Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02981 and MPMX19_02982 are separated by 456 nucleotides MPMX19_02982 and MPMX19_02983 are separated by 285 nucleotides
MPMX19_02981: MPMX19_02981 - Hydrogen cyanide synthase subunit HcnC, at 242,677 to 243,810
_02981
MPMX19_02982: MPMX19_02982 - Octopine catabolism/uptake operon regulatory protein OccR, at 244,267 to 245,220
_02982
MPMX19_02983: MPMX19_02983 - hypothetical protein, at 245,506 to 246,555
_02983
Position (kb) 244
245
246 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.347 kb on + strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.348 kb on - strand, within MPMX19_02981 at 243.420 kb on - strand, within MPMX19_02981 at 243.611 kb on + strand, within MPMX19_02981 at 243.612 kb on - strand, within MPMX19_02981 at 243.783 kb on - strand at 243.783 kb on - strand at 243.783 kb on - strand at 243.783 kb on - strand at 243.880 kb on + strand at 243.881 kb on - strand at 243.881 kb on - strand at 243.885 kb on + strand at 243.885 kb on + strand at 243.885 kb on + strand at 243.886 kb on - strand at 243.933 kb on + strand at 243.947 kb on - strand at 243.947 kb on - strand at 243.947 kb on - strand at 243.948 kb on + strand at 243.981 kb on - strand at 243.981 kb on - strand at 243.981 kb on - strand at 243.981 kb on - strand at 243.992 kb on + strand at 243.992 kb on + strand at 243.992 kb on + strand at 243.993 kb on - strand at 244.104 kb on - strand at 244.390 kb on + strand, within MPMX19_02982 at 244.390 kb on + strand, within MPMX19_02982 at 244.390 kb on + strand, within MPMX19_02982 at 244.390 kb on + strand, within MPMX19_02982 at 244.391 kb on - strand, within MPMX19_02982 at 244.391 kb on - strand, within MPMX19_02982 at 244.391 kb on - strand, within MPMX19_02982 at 244.462 kb on + strand, within MPMX19_02982 at 244.462 kb on + strand, within MPMX19_02982 at 244.462 kb on + strand, within MPMX19_02982 at 244.462 kb on + strand, within MPMX19_02982 at 244.463 kb on - strand, within MPMX19_02982 at 244.463 kb on - strand, within MPMX19_02982 at 244.463 kb on - strand, within MPMX19_02982 at 244.594 kb on + strand, within MPMX19_02982 at 245.011 kb on + strand, within MPMX19_02982 at 245.011 kb on + strand, within MPMX19_02982 at 245.011 kb on + strand, within MPMX19_02982 at 245.011 kb on + strand, within MPMX19_02982 at 245.011 kb on + strand, within MPMX19_02982 at 245.011 kb on + strand, within MPMX19_02982 at 245.011 kb on + strand, within MPMX19_02982 at 245.011 kb on + strand, within MPMX19_02982 at 245.012 kb on - strand, within MPMX19_02982 at 245.012 kb on - strand, within MPMX19_02982 at 245.012 kb on - strand, within MPMX19_02982 at 245.012 kb on - strand, within MPMX19_02982 at 245.012 kb on - strand, within MPMX19_02982 at 245.012 