Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03242 and MPMX19_03243 are separated by 368 nucleotides MPMX19_03243 and MPMX19_03244 are separated by 204 nucleotides
MPMX19_03242: MPMX19_03242 - ABC transporter ATP-binding/permease protein YojI, at 562,812 to 564,467
_03242
MPMX19_03243: MPMX19_03243 - hypothetical protein, at 564,836 to 565,849
_03243
MPMX19_03244: MPMX19_03244 - D-alanine--D-alanyl carrier protein ligase, at 566,054 to 583,993
_03244
Position (kb) 564
565
566 Strain fitness (log2 ratio) -2
-1
0
1
2 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.950 kb on + strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 563.951 kb on - strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.022 kb on + strand, within MPMX19_03242 at 564.023 kb on - strand, within MPMX19_03242 at 564.311 kb on + strand at 564.311 kb on + strand at 564.312 kb on - strand at 564.312 kb on - strand at 564.549 kb on + strand at 564.550 kb on - strand at 564.550 kb on - strand at 564.740 kb on - strand at 564.740 kb on - strand at 564.748 kb on + strand at 564.749 kb on - strand at 564.749 kb on - strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.797 kb on + strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.798 kb on - strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.799 kb on + strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.800 kb on - strand at 564.836 kb on - strand at 564.836 kb on - strand at 564.836 kb on - strand at 565.303 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.304 kb on + strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.305 kb on - strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.355 kb on + strand, within MPMX19_03243 at 565.356 kb on - strand, within MPMX19_03243 at 565.356 kb on - strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.685 kb on + strand, within MPMX19_03243 at 565.686 kb on - strand, within MPMX19_03243 at 565.686 kb on - strand, within MPMX19_03243 at 565.686 kb on - strand, within MPMX19_03243 at 565.686 kb on - strand, within MPMX19_03243 at 565.748 kb on + strand at 565.748 kb on + strand at 565.748 kb on + strand at 565.748 kb on + strand at 565.748 kb on + strand at 565.749 kb on - strand at 565.749 kb on - strand at 565.749 kb on - strand at 565.749 kb on - strand at 565.906 kb on + strand at 565.933 kb on + strand at 566.272 kb on + strand at 566.272 kb on + strand at 566.273 kb on - strand at 566.273 kb on - strand at 566.657 kb on + strand at 566.657 kb on + strand at 566.657 kb on + strand at 566.657 kb on + strand at 566.657 kb on + strand at 566.658 kb on - strand at 566.658 kb on - strand at 566.658 kb on - strand at 566.712 kb on - strand at 566.712 kb on - strand at 566.720 kb on + strand at 566.720 kb on + strand at 566.720 kb on + strand at 566.720 kb on + strand at 566.721 kb on - strand at 566.777 kb on + strand at 566.