPMX19_03482 0.41 +0.2
894,060 - MPMX19_03482 0.41 -0.3
894,060 - MPMX19_03482 0.41 -0.3
894,060 - MPMX19_03482 0.41 -1.3
894,060 - MPMX19_03482 0.41 +0.5
894,060 - MPMX19_03482 0.41 -1.1
894,060 - MPMX19_03482 0.41 +0.3
894,060 - MPMX19_03482 0.41 -0.4
894,060 - MPMX19_03482 0.41 +0.4
894,113 + MPMX19_03482 0.45 -0.1
894,285 - MPMX19_03482 0.58 -0.6
894,285 - MPMX19_03482 0.58 -0.8
894,285 - MPMX19_03482 0.58 -0.3
894,285 - MPMX19_03482 0.58 +0.2
894,335 + MPMX19_03482 0.61 +0.5
894,335 + MPMX19_03482 0.61 +1.2
894,336 - MPMX19_03482 0.62 -1.7
894,336 - MPMX19_03482 0.62 +0.3
894,380 + MPMX19_03482 0.65 -0.1
894,380 + MPMX19_03482 0.65 -1.7
894,380 + MPMX19_03482 0.65 +1.9
894,380 + MPMX19_03482 0.65 -1.3
894,381 - MPMX19_03482 0.65 -0.2
894,381 - MPMX19_03482 0.65 +0.3
894,381 - MPMX19_03482 0.65 +0.3
894,381 - MPMX19_03482 0.65 -1.5
894,381 - MPMX19_03482 0.65 -1.1
894,381 - MPMX19_03482 0.65 -0.3
894,392 + MPMX19_03482 0.66 +0.5
894,392 + MPMX19_03482 0.66 -2.1
894,392 + MPMX19_03482 0.66 -1.3
894,392 + MPMX19_03482 0.66 -0.0
894,392 + MPMX19_03482 0.66 +0.5
894,393 - MPMX19_03482 0.66 +0.0
894,398 + MPMX19_03482 0.66 -1.1
894,398 + MPMX19_03482 0.66 -0.4
894,398 + MPMX19_03482 0.66 -0.7
894,398 + MPMX19_03482 0.66 +0.5
894,398 + MPMX19_03482 0.66 -0.8
894,399 - MPMX19_03482 0.66 +2.7
894,399 - MPMX19_03482 0.66 +0.8

Or see this region's nucleotide sequence