kb on - strand, within MPMX19_02982 at 245.261 kb on + strand at 245.356 kb on - strand at 245.356 kb on - strand at 245.376 kb on + strand at 245.377 kb on - strand at 245.492 kb on - strand at 245.599 kb on + strand at 245.599 kb on + strand at 245.599 kb on + strand at 245.599 kb on + strand at 245.599 kb on + strand at 245.599 kb on + strand at 245.599 kb on + strand at 245.599 kb on + strand at 245.599 kb on + strand at 245.599 kb on + strand at 245.599 kb on + strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.600 kb on - strand at 245.612 kb on - strand, within MPMX19_02983 at 245.612 kb on - strand, within MPMX19_02983 at 245.689 kb on + strand, within MPMX19_02983 at 245.689 kb on + strand, within MPMX19_02983 at 245.689 kb on + strand, within MPMX19_02983 at 245.689 kb on + strand, within MPMX19_02983 at 245.690 kb on - strand, within MPMX19_02983 at 245.690 kb on - strand, within MPMX19_02983 at 245.690 kb on - strand, within MPMX19_02983 at 245.785 kb on + strand, within MPMX19_02983 at 245.785 kb on + strand, within MPMX19_02983 at 245.785 kb on + strand, within MPMX19_02983 at 245.785 kb on + strand, within MPMX19_02983 at 245.785 kb on + strand, within MPMX19_02983 at 245.785 kb on + strand, within MPMX19_02983 at 245.785 kb on + strand, within MPMX19_02983 at 245.785 kb on + strand, within MPMX19_02983 at 245.785 kb on + strand, within MPMX19_02983 at 245.786 kb on - strand, within MPMX19_02983 at 245.786 kb on - strand, within MPMX19_02983 at 245.786 kb on - strand, within MPMX19_02983 at 245.836 kb on + strand, within MPMX19_02983 at 245.836 kb on + strand, within MPMX19_02983 at 245.837 kb on - strand, within MPMX19_02983 at 245.848 kb on + strand, within MPMX19_02983 at 245.848 kb on + strand, within MPMX19_02983 at 245.848 kb on + strand, within MPMX19_02983 at 245.848 kb on + strand, within MPMX19_02983 at 245.848 kb on + strand, within MPMX19_02983 at 245.849 kb on - strand, within MPMX19_02983 at 245.849 kb on - strand, within MPMX19_02983 at 245.849 kb on - strand, within MPMX19_02983 at 245.849 kb on - strand, within MPMX19_02983 at 245.914 kb on + strand, within MPMX19_02983 at 245.914 kb on + strand, within MPMX19_02983 at 245.915 kb on - strand, within MPMX19_02983 at 245.915 kb on - strand, within MPMX19_02983 at 245.926 kb on + strand, within MPMX19_02983 at 245.926 kb on + strand, within MPMX19_02983 at 245.926 kb on + strand, within MPMX19_02983 at 245.926 kb on + strand, within MPMX19_02983 at 245.927 kb on - strand, within MPMX19_02983 at 245.927 kb on - strand, within MPMX19_02983 at 245.927 kb on - strand, within MPMX19_02983 at 246.025 kb on + strand, within MPMX19_02983 at 246.025 kb on + strand, within MPMX19_02983 at 246.025 kb on + strand, within MPMX19_02983 at 246.026 kb on - strand, within MPMX19_02983 at 246.026 kb on - strand, within MPMX19_02983 at 246.026 kb on - strand, within MPMX19_02983 at 246.026 kb on - strand, within MPMX19_02983 at 246.026 kb on - strand, within MPMX19_02983 at 246.026 kb on - strand, within MPMX19_02983 at 246.026 kb on - strand, within MPMX19_02983 at 246.026 kb on - strand, within MPMX19_02983 at 246.026 kb on - strand, within MPMX19_02983 at 246.026 kb on - strand, within MPMX19_02983 at 246.026 kb on - strand, within MPMX19_02983 at 246.136 kb on + strand, within MPMX19_02983 at 246.136 kb on + strand, within MPMX19_02983 at 246.136 kb on + strand, within MPMX19_02983 at 246.137 kb on - strand, within MPMX19_02983 at 246.137 kb on - strand, within MPMX19_02983 at 246.137 kb on - strand, within MPMX19_02983 at 246.137 kb on - strand, within MPMX19_02983 at 246.137 kb on - strand, within MPMX19_02983
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 243,347 + MPMX19_02981 0.59 -0.6 243,347 + MPMX19_02981 0.59 -0.5 243,347 + MPMX19_02981 0.59 +0.5 243,347 + MPMX19_02981 0.59 -1.6 243,347 + MPMX19_02981 0.59 -1.0 243,347 + MPMX19_02981 0.59 -0.8 243,347 + MPMX19_02981 0.59 -0.8 243,347 + MPMX19_02981 0.59 -1.3 243,348 - MPMX19_02981 0.59 -1.7 243,348 - MPMX19_02981 0.59 -0.6 243,348 - MPMX19_02981 0.59 -2.4 243,348 - MPMX19_02981 0.59 -1.1 243,348 - MPMX19_02981 0.59 +0.2 243,348 - MPMX19_02981 0.59 +0.7 243,348 - MPMX19_02981 0.59 -0.8 243,420 - MPMX19_02981 0.66 +0.2 243,611 + MPMX19_02981 0.82 -1.8 243,612 - MPMX19_02981 0.82 -1.9 243,783 - -0.3 243,783 - +1.2 243,783 - -1.9 243,783 - -0.9 243,880 + -1.7 243,881 - -0.6 243,881 - -1.3 243,885 + -3.3 243,885 + -2.4 243,885 + -1.5 243,886 - +0.9 243,933 + -0.8 243,947 - -0.4 243,947 - -0.5 243,947 - -1.5 243,948 + -1.4 243,981 - -0.5 243,981 - +0.9 243,981 - -0.1 243,981 - +0.1 243,992 + -4.2 243,992 + -1.6 243,992 + -3.6 243,993 - -0.6 244,104 - -1.6 244,390 + MPMX19_02982 0.13 -0.9 244,390 + MPMX19_02982 0.13 -0.3 244,390 + MPMX19_02982 0.13 -1.3 244,390 + MPMX19_02982 0.13 -1.6 244,391 - MPMX19_02982 0.13 -1.5 244,391 - MPMX19_02982 0.13 -1.3 244,391 - MPMX19_02982 0.13 -0.8 244,462 + MPMX19_02982 0.20 +1.1 244,462 + MPMX19_02982 0.20 +0.1 244,462 + MPMX19_02982 0.20 +0.0 244,462 + MPMX19_02982 0.20 +1.4 244,463 - MPMX19_02982 0.21 +0.9 244,463 - MPMX19_02982 0.21 -0.4 244,463 - MPMX19_02982 0.21 -0.3 244,594 + MPMX19_02982 0.34 -0.1 245,011 + MPMX19_02982 0.78 +0.9 245,011 + MPMX19_02982 0.78 -0.5 245,011 + MPMX19_02982 0.78 -0.3 245,011 + MPMX19_02982 0.78 -1.6 245,011 + MPMX19_02982 0.78 +0.4 245,011 + MPMX19_02982 0.78 +0.5 245,011 + MPMX19_02982 0.78 -0.7 245,011 + MPMX19_02982 0.78 +0.2 245,012 - MPMX19_02982 0.78 -1.5 245,012 - MPMX19_02982 0.78 -1.0 245,012 - MPMX19_02982 0.78 -0.5 245,012 - MPMX19_02982 