Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02895 and MPMX19_02896 are separated by 261 nucleotides MPMX19_02896 and MPMX19_02897 are separated by 35 nucleotides
MPMX19_02895: MPMX19_02895 - HTH-type transcriptional regulator LutR, at 149,227 to 149,958
_02895
MPMX19_02896: MPMX19_02896 - Alpha-ketoglutaric semialdehyde dehydrogenase 2, at 150,220 to 151,800
_02896
MPMX19_02897: MPMX19_02897 - hypothetical protein, at 151,836 to 152,960
_02897
Position (kb) 150
151
152 Strain fitness (log2 ratio) -2
-1
0
1 at 150.023 kb on - strand at 150.039 kb on - strand at 150.041 kb on - strand at 150.041 kb on - strand at 150.041 kb on - strand at 150.041 kb on - strand at 150.048 kb on + strand at 150.049 kb on - strand at 151.007 kb on - strand, within MPMX19_02896 at 151.007 kb on - strand, within MPMX19_02896 at 151.702 kb on + strand at 151.844 kb on + strand at 151.912 kb on + strand at 151.913 kb on - strand at 151.913 kb on - strand at 151.913 kb on - strand at 151.913 kb on - strand at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.212 kb on + strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.213 kb on - strand, within MPMX19_02897 at 152.257 kb on + strand, within MPMX19_02897 at 152.258 kb on - strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.466 kb on + strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.467 kb on - strand, within MPMX19_02897 at 152.518 kb on + strand, within MPMX19_02897 at 152.519 kb on - strand, within MPMX19_02897 at 152.696 kb on - strand, within MPMX19_02897 at 152.761 kb on + strand, within MPMX19_02897 at 152.761 kb on + strand, within MPMX19_02897 at 152.761 kb on + strand, within MPMX19_02897 at 152.762 kb on - strand, within MPMX19_02897 at 152.776 kb on + strand, within MPMX19_02897
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 150,023 - -1.1 150,039 - +0.3 150,041 - +0.6 150,041 - +0.3 150,041 - +1.5 150,041 - +0.8 150,048 + +0.3 150,049 - +0.5 151,007 - MPMX19_02896 0.50 +0.9 151,007 - MPMX19_02896 0.50 -0.2 151,702 + -0.2 151,844 + +0.3 151,912 + -0.7 151,913 - -0.7 151,913 - +1.0 151,913 - -1.9 151,913 - -0.8 152,212 + MPMX19_02897 0.33 -0.2 152,212 + MPMX19_02897 0.33 -0.6 152,212 + MPMX19_02897 0.33 +1.1 152,212 + MPMX19_02897 0.33 -0.2 152,212 + MPMX19_02897 0.33 -1.0 152,212 + MPMX19_02897 0.33 -0.7 152,212 + MPMX19_02897 0.33 +0.1 152,212 + MPMX19_02897 0.33 -1.0 152,212 + MPMX19_02897 0.33 -0.3 152,212 + MPMX19_02897 0.33 -0.4 152,213 - MPMX19_02897 0.34 -1.1 152,213 - MPMX19_02897 0.34 +0.3 152,213 - MPMX19_02897 0.34 -1.1 152,213 - MPMX19_02897 0.34 -0.6 152,257 + MPMX19_02897 0.37 +0.5 152,258 - MPMX19_02897 0.38 -2.1 152,466 + MPMX19_02897 0.56 -0.5 152,466 + MPMX19_02897 0.56 -0.4 152,466 + MPMX19_02897 0.56 +1.3 152,466 + MPMX19_02897 0.56 -1.1 152,466 + MPMX19_02897 0.56 -0.5 152,466 + MPMX19_02897 0.56 +1.7 152,466 + MPMX19_02897 0.56 +0.9 152,467 - MPMX19_02897 0.56 -0.2 152,467 - MPMX19_02897 0.56 +0.8 152,467 - MPMX19_02897 0.56 -0.5 152,467 - MPMX19_02897 0.56 +0.3 152,467 - MPMX19_02897 0.56 -0.3 152,467 - MPMX19_02897 0.56 -1.3 152,518 + MPMX19_02897 0.61 -0.2 152,519 - MPMX19_02897 0.61 -1.7 152,696 - MPMX19_02897 0.76 -1.1 152,761 + MPMX19_02897 0.82 -1.3 152,761 + MPMX19_02897 0.82 -1.2 152,761 + MPMX19_02897 0.82 -0.2 152,762 - MPMX19_02897 0.82 -1.4 152,776 + MPMX19_02897 0.84 +0.3
Or see this region's nucleotide sequence