Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00562 and MPMX19_00563 are separated by 833 nucleotides MPMX19_00563 and MPMX19_00564 are separated by 94 nucleotides MPMX19_00564 and MPMX19_00565 overlap by 4 nucleotides
MPMX19_00562: MPMX19_00562 - PhoH-like protein, at 576,663 to 577,418
_00562
MPMX19_00563: MPMX19_00563 - Septum site-determining protein MinC, at 578,252 to 579,019
_00563
MPMX19_00564: MPMX19_00564 - Septum site-determining protein MinD, at 579,114 to 579,929
_00564
MPMX19_00565: MPMX19_00565 - Cell division topological specificity factor, at 579,926 to 580,297
_00565
Position (kb) 578
579
580 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.282 kb on + strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.283 kb on - strand, within MPMX19_00562 at 577.350 kb on - strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.610 kb on + strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.611 kb on - strand at 577.700 kb on + strand at 577.700 kb on + strand at 577.701 kb on - strand at 577.701 kb on - strand at 577.701 kb on - strand at 577.709 kb on + strand at 577.709 kb on + strand at 577.709 kb on + strand at 577.709 kb on + strand at 577.709 kb on + strand at 577.709 kb on + strand at 577.710 kb on - strand at 577.710 kb on - strand at 577.748 kb on + strand at 577.754 kb on + strand at 577.754 kb on + strand at 577.755 kb on - strand at 577.755 kb on - strand at 577.755 kb on - strand at 577.804 kb on - strand at 577.838 kb on + strand at 577.838 kb on + strand at 577.891 kb on + strand at 577.891 kb on + strand at 577.891 kb on + strand at 577.891 kb on + strand at 577.891 kb on + strand at 577.891 kb on + strand at 577.891 kb on + strand at 577.891 kb on + strand at 577.891 kb on + strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.892 kb on - strand at 577.894 kb on + strand at 577.894 kb on + strand at 577.894 kb on + strand at 577.894 kb on + strand at 577.894 kb on + strand at 577.894 kb on + strand at 577.894 kb on + strand at 577.894 kb on + strand at 577.895 kb on - strand at 577.895 kb on - strand at 577.895 kb on - strand at 577.895 kb on - strand at 577.895 kb on - strand at 577.895 kb on - strand at 577.895 kb on - strand at 577.895 kb on - strand at 577.895 kb on - strand at 578.115 kb on + strand at 578.115 kb on + strand at 578.115 kb on + strand at 578.115 kb on + strand at 578.115 kb on + strand at 579.026 kb on + strand at 579.026 kb on + strand at 579.026 kb on + strand at 579.098 kb on + strand at 579.098 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 577,282 + MPMX19_00562 0.82 -0.5 577,282 + MPMX19_00562 0.82 +0.4 577,282 + MPMX19_00562 0.82 +1.5 577,282 + MPMX19_00562 0.82 -0.0 577,282 + MPMX19_00562 0.82 -0.7 577,282 + MPMX19_00562 0.82 -0.7 577,282 + MPMX19_00562 0.82 +2.4 577,282 + MPMX19_00562 0.82 +0.2 577,282 + MPMX19_00562 0.82 -2.2 577,282 + MPMX19_00562 0.82 +0.4 577,282 + MPMX19_00562 0.82 +0.2 577,282 + MPMX19_00562 0.82 +0.5 577,282 + MPMX19_00562 0.82 -0.4 577,282 + MPMX19_00562 0.82 -0.3 577,282 + MPMX19_00562 0.82 -0.0 577,282 + MPMX19_00562 