Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF900 and GFF901 are separated by 60 nucleotides GFF901 and GFF902 are separated by 22 nucleotides GFF902 and GFF903 overlap by 35 nucleotides
GFF900 - Urease subunit alpha 1, at 969,180 to 970,892
GFF900
GFF901 - Urease subunit alpha, at 970,953 to 971,573
GFF901
GFF902 - Urease accessory protein UreD, at 971,596 to 972,453
GFF902
GFF903 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 972,419 to 973,114
GFF903
Position (kb) 970
971
972 Strain fitness (log2 ratio) -2
-1
0
1 at 970.035 kb on - strand, within GFF900 at 970.211 kb on + strand, within GFF900 at 970.211 kb on + strand, within GFF900 at 970.212 kb on - strand, within GFF900 at 970.212 kb on - strand, within GFF900 at 970.311 kb on + strand, within GFF900 at 970.311 kb on + strand, within GFF900 at 970.312 kb on - strand, within GFF900 at 970.312 kb on - strand, within GFF900 at 970.682 kb on + strand, within GFF900 at 970.772 kb on - strand at 970.772 kb on - strand at 970.861 kb on + strand at 970.861 kb on + strand at 970.862 kb on - strand at 970.862 kb on - strand at 970.955 kb on - strand at 970.955 kb on - strand at 970.955 kb on - strand at 970.955 kb on - strand at 970.987 kb on + strand at 970.988 kb on - strand at 971.140 kb on + strand, within GFF901 at 971.140 kb on + strand, within GFF901 at 971.175 kb on - strand, within GFF901 at 971.752 kb on - strand, within GFF902 at 971.798 kb on + strand, within GFF902 at 971.799 kb on - strand, within GFF902 at 971.799 kb on - strand, within GFF902 at 971.891 kb on + strand, within GFF902 at 971.892 kb on - strand, within GFF902 at 971.892 kb on - strand, within GFF902 at 971.892 kb on - strand, within GFF902 at 972.149 kb on + strand, within GFF902 at 972.149 kb on + strand, within GFF902 at 972.149 kb on + strand, within GFF902 at 972.150 kb on - strand, within GFF902 at 972.249 kb on + strand, within GFF902 at 972.249 kb on + strand, within GFF902 at 972.541 kb on - strand, within GFF903 at 972.541 kb on - strand, within GFF903
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 970,035 - GFF900 0.50 +0.4 970,211 + GFF900 0.60 +1.4 970,211 + GFF900 0.60 +0.0 970,212 - GFF900 0.60 -0.6 970,212 - GFF900 0.60 -2.0 970,311 + GFF900 0.66 +0.3 970,311 + GFF900 0.66 +0.5 970,312 - GFF900 0.66 -0.2 970,312 - GFF900 0.66 -0.3 970,682 + GFF900 0.88 -0.3 970,772 - +1.0 970,772 - +0.6 970,861 + +0.5 970,861 + +0.8 970,862 - +0.8 970,862 - +0.4 970,955 - +0.7 970,955 - +0.6 970,955 - -0.3 970,955 - +0.2 970,987 + -1.0 970,988 - +0.3 971,140 + GFF901 0.30 -0.7 971,140 + GFF901 0.30 +0.1 971,175 - GFF901 0.36 +0.1 971,752 - GFF902 0.18 -0.9 971,798 + GFF902 0.24 +1.2 971,799 - GFF902 0.24 -0.2 971,799 - GFF902 0.24 -0.1 971,891 + GFF902 0.34 -0.0 971,892 - GFF902 0.34 -0.2 971,892 - GFF902 0.34 +0.0 971,892 - GFF902 0.34 -0.6 972,149 + GFF902 0.64 -0.4 972,149 + GFF902 0.64 -0.5 972,149 + GFF902 0.64 +0.3 972,150 - GFF902 0.65 +0.2 972,249 + GFF902 0.76 -0.6 972,249 + GFF902 0.76 -0.1 972,541 - GFF903 0.18 +0.4 972,541 - GFF903 0.18 +0.2
Or see this region's nucleotide sequence