0.78 +0.6 245,012 - MPMX19_02982 0.78 -2.4 245,012 - MPMX19_02982 0.78 +0.2 245,261 + -1.1 245,356 - -3.8 245,356 - -0.9 245,376 + +0.2 245,377 - -1.4 245,492 - -1.3 245,599 + -1.2 245,599 + +0.5 245,599 + -0.5 245,599 + +0.3 245,599 + -1.6 245,599 + +0.3 245,599 + -1.3 245,599 + -1.1 245,599 + -1.0 245,599 + +0.7 245,599 + -0.5 245,600 - -0.9 245,600 - -1.3 245,600 - -0.1 245,600 - -1.1 245,600 - -0.3 245,600 - -0.5 245,600 - +0.5 245,600 - -0.4 245,600 - +0.1 245,600 - +0.2 245,600 - +0.5 245,600 - +0.6 245,600 - -1.1 245,600 - -1.2 245,600 - +0.4 245,612 - MPMX19_02983 0.10 -0.4 245,612 - MPMX19_02983 0.10 -0.9 245,689 + MPMX19_02983 0.17 -0.6 245,689 + MPMX19_02983 0.17 +0.5 245,689 + MPMX19_02983 0.17 +0.3 245,689 + MPMX19_02983 0.17 -0.1 245,690 - MPMX19_02983 0.18 -0.5 245,690 - MPMX19_02983 0.18 -1.6 245,690 - MPMX19_02983 0.18 +1.7 245,785 + MPMX19_02983 0.27 +0.2 245,785 + MPMX19_02983 0.27 +0.1 245,785 + MPMX19_02983 0.27 +1.1 245,785 + MPMX19_02983 0.27 -0.5 245,785 + MPMX19_02983 0.27 -0.6 245,785 + MPMX19_02983 0.27 +0.3 245,785 + MPMX19_02983 0.27 +0.0 245,785 + MPMX19_02983 0.27 -0.1 245,785 + MPMX19_02983 0.27 +0.7 245,786 - MPMX19_02983 0.27 -1.2 245,786 - MPMX19_02983 0.27 -0.8 245,786 - MPMX19_02983 0.27 -1.5 245,836 + MPMX19_02983 0.31 -1.8 245,836 + MPMX19_02983 0.31 -0.3 245,837 - MPMX19_02983 0.32 -0.2 245,848 + MPMX19_02983 0.33 -0.5 245,848 + MPMX19_02983 0.33 +0.4 245,848 + MPMX19_02983 0.33 +1.5 245,848 + MPMX19_02983 0.33 +0.8 245,848 + MPMX19_02983 0.33 +1.1 245,849 - MPMX19_02983 0.33 -0.5 245,849 - MPMX19_02983 0.33 +0.7 245,849 - MPMX19_02983 0.33 +1.1 245,849 - MPMX19_02983 0.33 -0.6 245,914 + MPMX19_02983 0.39 -0.5 245,914 + MPMX19_02983 0.39 -1.4 245,915 - MPMX19_02983 0.39 -0.6 245,915 - MPMX19_02983 0.39 -1.6 245,926 + MPMX19_02983 0.40 +0.8 245,926 + MPMX19_02983 0.40 -0.8 245,926 + MPMX19_02983 0.40 -1.5 245,926 + MPMX19_02983 0.40 -2.9 245,927 - MPMX19_02983 0.40 -0.8 245,927 - MPMX19_02983 0.40 -1.5 245,927 - MPMX19_02983 0.40 +0.5 246,025 + MPMX19_02983 0.49 -1.3 246,025 + MPMX19_02983 0.49 -0.1 246,025 + MPMX19_02983 0.49 -1.7 246,026 - MPMX19_02983 0.50 +0.3 246,026 - MPMX19_02983 0.50 -0.9 246,026 - MPMX19_02983 0.50 -0.4 246,026 - MPMX19_02983 0.50 +1.0 246,026 - MPMX19_02983 0.50 -1.1 246,026 - MPMX19_02983 0.50 -2.3 246,026 - MPMX19_02983 0.50 +1.5 246,026 - MPMX19_02983 0.50 +0.8 246,026 - MPMX19_02983 0.50 +0.1 246,026 - MPMX19_02983 0.50 -0.1 246,026 - MPMX19_02983 0.50 -0.2 246,136 + MPMX19_02983 0.60 +0.6 246,136 + MPMX19_02983 0.60 -1.3 246,136 + MPMX19_02983 0.60 -0.3 246,137 - MPMX19_02983 0.60 -0.7 246,137 - MPMX19_02983 0.60 +0.7 246,137 - MPMX19_02983 0.60 -0.2 246,137 - MPMX19_02983 0.60 -0.5 246,137 - MPMX19_02983 0.60 -0.5
Or see this region's nucleotide sequence