0.82 -1.5 577,282 + MPMX19_00562 0.82 -0.7 577,282 + MPMX19_00562 0.82 -0.4 577,282 + MPMX19_00562 0.82 -0.7 577,282 + MPMX19_00562 0.82 +1.1 577,282 + MPMX19_00562 0.82 -0.3 577,282 + MPMX19_00562 0.82 -1.9 577,282 + MPMX19_00562 0.82 -2.5 577,282 + MPMX19_00562 0.82 -1.1 577,282 + MPMX19_00562 0.82 +1.5 577,282 + MPMX19_00562 0.82 +0.1 577,282 + MPMX19_00562 0.82 +0.3 577,282 + MPMX19_00562 0.82 -0.9 577,282 + MPMX19_00562 0.82 -0.9 577,282 + MPMX19_00562 0.82 -1.3 577,282 + MPMX19_00562 0.82 +1.5 577,282 + MPMX19_00562 0.82 -0.5 577,282 + MPMX19_00562 0.82 -0.7 577,282 + MPMX19_00562 0.82 -1.5 577,282 + MPMX19_00562 0.82 -0.1 577,283 - MPMX19_00562 0.82 +0.4 577,283 - MPMX19_00562 0.82 +0.8 577,283 - MPMX19_00562 0.82 -0.1 577,283 - MPMX19_00562 0.82 -0.1 577,283 - MPMX19_00562 0.82 -0.5 577,283 - MPMX19_00562 0.82 -0.1 577,283 - MPMX19_00562 0.82 +0.2 577,283 - MPMX19_00562 0.82 -0.1 577,283 - MPMX19_00562 0.82 -0.1 577,283 - MPMX19_00562 0.82 -2.1 577,283 - MPMX19_00562 0.82 -0.0 577,283 - MPMX19_00562 0.82 -0.6 577,283 - MPMX19_00562 0.82 -0.6 577,283 - MPMX19_00562 0.82 +1.5 577,283 - MPMX19_00562 0.82 +0.6 577,283 - MPMX19_00562 0.82 -0.6 577,283 - MPMX19_00562 0.82 +0.7 577,283 - MPMX19_00562 0.82 +0.7 577,283 - MPMX19_00562 0.82 +0.3 577,283 - MPMX19_00562 0.82 +0.2 577,283 - MPMX19_00562 0.82 -0.6 577,283 - MPMX19_00562 0.82 +0.6 577,283 - MPMX19_00562 0.82 -2.8 577,283 - MPMX19_00562 0.82 +0.2 577,350 - +0.3 577,610 + +0.7 577,610 + +0.9 577,610 + +1.7 577,610 + +0.2 577,610 + -1.3 577,610 + -1.7 577,610 + +0.5 577,610 + -1.8 577,610 + +0.5 577,610 + +0.7 577,610 + -0.6 577,610 + +0.3 577,610 + +0.7 577,610 + -0.5 577,610 + -0.8 577,610 + +0.3 577,610 + +0.1 577,610 + -0.5 577,611 - -1.1 577,611 - +0.5 577,611 - +0.7 577,611 - -0.8 577,611 - -0.0 577,611 - -0.5 577,611 - -0.5 577,611 - +0.2 577,611 - +0.7 577,611 - -0.0 577,611 - -1.3 577,611 - -0.1 577,611 - -2.1 577,611 - -0.4 577,611 - -0.9 577,611 - +0.3 577,611 - -2.0 577,611 - -1.3 577,700 + -2.1 577,700 + +0.7 577,701 - +0.7 577,701 - +0.3 577,701 - -0.3 577,709 + -1.2 577,709 + -1.1 577,709 + -0.2 577,709 + -0.8 577,709 + -1.4 577,709 + -1.0 577,710 - -1.0 577,710 - -0.9 577,748 + -1.4 577,754 + +0.2 577,754 + +1.3 577,755 - +0.7 577,755 - +0.9 577,755 - +0.3 577,804 - +0.5 577,838 + -0.9 577,838 + -0.4 577,891 + -0.4 577,891 + -1.8 577,891 + -0.4 577,891 + +0.5 577,891 + -0.5 577,891 + -2.8 577,891 + -0.9 577,891 + -1.1 577,891 + -0.4 577,892 - -1.1 577,892 - -0.8 577,892 - +0.5 577,892 - -1.7 577,892 - -0.0 577,892 - +1.0 577,892 - +1.5 577,892 - -0.9 577,892 - -1.8 577,892 - -1.1 577,892 - -1.1 577,892 - +0.4 577,892 - -1.0 577,894 + +1.1 577,894 + -0.5 577,894 + +0.1 577,894 + -0.6 577,894 + -2.2 577,894 + +1.2 577,894 + -1.1 577,894 + -1.5 577,895 - +0.7 577,895 - +0.9 577,895 - -0.8 577,895 - +0.6 577,895 - -1.1 577,895 - +2.1 577,895 - +1.3 577,895 - -0.0 577,895 - -2.6 578,115 + +0.1 578,115 + -0.3 578,115 + +0.4 578,115 + -0.5 578,115 + -0.5 579,026 + +0.4 579,026 + -0.5 579,026 + -0.5 579,098 + +0.5 579,098 + -1.0
Or see this region's nucleotide sequence