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 563,950 + MPMX19_03242 0.69 -0.5 563,950 + MPMX19_03242 0.69 -0.2 563,950 + MPMX19_03242 0.69 +0.4 563,950 + MPMX19_03242 0.69 -1.0 563,950 + MPMX19_03242 0.69 +1.1 563,950 + MPMX19_03242 0.69 +0.0 563,950 + MPMX19_03242 0.69 -0.7 563,950 + MPMX19_03242 0.69 -1.8 563,951 - MPMX19_03242 0.69 +2.3 563,951 - MPMX19_03242 0.69 +0.0 563,951 - MPMX19_03242 0.69 -0.1 563,951 - MPMX19_03242 0.69 -1.0 563,951 - MPMX19_03242 0.69 +0.1 563,951 - MPMX19_03242 0.69 -0.4 563,951 - MPMX19_03242 0.69 -0.1 564,022 + MPMX19_03242 0.73 -0.6 564,022 + MPMX19_03242 0.73 -0.5 564,022 + MPMX19_03242 0.73 +0.8 564,023 - MPMX19_03242 0.73 -0.8 564,311 + +0.0 564,311 + -0.3 564,312 - -0.5 564,312 - +0.3 564,549 + -0.8 564,550 - -0.3 564,550 - +1.5 564,740 - -1.3 564,740 - -0.2 564,748 + -1.3 564,749 - +0.9 564,749 - -0.1 564,797 + -0.5 564,797 + +0.4 564,797 + +1.5 564,797 + +0.3 564,797 + -0.3 564,797 + +0.9 564,797 + -0.9 564,797 + -0.7 564,797 + +0.2 564,797 + -0.6 564,798 - -0.7 564,798 - -0.3 564,798 - +0.5 564,798 - -1.3 564,798 - +2.5 564,799 + -1.1 564,799 + +0.5 564,799 + -0.1 564,799 + -1.3 564,799 + +0.3 564,799 + +1.2 564,799 + -0.7 564,799 + +0.2 564,799 + -0.3 564,799 + +0.2 564,799 + -0.5 564,799 + +0.0 564,800 - +1.0 564,800 - +0.3 564,800 - -0.2 564,800 - +1.3 564,800 - -0.0 564,800 - +0.3 564,800 - +0.6 564,836 - +0.8 564,836 - +0.7 564,836 - +0.2 565,303 + MPMX19_03243 0.46 +0.4 565,304 + MPMX19_03243 0.46 +0.2 565,304 + MPMX19_03243 0.46 -0.7 565,304 + MPMX19_03243 0.46 -0.5 565,304 + MPMX19_03243 0.46 +0.2 565,304 + MPMX19_03243 0.46 -0.9 565,304 + MPMX19_03243 0.46 +0.0 565,304 + MPMX19_03243 0.46 -1.0 565,304 + MPMX19_03243 0.46 -0.1 565,304 + MPMX19_03243 0.46 -0.5 565,304 + MPMX19_03243 0.46 -1.5 565,305 - MPMX19_03243 0.46 -0.7 565,305 - MPMX19_03243 0.46 -0.9 565,305 - MPMX19_03243 0.46 +0.2 565,305 - MPMX19_03243 0.46 -0.1 565,305 - MPMX19_03243 0.46 +1.2 565,305 - MPMX19_03243 0.46 -0.1 565,305 - MPMX19_03243 0.46 +0.7 565,305 - MPMX19_03243 0.46 +0.5 565,355 + MPMX19_03243 0.51 -0.4 565,355 + MPMX19_03243 0.51 -0.7 565,355 + MPMX19_03243 0.51 +0.3 565,356 - MPMX19_03243 0.51 -0.6 565,356 - MPMX19_03243 0.51 +0.0 565,685 + MPMX19_03243 0.84 +0.9 565,685 + MPMX19_03243 0.84 -0.7 565,685 + MPMX19_03243 0.84 -2.0 565,685 + MPMX19_03243 0.84 +2.2 565,685 + MPMX19_03243 0.84 +0.9 565,685 + MPMX19_03243 0.84 +1.8 565,685 + MPMX19_03243 0.84 +0.0 565,685 + MPMX19_03243 0.84 +0.6 565,686 - MPMX19_03243 0.84 +1.0 565,686 - MPMX19_03243 0.84 -0.6 565,686 - MPMX19_03243 0.84 -0.3 565,686 - MPMX19_03243 0.84 -1.2 565,748 + -0.5 565,748 + +0.5 565,748 + -0.4 565,748 + -2.5 565,748 + -0.9 565,749 - -0.9 565,749 - -0.3 565,749 - -0.3 565,749 - -1.3 565,906 + +0.1 565,933 + -0.7 566,272 + +0.1 566,272 + -0.9 566,273 - -2.0 566,273 - -1.1 566,657 + +0.1 566,657 + +0.5 566,657 + -1.2 566,657 + -2.7 566,657 + +1.0 566,658 - +0.4 566,658 - -1.4 566,658 - +1.6 566,712 - +0.3 566,712 - +0.8 566,720 + +1.5 566,720 + -0.3 566,720 + -0.7 566,720 + +0.3 566,721 - -1.3 566,777 + +0.5 566,778 - +0.0
Or see this region's nucleotide sequence